data_2LI1 # _entry.id 2LI1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LI1 pdb_00002li1 10.2210/pdb2li1/pdb RCSB RCSB102409 ? ? BMRB 17874 ? 10.13018/BMR17874 WWPDB D_1000102409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2012-06-27 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2024-11-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Source and taxonomy' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_entity_src_syn 7 3 'Structure model' pdbx_nmr_ensemble 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site 10 3 'Structure model' struct_site_gen 11 4 'Structure model' chem_comp 12 4 'Structure model' chem_comp_atom 13 4 'Structure model' chem_comp_bond 14 4 'Structure model' database_2 15 4 'Structure model' pdbx_entry_details 16 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 8 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 9 3 'Structure model' '_pdbx_nmr_ensemble.conformer_selection_criteria' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 3 'Structure model' '_struct_conn.pdbx_role' 13 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_chem_comp.pdbx_synonyms' 25 4 'Structure model' '_database_2.pdbx_DOI' 26 4 'Structure model' '_database_2.pdbx_database_accession' 27 4 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LI1 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17874 BMRB unspecified . 2LHV PDB unspecified . 2LHW PDB unspecified . 2LHX PDB unspecified . 2LHY PDB unspecified . 2LHZ PDB unspecified . 2LI0 PDB unspecified . 2LI2 PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Borgert, A.' 1 'Heimburg-Molinaro, J.' 2 'Lasanajak, Y.' 3 'Ju, T.' 4 'Liu, M.' 5 'Thompson, P.' 6 'Ragupathi, G.' 7 'Barany, G.' 8 'Cummings, R.' 9 'Smith, D.' 10 'Live, D.' 11 # _citation.id primary _citation.title 'Deciphering structural elements of mucin glycoprotein recognition.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 7 _citation.page_first 1031 _citation.page_last 1039 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22444368 _citation.pdbx_database_id_DOI 10.1021/cb300076s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Borgert, A.' 1 ? primary 'Heimburg-Molinaro, J.' 2 ? primary 'Song, X.' 3 ? primary 'Lasanajak, Y.' 4 ? primary 'Ju, T.' 5 ? primary 'Liu, M.' 6 ? primary 'Thompson, P.' 7 ? primary 'Ragupathi, G.' 8 ? primary 'Barany, G.' 9 ? primary 'Smith, D.F.' 10 ? primary 'Cummings, R.D.' 11 ? primary 'Live, D.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'MUC2 Mucin Domain Peptide' 781.939 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PTTTPLK(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPTTTPLKX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _pdbx_entity_nonpoly.comp_id A2G # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 THR n 1 4 THR n 1 5 THR n 1 6 PRO n 1 7 LEU n 1 8 LYS n 1 9 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'Synthesized via solid phase peptide synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 NH2 9 9 9 NH2 NH2 A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A2G _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 10 _pdbx_nonpoly_scheme.auth_seq_num 10 _pdbx_nonpoly_scheme.pdb_mon_id A2G _pdbx_nonpoly_scheme.auth_mon_id A2G _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LI1 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LI1 _struct.title 'Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LI1 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'glycosylation, Tn antigen, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LI1 _struct_ref.pdbx_db_accession 2LI1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LI1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LI1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 1 A PRO 2 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale2 covale one ? A THR 4 OG1 ? ? ? 1_555 B A2G . C1 ? ? A THR 4 A A2G 10 1_555 ? ? ? ? ? ? ? 1.410 ? O-Glycosylation covale3 covale both ? A LYS 8 C ? ? ? 1_555 A NH2 9 N ? ? A LYS 8 A NH2 9 1_555 ? ? ? ? ? ? ? 1.304 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? PRO A 2 ? ACE A 1 ? 1_555 PRO A 2 ? 1_555 . . PRO 13 ACE None 'Terminal acetylation' 2 NH2 A 9 ? LYS A 8 ? NH2 A 9 ? 1_555 LYS A 8 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 3 A2G B . ? THR A 4 ? A2G A 10 ? 1_555 THR A 4 ? 1_555 C1 OG1 THR 3 A2G O-Glycosylation Carbohydrate # _pdbx_entry_details.entry_id 2LI1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE SEQUENCE PTTTP IS PART OF THE MUC2 MUCIN REPEAT POLYPEPTIDE PTTTPITTTTTVTPTPTPTGTQT.' _pdbx_entry_details.compound_details ;THE MODIFIED SEQUENCE PTTTPLK FRAGMENT WAS CHOSEN BECAUSE IT WAS RELEVANT TO STRUCTURE/FUNCTION ANALYSIS OF POST TRANSLATIONAL GLYCOSYLATION OF MUC2, FOR WHICH IT WAS USED AS A MODEL SUBSTRATE. STUDIES ON IT AND ON O-GALNAC GLYCOSYLATED FORMS HAD BEEN CARRIED OUT USING SEVERAL POLYPEPTIDE GALNAC TRANSFERASE ISOFORMS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 3 ? ? -152.90 35.29 2 1 PRO A 6 ? ? -44.62 101.78 3 2 THR A 3 ? ? -152.90 35.08 4 2 PRO A 6 ? ? -44.53 90.44 5 3 THR A 3 ? ? -153.30 48.34 6 3 PRO A 6 ? ? -38.16 91.75 7 3 LEU A 7 ? ? -163.82 113.75 8 4 THR A 3 ? ? -153.13 39.39 9 4 THR A 5 ? ? -154.38 64.93 10 4 PRO A 6 ? ? -44.66 162.44 11 5 THR A 3 ? ? -153.21 42.52 12 5 THR A 5 ? ? -154.41 73.33 13 6 THR A 3 ? ? -153.19 35.34 14 6 PRO A 6 ? ? -44.63 86.55 15 7 THR A 3 ? ? -153.58 49.58 16 7 PRO A 6 ? ? -44.74 105.72 17 7 LEU A 7 ? ? -163.33 116.80 18 8 THR A 3 ? ? -153.23 45.22 19 8 THR A 5 ? ? -154.40 66.81 20 8 PRO A 6 ? ? -44.67 165.65 21 9 THR A 3 ? ? -153.18 40.26 22 9 PRO A 6 ? ? -44.64 74.06 23 9 LEU A 7 ? ? -76.33 24.52 24 10 THR A 3 ? ? -152.89 35.17 25 10 LEU A 7 ? ? -163.21 97.35 26 11 THR A 3 ? ? -152.95 35.05 27 11 PRO A 6 ? ? -44.67 103.26 28 12 THR A 3 ? ? -152.88 35.16 29 12 PRO A 6 ? ? -44.68 86.40 30 13 THR A 3 ? ? -153.21 39.98 31 13 PRO A 6 ? ? -44.59 103.02 32 14 THR A 3 ? ? -153.16 39.66 33 14 PRO A 6 ? ? -44.55 103.77 34 14 LEU A 7 ? ? -163.22 97.82 35 15 THR A 3 ? ? -153.21 41.58 36 15 PRO A 6 ? ? -44.64 98.23 37 16 THR A 3 ? ? -153.14 39.68 38 16 PRO A 6 ? ? -44.75 100.32 39 16 LEU A 7 ? ? -75.67 22.48 40 17 THR A 3 ? ? -153.08 46.21 41 18 THR A 3 ? ? -153.06 35.82 42 18 PRO A 6 ? ? -44.68 98.02 43 19 THR A 3 ? ? -153.16 38.46 44 19 PRO A 6 ? ? -44.60 102.15 45 20 THR A 3 ? ? -152.92 38.17 46 20 PRO A 6 ? ? -44.57 107.98 47 21 THR A 3 ? ? -153.15 35.26 48 21 THR A 5 ? ? -154.35 66.33 49 21 LEU A 7 ? ? -75.73 26.69 50 22 THR A 3 ? ? -153.21 40.90 51 22 THR A 5 ? ? -154.37 66.81 52 22 PRO A 6 ? ? -44.54 103.26 53 23 THR A 3 ? ? -152.91 35.14 54 23 LEU A 7 ? ? -163.31 94.93 55 24 THR A 3 ? ? -153.22 40.21 56 24 THR A 5 ? ? -154.35 66.68 57 24 PRO A 6 ? ? -44.63 103.81 58 25 THR A 3 ? ? -152.81 39.88 59 25 LEU A 7 ? ? -163.33 21.45 60 26 THR A 3 ? ? -153.15 36.25 61 26 PRO A 6 ? ? -44.47 96.24 62 27 THR A 3 ? ? -152.93 38.92 63 27 PRO A 6 ? ? -44.65 168.55 64 27 LEU A 7 ? ? -163.77 114.52 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id THR _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id THR _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 27 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LI1 _pdbx_nmr_ensemble.maximum_distance_constraint_violation 0.25 _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 5 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LI1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details '2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 90% H2O/10% D2O' 1 '90% H2O/10% D2O' ? ? ? '2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 100% D2O' 2 '100% D2O' ? ? ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'MUC2 Mucin Domain Peptide-1' ? 2-10 mM ? 1 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-2' ? 2-10 mM ? 1 'MUC2 Mucin Domain Peptide-3' ? 2-10 mM ? 2 'SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE)-4' ? 2-10 mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-1H NOESY' 1 2 1 '3D TOCSY-NOESY' 1 3 1 '2D 1H-15N HSQC' 1 4 1 '2D 1H-13C HSQC' 1 5 1 '2D 1H-1H TOCSY' 1 6 2 '2D 1H-1H COSY' 1 7 1 '2D 1H-13C HMBC' # _pdbx_nmr_refine.entry_id 2LI1 _pdbx_nmr_refine.method 'torsion space simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger A. T. et.al.' 'structure solution' CNS ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ACE C C N N 31 ACE O O N N 32 ACE CH3 C N N 33 ACE H H N N 34 ACE H1 H N N 35 ACE H2 H N N 36 ACE H3 H N N 37 LEU N N N N 38 LEU CA C N S 39 LEU C C N N 40 LEU O O N N 41 LEU CB C N N 42 LEU CG C N N 43 LEU CD1 C N N 44 LEU CD2 C N N 45 LEU OXT O N N 46 LEU H H N N 47 LEU H2 H N N 48 LEU HA H N N 49 LEU HB2 H N N 50 LEU HB3 H N N 51 LEU HG H N N 52 LEU HD11 H N N 53 LEU HD12 H N N 54 LEU HD13 H N N 55 LEU HD21 H N N 56 LEU HD22 H N N 57 LEU HD23 H N N 58 LEU HXT H N N 59 LYS N N N N 60 LYS CA C N S 61 LYS C C N N 62 LYS O O N N 63 LYS CB C N N 64 LYS CG C N N 65 LYS CD C N N 66 LYS CE C N N 67 LYS NZ N N N 68 LYS OXT O N N 69 LYS H H N N 70 LYS H2 H N N 71 LYS HA H N N 72 LYS HB2 H N N 73 LYS HB3 H N N 74 LYS HG2 H N N 75 LYS HG3 H N N 76 LYS HD2 H N N 77 LYS HD3 H N N 78 LYS HE2 H N N 79 LYS HE3 H N N 80 LYS HZ1 H N N 81 LYS HZ2 H N N 82 LYS HZ3 H N N 83 LYS HXT H N N 84 NH2 N N N N 85 NH2 HN1 H N N 86 NH2 HN2 H N N 87 PRO N N N N 88 PRO CA C N S 89 PRO C C N N 90 PRO O O N N 91 PRO CB C N N 92 PRO CG C N N 93 PRO CD C N N 94 PRO OXT O N N 95 PRO H H N N 96 PRO HA H N N 97 PRO HB2 H N N 98 PRO HB3 H N N 99 PRO HG2 H N N 100 PRO HG3 H N N 101 PRO HD2 H N N 102 PRO HD3 H N N 103 PRO HXT H N N 104 THR N N N N 105 THR CA C N S 106 THR C C N N 107 THR O O N N 108 THR CB C N R 109 THR OG1 O N N 110 THR CG2 C N N 111 THR OXT O N N 112 THR H H N N 113 THR H2 H N N 114 THR HA H N N 115 THR HB H N N 116 THR HG1 H N N 117 THR HG21 H N N 118 THR HG22 H N N 119 THR HG23 H N N 120 THR HXT H N N 121 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ACE C O doub N N 31 ACE C CH3 sing N N 32 ACE C H sing N N 33 ACE CH3 H1 sing N N 34 ACE CH3 H2 sing N N 35 ACE CH3 H3 sing N N 36 LEU N CA sing N N 37 LEU N H sing N N 38 LEU N H2 sing N N 39 LEU CA C sing N N 40 LEU CA CB sing N N 41 LEU CA HA sing N N 42 LEU C O doub N N 43 LEU C OXT sing N N 44 LEU CB CG sing N N 45 LEU CB HB2 sing N N 46 LEU CB HB3 sing N N 47 LEU CG CD1 sing N N 48 LEU CG CD2 sing N N 49 LEU CG HG sing N N 50 LEU CD1 HD11 sing N N 51 LEU CD1 HD12 sing N N 52 LEU CD1 HD13 sing N N 53 LEU CD2 HD21 sing N N 54 LEU CD2 HD22 sing N N 55 LEU CD2 HD23 sing N N 56 LEU OXT HXT sing N N 57 LYS N CA sing N N 58 LYS N H sing N N 59 LYS N H2 sing N N 60 LYS CA C sing N N 61 LYS CA CB sing N N 62 LYS CA HA sing N N 63 LYS C O doub N N 64 LYS C OXT sing N N 65 LYS CB CG sing N N 66 LYS CB HB2 sing N N 67 LYS CB HB3 sing N N 68 LYS CG CD sing N N 69 LYS CG HG2 sing N N 70 LYS CG HG3 sing N N 71 LYS CD CE sing N N 72 LYS CD HD2 sing N N 73 LYS CD HD3 sing N N 74 LYS CE NZ sing N N 75 LYS CE HE2 sing N N 76 LYS CE HE3 sing N N 77 LYS NZ HZ1 sing N N 78 LYS NZ HZ2 sing N N 79 LYS NZ HZ3 sing N N 80 LYS OXT HXT sing N N 81 NH2 N HN1 sing N N 82 NH2 N HN2 sing N N 83 PRO N CA sing N N 84 PRO N CD sing N N 85 PRO N H sing N N 86 PRO CA C sing N N 87 PRO CA CB sing N N 88 PRO CA HA sing N N 89 PRO C O doub N N 90 PRO C OXT sing N N 91 PRO CB CG sing N N 92 PRO CB HB2 sing N N 93 PRO CB HB3 sing N N 94 PRO CG CD sing N N 95 PRO CG HG2 sing N N 96 PRO CG HG3 sing N N 97 PRO CD HD2 sing N N 98 PRO CD HD3 sing N N 99 PRO OXT HXT sing N N 100 THR N CA sing N N 101 THR N H sing N N 102 THR N H2 sing N N 103 THR CA C sing N N 104 THR CA CB sing N N 105 THR CA HA sing N N 106 THR C O doub N N 107 THR C OXT sing N N 108 THR CB OG1 sing N N 109 THR CB CG2 sing N N 110 THR CB HB sing N N 111 THR OG1 HG1 sing N N 112 THR CG2 HG21 sing N N 113 THR CG2 HG22 sing N N 114 THR CG2 HG23 sing N N 115 THR OXT HXT sing N N 116 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Varian INOVA 2 'Varian INOVA' 900 Varian INOVA 3 'Varian INOVA' # _atom_sites.entry_id 2LI1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_