data_2LI4 # _entry.id 2LI4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LI4 RCSB RCSB102412 BMRB 17877 WWPDB D_1000102412 # _pdbx_database_related.db_id 17877 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LI4 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-22 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Korth, M.M.T.' 1 'Sigel, R.K.O.' 2 # _citation.id primary _citation.title 'Solution structure of a shortened antiterminator hairpin from a Mg2+ riboswitch' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Korth, M.M.T.' 1 primary 'Sigel, R.K.O.' 2 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (32-MER)' _entity.formula_weight 10304.181 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACCGAUAAGGUAGAAAUGCCUUAUCGGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACCGAUAAGGUAGAAAUGCCUUAUCGGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 C n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 A n 1 15 G n 1 16 A n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 C n 1 22 C n 1 23 U n 1 24 U n 1 25 A n 1 26 U n 1 27 C n 1 28 G n 1 29 G n 1 30 U n 1 31 C n 1 32 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Yersinia enterocolitica' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LI4 _struct_ref.pdbx_db_accession 2LI4 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LI4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 32 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LI4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 32 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-1H NOESY' 1 3 3 '2D 1H-1H NOESY' 3 4 4 '2D 1H-1H TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.05 6.8 ambient ? 303 K 2 0.05 6.8 ambient ? 278 K 3 0.05 6.8 ambient ? 293 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '50 mM potassium chloride, 10 uM EDTA, 0.24 mM RNA (32-MER), 100% D2O' 1 '100% D2O' '50 mM potassium chloride, 10 uM EDTA, 0.6 mM RNA (32-MER), 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '50 mM potassium chloride, 10 uM EDTA, 0.8 mM RNA (32-MER), 100% D2O' 3 '100% D2O' '50 mM potassium chloride, 10 uM EDTA, 0.5 mM RNA (32-MER), 100% D2O' 4 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LI4 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LI4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LI4 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.2 1 Goddard 'chemical shift assignment' SPARKY 3.1 2 Goddard 'data analysis' SPARKY 3.1 3 Goddard 'peak picking' SPARKY 3.1 4 'Bruker Biospin' processing TOPSPIN '1.3, 2.1, 3.0a' 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' X-PLOR 2.24 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR 2.24 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LI4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LI4 _struct.title 'Solution structure of a shortened antiterminator hairpin from a Mg2+ riboswitch' _struct.pdbx_descriptor 32-MER _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LI4 _struct_keywords.pdbx_keywords RNA _struct_keywords.text RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 3 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 3 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 4 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 4 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 4 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 7 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 7 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 8 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 8 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 9 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 9 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 10 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 10 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 11 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 11 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 11 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A U 13 N3 ? ? ? 1_555 A G 20 O6 ? ? A U 13 A G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog33 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 20 N1 ? ? A U 13 A G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog34 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 14 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 14 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 15 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog37 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 18 N7 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog38 hydrog ? ? A G 15 N3 ? ? ? 1_555 A A 18 N6 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2LI4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 U 30 30 30 U U A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-08-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'potassium chloride-1' 50 ? mM ? 1 EDTA-2 10 ? uM ? 1 'RNA (32-MER)-3' 0.24 ? mM ? 1 'potassium chloride-4' 50 ? mM ? 2 EDTA-5 10 ? uM ? 2 'RNA (32-MER)-6' 0.6 ? mM ? 2 'potassium chloride-7' 50 ? mM ? 3 EDTA-8 10 ? uM ? 3 'RNA (32-MER)-9' 0.8 ? mM ? 3 'potassium chloride-10' 50 ? mM ? 4 EDTA-11 10 ? uM ? 4 'RNA (32-MER)-12' 0.5 ? mM ? 4 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LI4 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 569 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 "H2'" A U 23 ? ? "O4'" A U 24 ? ? 1.54 2 3 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.55 3 6 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.50 4 7 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.50 5 8 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.49 6 10 "O2'" A G 1 ? ? H8 A G 2 ? ? 1.53 7 14 "O2'" A G 1 ? ? H8 A G 2 ? ? 1.47 8 15 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.56 9 17 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.59 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LI4 'double helix' 2LI4 'a-form double helix' 2LI4 'mismatched base pair' 2LI4 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 32 1_555 0.484 -0.068 -0.094 -3.578 -3.713 -3.078 1 A_G1:C32_A A 1 ? A 32 ? 19 1 1 A G 2 1_555 A C 31 1_555 -0.291 -0.124 -0.361 -3.020 5.982 0.333 2 A_G2:C31_A A 2 ? A 31 ? 19 1 1 A A 3 1_555 A U 30 1_555 -0.807 -0.307 -0.268 -3.669 3.055 6.922 3 A_A3:U30_A A 3 ? A 30 ? 20 1 1 A C 4 1_555 A G 29 1_555 0.774 -0.143 -0.099 1.019 -3.752 2.922 4 A_C4:G29_A A 4 ? A 29 ? 19 1 1 A C 5 1_555 A G 28 1_555 -0.778 -0.205 -0.774 8.864 0.710 -7.790 5 A_C5:G28_A A 5 ? A 28 ? 19 1 1 A G 6 1_555 A C 27 1_555 -0.746 -0.296 -0.124 1.935 -5.505 0.048 6 A_G6:C27_A A 6 ? A 27 ? 19 1 1 A A 7 1_555 A U 26 1_555 0.078 -0.130 0.184 0.790 -14.854 -6.485 7 A_A7:U26_A A 7 ? A 26 ? 20 1 1 A U 8 1_555 A A 25 1_555 0.141 -0.079 -0.184 5.363 -17.123 0.495 8 A_U8:A25_A A 8 ? A 25 ? 20 1 1 A A 9 1_555 A U 24 1_555 -0.403 -0.316 -0.223 -2.939 -9.306 0.610 9 A_A9:U24_A A 9 ? A 24 ? 20 1 1 A A 10 1_555 A U 23 1_555 -0.408 -0.261 -0.241 -0.693 -5.839 2.876 10 A_A10:U23_A A 10 ? A 23 ? 20 1 1 A G 11 1_555 A C 22 1_555 -0.730 -0.329 -0.494 -8.780 -7.167 0.906 11 A_G11:C22_A A 11 ? A 22 ? 19 1 1 A G 12 1_555 A C 21 1_555 0.213 0.063 -0.059 -6.432 -1.102 3.309 12 A_G12:C21_A A 12 ? A 21 ? 19 1 1 A U 13 1_555 A G 20 1_555 1.820 -0.178 -0.274 -0.859 -4.094 0.207 13 A_U13:G20_A A 13 ? A 20 ? 28 1 1 A A 14 1_555 A U 19 1_555 0.089 -0.244 -0.209 -0.657 1.632 0.641 14 A_A14:U19_A A 14 ? A 19 ? 20 1 1 A G 15 1_555 A A 18 1_555 5.278 -2.670 1.795 3.645 9.600 -39.195 15 A_G15:A18_A A 15 ? A 18 ? 11 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 32 1_555 A G 2 1_555 A C 31 1_555 -0.428 -1.572 3.889 -3.735 18.781 25.360 -6.520 0.060 2.261 36.819 7.322 31.682 1 AA_G1G2:C31C32_AA A 1 ? A 32 ? A 2 ? A 31 ? 1 A G 2 1_555 A C 31 1_555 A A 3 1_555 A U 30 1_555 0.450 -1.210 5.148 2.954 -15.991 22.391 4.120 0.286 4.928 -35.742 -6.602 27.612 2 AA_G2A3:U30C31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A A 3 1_555 A U 30 1_555 A C 4 1_555 A G 29 1_555 -0.233 -0.889 4.841 -4.264 -11.835 30.988 1.471 -0.682 4.839 -21.094 7.600 33.386 3 AA_A3C4:G29U30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A C 4 1_555 A G 29 1_555 A C 5 1_555 A G 28 1_555 -1.417 -1.157 3.979 2.253 -15.629 23.278 2.443 3.618 3.833 -34.152 -4.924 28.067 4 AA_C4C5:G28G29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A C 5 1_555 A G 28 1_555 A G 6 1_555 A C 27 1_555 1.744 -0.563 4.205 0.217 -9.694 36.983 0.743 -2.630 4.225 -14.968 -0.335 38.190 5 AA_C5G6:C27G28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A G 6 1_555 A C 27 1_555 A A 7 1_555 A U 26 1_555 -0.264 -2.054 2.945 -1.211 2.383 31.452 -4.166 0.288 2.794 4.386 2.229 31.562 6 AA_G6A7:U26C27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A A 7 1_555 A U 26 1_555 A U 8 1_555 A A 25 1_555 0.302 -0.996 4.016 2.065 -27.166 36.479 1.977 -0.144 3.858 -37.641 -2.861 45.251 7 AA_A7U8:A25U26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A U 8 1_555 A A 25 1_555 A A 9 1_555 A U 24 1_555 0.781 -1.650 3.893 -3.683 -11.308 26.146 -0.066 -2.640 4.096 -23.509 7.656 28.681 8 AA_U8A9:U24A25_AA A 8 ? A 25 ? A 9 ? A 24 ? 1 A A 9 1_555 A U 24 1_555 A A 10 1_555 A U 23 1_555 -0.859 -0.793 3.906 -1.518 -9.539 36.720 0.282 1.082 4.012 -14.829 2.360 37.927 9 AA_A9A10:U23U24_AA A 9 ? A 24 ? A 10 ? A 23 ? 1 A A 10 1_555 A U 23 1_555 A G 11 1_555 A C 22 1_555 -0.390 -2.311 3.526 0.020 0.489 25.964 -5.288 0.873 3.483 1.089 -0.044 25.969 10 AA_A10G11:C22U23_AA A 10 ? A 23 ? A 11 ? A 22 ? 1 A G 11 1_555 A C 22 1_555 A G 12 1_555 A C 21 1_555 -0.132 -0.330 3.911 -3.616 2.317 42.556 -0.730 -0.251 3.886 3.183 4.967 42.762 11 AA_G11G12:C21C22_AA A 11 ? A 22 ? A 12 ? A 21 ? 1 A G 12 1_555 A C 21 1_555 A U 13 1_555 A G 20 1_555 -0.354 -0.881 2.933 5.088 24.694 34.844 -3.232 0.903 1.874 36.002 -7.418 42.779 12 AA_G12U13:G20C21_AA A 12 ? A 21 ? A 13 ? A 20 ? 1 A U 13 1_555 A G 20 1_555 A A 14 1_555 A U 19 1_555 -0.156 -0.736 4.702 -3.909 -26.271 26.496 4.253 -0.559 3.890 -45.346 6.746 37.347 13 AA_U13A14:U19G20_AA A 13 ? A 20 ? A 14 ? A 19 ? 1 A A 14 1_555 A U 19 1_555 A G 15 1_555 A A 18 1_555 -3.753 -0.797 3.731 -1.904 20.206 50.859 -2.250 3.967 3.345 22.528 2.123 54.508 14 AA_A14G15:A18U19_AA A 14 ? A 19 ? A 15 ? A 18 ? #