HEADER LIPID TRANSPORT 29-AUG-11 2LID TITLE THE POLYSERINE TRACT OF NASONIA VITRIPENNIS VG RESIDUES 351-385 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITELLOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 351-385; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: NASONIA VITRIPENNIS; SOURCE 4 ORGANISM_TAXID: 7425 KEYWDS LIPID TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.HAVUKAINEN,O.HALSKAU JR. REVDAT 2 09-MAR-22 2LID 1 SOURCE LINK REVDAT 1 11-JUL-12 2LID 0 JRNL AUTH H.HAVUKAINEN,J.UNDERHAUG,F.WOLSCHIN,G.AMDAM,O.HALSKAU JRNL TITL A VITELLOGENIN POLYSERINE CLEAVAGE SITE: HIGHLY DISORDERED JRNL TITL 2 CONFORMATION PROTECTED FROM PROTEOLYSIS BY PHOSPHORYLATION. JRNL REF J EXP BIOL V. 215 1837 2012 JRNL REFN JRNL PMID 22573762 JRNL DOI 10.1242/JEB.065623 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 W/V [U-15N]-ILE PROTEIN, 50 REMARK 210 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AV REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 97.59 58.87 REMARK 500 1 ASP A 6 125.17 65.12 REMARK 500 1 GLU A 7 -73.39 -167.45 REMARK 500 1 THR A 9 15.37 59.29 REMARK 500 1 SER A 10 -0.19 -152.06 REMARK 500 1 GLU A 11 -86.68 62.35 REMARK 500 1 SEP A 12 17.34 -157.99 REMARK 500 1 PHE A 13 136.73 -171.41 REMARK 500 1 GLU A 14 73.30 -173.70 REMARK 500 1 ALA A 17 -151.60 -154.91 REMARK 500 1 ASN A 19 -11.56 -146.52 REMARK 500 1 ASP A 22 35.48 -83.41 REMARK 500 1 SER A 23 -37.38 -161.17 REMARK 500 1 LYS A 28 88.27 52.76 REMARK 500 1 GLU A 33 -68.05 -99.94 REMARK 500 1 ALA A 34 75.13 58.08 REMARK 500 2 HIS A 4 -81.89 63.24 REMARK 500 2 SER A 5 -84.69 61.83 REMARK 500 2 GLU A 7 109.91 -176.19 REMARK 500 2 SER A 10 3.56 -159.35 REMARK 500 2 GLU A 11 -74.59 -55.43 REMARK 500 2 PHE A 13 -136.38 -105.52 REMARK 500 2 ALA A 17 -178.61 62.09 REMARK 500 2 ASN A 19 0.17 -172.56 REMARK 500 2 ASN A 20 -30.09 -146.12 REMARK 500 2 LYS A 28 79.85 51.20 REMARK 500 2 GLU A 33 94.12 58.67 REMARK 500 2 ALA A 34 -53.44 -131.52 REMARK 500 3 SER A 5 -71.13 -165.18 REMARK 500 3 ASP A 6 95.50 56.24 REMARK 500 3 GLU A 7 -81.69 -136.68 REMARK 500 3 THR A 9 21.95 43.66 REMARK 500 3 SER A 10 -19.83 -163.89 REMARK 500 3 SEP A 12 -2.49 64.86 REMARK 500 3 PHE A 13 142.54 175.47 REMARK 500 3 GLU A 14 -12.88 -175.59 REMARK 500 3 SER A 15 -164.69 -104.03 REMARK 500 3 ALA A 17 169.90 63.60 REMARK 500 3 ASN A 19 -10.06 -175.41 REMARK 500 3 ASN A 20 -54.30 -122.26 REMARK 500 3 ARG A 27 95.79 56.59 REMARK 500 3 GLU A 33 -32.86 -164.74 REMARK 500 4 HIS A 4 -72.24 -134.94 REMARK 500 4 SER A 5 -36.27 -166.65 REMARK 500 4 ASP A 6 98.66 60.18 REMARK 500 4 GLU A 7 103.89 -170.67 REMARK 500 4 SER A 10 -0.48 -160.86 REMARK 500 4 GLU A 11 -79.26 -51.89 REMARK 500 4 SEP A 12 35.86 -82.57 REMARK 500 4 ALA A 17 121.05 66.85 REMARK 500 REMARK 500 THIS ENTRY HAS 280 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17889 RELATED DB: BMRB REMARK 900 RELATED ID: 2LIC RELATED DB: PDB DBREF 2LID A 1 35 PDB 2LID 2LID 1 35 SEQRES 1 A 35 GLU HIS LYS HIS SER ASP GLU SER THR SER GLU SEP PHE SEQRES 2 A 35 GLU SER ILE ALA ASP ASN ASN ASP ASP SER TYR PHE GLN SEQRES 3 A 35 ARG LYS PRO LYS LEU THR GLU ALA PRO MODRES 2LID SEP A 12 SER PHOSPHOSERINE HET SEP A 12 14 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P HELIX 1 1 ASN A 20 PHE A 25 1 6 LINK C GLU A 11 N SEP A 12 1555 1555 1.32 LINK C SEP A 12 N PHE A 13 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1