HEADER METAL TRANSPORT 31-AUG-11 2LIR TITLE NMR SOLUTION STRUCTURE OF YEAST ISO-1-CYTOCHROME C MUTANT P71H IN TITLE 2 OXIDIZED STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: CYC1, YJR048W, J1653; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PBTR2 KEYWDS CYTOCHROME C, P71H, OXIDIZED, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.LAN,Z.WANG,Z.YANG,J.ZHU,T.YING,X.JIANG,X.ZHANG,H.WU,M.LIU,X.TAN, AUTHOR 2 C.CAO,Z.X.HUANG REVDAT 3 06-NOV-24 2LIR 1 REMARK REVDAT 2 14-JUN-23 2LIR 1 REMARK SEQADV LINK REVDAT 1 07-DEC-11 2LIR 0 JRNL AUTH W.LAN,Z.WANG,Z.YANG,J.ZHU,T.YING,X.JIANG,X.ZHANG,H.WU,M.LIU, JRNL AUTH 2 X.TAN,C.CAO,Z.X.HUANG JRNL TITL CONFORMATIONAL TOGGLING OF YEAST ISO-1-CYTOCHROME C IN THE JRNL TITL 2 OXIDIZED AND REDUCED STATES. JRNL REF PLOS ONE V. 6 27219 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22087268 JRNL DOI 10.1371/JOURNAL.PONE.0027219 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102433. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM ENTITY_1-1, 90% H2O/10% REMARK 210 D2O; 1 MM ENTITY_1-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 18 O PRO A 30 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 13 -66.11 -140.00 REMARK 500 1 LYS A 27 -85.88 -60.99 REMARK 500 1 LEU A 32 -117.95 -80.50 REMARK 500 1 HIS A 33 89.00 73.23 REMARK 500 1 HIS A 71 -4.60 -51.11 REMARK 500 1 ALA A 72 80.92 -160.13 REMARK 500 1 LYS A 73 -78.76 -94.96 REMARK 500 1 ILE A 75 67.93 -117.94 REMARK 500 1 ALA A 81 24.40 -179.34 REMARK 500 1 LEU A 85 25.82 -78.96 REMARK 500 2 ALA A -1 -164.66 -118.10 REMARK 500 2 ARG A 13 -66.85 -138.48 REMARK 500 2 HIS A 26 48.74 -96.64 REMARK 500 2 VAL A 28 -69.89 -97.54 REMARK 500 2 HIS A 33 102.18 -173.71 REMARK 500 2 TYR A 48 -163.80 -69.55 REMARK 500 2 HIS A 71 1.32 -57.65 REMARK 500 2 ALA A 72 84.44 -159.54 REMARK 500 2 LYS A 73 -78.16 -97.83 REMARK 500 2 ALA A 81 18.59 -172.35 REMARK 500 3 ALA A -1 -145.48 -112.27 REMARK 500 3 ARG A 13 -63.02 -147.60 REMARK 500 3 VAL A 20 8.40 50.06 REMARK 500 3 VAL A 28 -74.50 -97.86 REMARK 500 3 HIS A 33 120.60 -172.95 REMARK 500 3 ASN A 70 -158.87 -140.77 REMARK 500 3 ALA A 72 2.65 -173.43 REMARK 500 3 ALA A 81 24.29 179.67 REMARK 500 4 ALA A -1 -144.96 -112.35 REMARK 500 4 ARG A 13 -59.82 -144.03 REMARK 500 4 VAL A 20 -131.93 -97.85 REMARK 500 4 GLU A 21 178.90 49.78 REMARK 500 4 VAL A 28 -93.79 -139.30 REMARK 500 4 PRO A 30 154.57 -44.67 REMARK 500 4 HIS A 33 115.62 -174.53 REMARK 500 4 TYR A 48 -177.79 -69.18 REMARK 500 4 ASN A 70 -156.49 -139.51 REMARK 500 4 ALA A 72 10.43 -152.64 REMARK 500 4 ALA A 81 42.78 176.13 REMARK 500 5 ALA A -1 -142.24 -110.23 REMARK 500 5 ARG A 13 -66.74 -141.41 REMARK 500 5 VAL A 28 -73.40 -93.62 REMARK 500 5 HIS A 33 109.61 177.99 REMARK 500 5 TYR A 48 -175.33 -63.23 REMARK 500 5 HIS A 71 -4.02 -57.91 REMARK 500 5 ALA A 72 47.87 -154.68 REMARK 500 5 ALA A 81 -36.87 -149.95 REMARK 500 6 ARG A 13 -64.63 -138.05 REMARK 500 6 CYS A 17 -85.11 -103.22 REMARK 500 6 VAL A 28 -47.07 -147.66 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 104 NA 90.3 REMARK 620 3 HEC A 104 NB 90.0 90.0 REMARK 620 4 HEC A 104 NC 89.0 179.3 89.7 REMARK 620 5 HEC A 104 ND 88.9 90.1 178.9 90.1 REMARK 620 6 HIS A 71 NE2 179.3 90.2 90.4 90.4 90.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LIT RELATED DB: PDB REMARK 900 RELATED ID: 17903 RELATED DB: BMRB DBREF 2LIR A -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 2LIR HIS A 71 UNP P00044 PRO 77 ENGINEERED MUTATION SEQADV 2LIR ALA A 72 UNP P00044 LYS 78 ENGINEERED MUTATION SEQADV 2LIR THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN HIS ALA LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU HET HEC A 104 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 SER A 2 THR A 12 1 11 HELIX 2 2 ARG A 13 HIS A 18 1 6 HELIX 3 3 GLY A 34 ARG A 38 5 5 HELIX 4 4 THR A 49 LYS A 55 1 7 HELIX 5 5 ASP A 60 ASN A 70 1 11 HELIX 6 6 LYS A 87 GLU A 103 1 17 LINK SG CYS A 14 CAB HEC A 104 1555 1555 1.82 LINK SG CYS A 17 CAC HEC A 104 1555 1555 1.82 LINK NE2 HIS A 18 FE HEC A 104 1555 1555 2.09 LINK NE2 HIS A 71 FE HEC A 104 1555 1555 2.11 SITE 1 AC1 15 CYS A 14 CYS A 17 HIS A 18 PRO A 30 SITE 2 AC1 15 LEU A 32 SER A 40 TYR A 46 TYR A 48 SITE 3 AC1 15 THR A 49 ASN A 52 TRP A 59 MET A 64 SITE 4 AC1 15 TYR A 67 HIS A 71 LEU A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1