data_2LHZ # _entry.id 2LHZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LHZ pdb_00002lhz 10.2210/pdb2lhz/pdb RCSB RCSB102407 ? ? BMRB 17872 ? ? WWPDB D_1000102407 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17872 BMRB unspecified . 2LHV PDB unspecified . 2LHW PDB unspecified . 2LHX PDB unspecified . 2LHY PDB unspecified . 2LI0 PDB unspecified . 2LI1 PDB unspecified . 2LI2 PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LHZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Borgert, A.' 1 'Heimburg-Molinaro, J.' 2 'Lasanajak, Y.' 3 'Ju, T.' 4 'Liu, M.' 5 'Thompson, P.' 6 'Ragupathi, G.' 7 'Barany, G.' 8 'Cummings, R.' 9 'Smith, D.' 10 'Live, D.' 11 # _citation.id primary _citation.title 'Deciphering structural elements of mucin glycoprotein recognition.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 7 _citation.page_first 1031 _citation.page_last 1039 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22444368 _citation.pdbx_database_id_DOI 10.1021/cb300076s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Borgert, A.' 1 ? primary 'Heimburg-Molinaro, J.' 2 ? primary 'Song, X.' 3 ? primary 'Lasanajak, Y.' 4 ? primary 'Ju, T.' 5 ? primary 'Liu, M.' 6 ? primary 'Thompson, P.' 7 ? primary 'Ragupathi, G.' 8 ? primary 'Barany, G.' 9 ? primary 'Smith, D.F.' 10 ? primary 'Cummings, R.D.' 11 ? primary 'Live, D.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'MUC2 Mucin Domain Peptide' 781.939 1 ? ? ? ? 2 non-polymer syn 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PTTTPLK(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPTTTPLKX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 THR n 1 4 THR n 1 5 THR n 1 6 PRO n 1 7 LEU n 1 8 LYS n 1 9 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'Synthesized via solid phase peptide synthesis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LHZ _struct_ref.pdbx_db_accession 2LHZ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LHZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LHZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-1H NOESY' 1 2 1 '3D TOCSY-NOESY' 1 3 1 '2D 1H-15N HSQC' 1 4 1 '2D 1H-13C HSQC' 1 5 1 '2D 1H-1H TOCSY' 1 6 2 '2D 1H-1H COSY' 1 7 1 '2D 1H-13C HMBC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details ;2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ? ? ? ;2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 100% D2O ; 2 '100% D2O' ? ? ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Varian INOVA 2 'Varian INOVA' 900 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2LHZ _pdbx_nmr_refine.method 'torsion space simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 36 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LHZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation 0.25 _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 5 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LHZ _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger A. T. et.al.' 'structure solution' CNS ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LHZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LHZ _struct.title 'Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LHZ _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'glycosylation, Tn antigen, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 1 A PRO 2 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale2 covale one ? A THR 3 OG1 ? ? ? 1_555 B A2G . C1 ? ? A THR 3 A A2G 10 1_555 ? ? ? ? ? ? ? 1.410 ? O-Glycosylation covale3 covale one ? A THR 4 OG1 ? ? ? 1_555 C A2G . C1 ? ? A THR 4 A A2G 11 1_555 ? ? ? ? ? ? ? 1.410 ? O-Glycosylation covale4 covale both ? A LYS 8 C ? ? ? 1_555 A NH2 9 N ? ? A LYS 8 A NH2 9 1_555 ? ? ? ? ? ? ? 1.305 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2LHZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 NH2 9 9 9 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A2G 1 10 10 A2G A2G A . C 2 A2G 1 11 11 A2G A2G A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A THR 3 A THR 3 ? THR 'GLYCOSYLATION SITE' 2 A THR 4 A THR 4 ? THR 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2012-06-27 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Database references' 9 4 'Structure model' Other 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_entity_src_syn 7 3 'Structure model' pdbx_nmr_ensemble 8 3 'Structure model' pdbx_validate_close_contact 9 3 'Structure model' struct_conn 10 3 'Structure model' struct_site 11 3 'Structure model' struct_site_gen 12 4 'Structure model' chem_comp 13 4 'Structure model' database_2 14 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 8 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 9 3 'Structure model' '_pdbx_nmr_ensemble.conformer_selection_criteria' 10 3 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 11 3 'Structure model' '_struct_conn.pdbx_dist_value' 12 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 3 'Structure model' '_struct_conn.pdbx_role' 14 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 4 'Structure model' '_chem_comp.pdbx_synonyms' 26 4 'Structure model' '_database_2.pdbx_DOI' 27 4 'Structure model' '_database_2.pdbx_database_accession' 28 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 2LHZ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE SEQUENCE PTTTP IS PART OF THE MUC2 MUCIN REPEAT POLYPEPTIDE PTTTPITTTTTVTPTPTPTGTQT.' _pdbx_entry_details.compound_details ;THE MODIFIED SEQUENCE PTTTPLK FRAGMENT WAS CHOSEN BECAUSE IT WAS RELEVANT TO STRUCTURE/FUNCTION ANALYSIS OF POST TRANSLATIONAL GLYCOSYLATION OF MUC2, FOR WHICH IT WAS USED AS A MODEL SUBSTRATE. STUDIES ON IT AND ON O-GALNAC GLYCOSYLATED FORMS HAD BEEN CARRIED OUT USING SEVERAL POLYPEPTIDE GALNAC TRANSFERASE ISOFORMS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'MUC2 Mucin Domain Peptide-1' ? 2-10 mM ? 1 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-2' ? 2-10 mM ? 1 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-3' ? 2-10 mM ? 1 'MUC2 Mucin Domain Peptide-4' ? 2-10 mM ? 2 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-5' ? 2-10 mM ? 2 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-6' ? 2-10 mM ? 2 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 15 _pdbx_validate_close_contact.auth_atom_id_1 HN1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 NH2 _pdbx_validate_close_contact.auth_seq_id_1 9 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HO6 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 A2G _pdbx_validate_close_contact.auth_seq_id_2 11 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.29 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6 ? ? -44.60 99.78 2 3 PRO A 6 ? ? -44.54 102.95 3 4 THR A 5 ? ? -157.49 73.18 4 6 PRO A 6 ? ? -44.53 99.86 5 6 LEU A 7 ? ? -165.94 -146.64 6 7 PRO A 6 ? ? -44.54 106.96 7 7 LEU A 7 ? ? -73.94 -167.34 8 8 LEU A 7 ? ? -166.04 87.09 9 9 LEU A 7 ? ? -74.05 24.96 10 10 PRO A 6 ? ? -44.54 99.73 11 10 LEU A 7 ? ? -165.97 99.55 12 11 PRO A 6 ? ? -44.63 103.01 13 11 LEU A 7 ? ? -165.94 100.53 14 12 PRO A 6 ? ? -44.57 103.89 15 12 LEU A 7 ? ? -165.97 -150.25 16 14 THR A 4 ? ? -105.03 -130.43 17 14 PRO A 6 ? ? -44.64 96.72 18 14 LEU A 7 ? ? -166.01 113.49 19 15 PRO A 6 ? ? -44.62 99.71 20 16 LEU A 7 ? ? -74.07 44.80 21 17 LEU A 7 ? ? -165.95 103.69 22 19 PRO A 6 ? ? -44.51 101.68 23 20 THR A 4 ? ? -100.56 -166.73 24 22 PRO A 6 ? ? -44.62 101.86 25 23 PRO A 6 ? ? -44.59 99.59 26 23 LEU A 7 ? ? -165.96 102.22 27 24 THR A 5 ? ? -157.32 72.93 28 25 LEU A 7 ? ? -166.00 48.89 29 26 PRO A 6 ? ? -44.73 103.02 30 26 LEU A 7 ? ? -74.05 -146.35 31 27 THR A 4 ? ? -101.54 -166.12 32 27 PRO A 6 ? ? -44.70 -178.31 33 29 PRO A 6 ? ? -44.62 104.01 34 30 THR A 3 ? ? -143.93 -107.02 35 30 PRO A 6 ? ? -44.53 156.72 36 32 PRO A 6 ? ? -44.59 157.62 37 32 LEU A 7 ? ? -165.89 25.06 38 36 PRO A 6 ? ? -44.56 100.03 39 36 LEU A 7 ? ? -165.97 113.96 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _pdbx_entity_nonpoly.comp_id A2G #