HEADER METAL TRANSPORT 31-AUG-11 2LIT TITLE NMR SOLUTION STRUCTURE OF YEAST ISO-1-CYTOCHROME C MUTANT P71H IN TITLE 2 REDUCED STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: CYC1, YJR048W, J1653; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PBTR2 KEYWDS CYTOCHROME C, P71H, REDUCED, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR W.LAN,Z.WANG,Z.YANG,J.ZHU,T.YING,X.JIANG,X.ZHANG,H.WU,M.LIU,X.TAN, AUTHOR 2 C.CAO,Z.X.HUANG REVDAT 3 16-OCT-24 2LIT 1 REMARK REVDAT 2 14-JUN-23 2LIT 1 REMARK SEQADV LINK REVDAT 1 07-DEC-11 2LIT 0 JRNL AUTH W.LAN,Z.WANG,Z.YANG,J.ZHU,T.YING,X.JIANG,X.ZHANG,H.WU,M.LIU, JRNL AUTH 2 X.TAN,C.CAO,Z.X.HUANG JRNL TITL CONFORMATIONAL TOGGLING OF YEAST ISO-1-CYTOCHROME C IN THE JRNL TITL 2 OXIDIZED AND REDUCED STATES. JRNL REF PLOS ONE V. 6 27219 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22087268 JRNL DOI 10.1371/JOURNAL.PONE.0027219 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102434. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM ENTITY_1-1, 90% H2O/10% REMARK 210 D2O; 1 MM ENTITY_1-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 26 H ASN A 31 1.26 REMARK 500 O GLU A 21 H GLY A 23 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A -1 97.78 -61.45 REMARK 500 1 ARG A 13 30.48 -150.52 REMARK 500 1 CYS A 14 9.08 -158.61 REMARK 500 1 CYS A 17 -82.22 -152.55 REMARK 500 1 GLU A 21 27.39 33.66 REMARK 500 1 LYS A 22 -26.29 61.03 REMARK 500 1 LYS A 27 -147.12 59.96 REMARK 500 1 HIS A 39 -167.75 41.44 REMARK 500 1 THR A 49 6.17 -61.67 REMARK 500 1 ASP A 50 -28.97 80.21 REMARK 500 1 ALA A 72 -100.16 163.98 REMARK 500 1 PRO A 76 153.66 -35.74 REMARK 500 2 ALA A -1 98.61 -62.12 REMARK 500 2 ARG A 13 51.61 -152.33 REMARK 500 2 CYS A 14 -18.94 -165.20 REMARK 500 2 GLN A 16 -5.08 -52.47 REMARK 500 2 CYS A 17 -85.94 -144.39 REMARK 500 2 VAL A 20 51.29 -70.00 REMARK 500 2 LYS A 27 -144.01 58.46 REMARK 500 2 LEU A 32 5.74 85.78 REMARK 500 2 ALA A 72 -28.06 74.93 REMARK 500 3 ALA A -1 98.78 57.27 REMARK 500 3 ARG A 13 46.73 -151.71 REMARK 500 3 CYS A 14 -17.07 -164.18 REMARK 500 3 CYS A 17 -82.27 -132.38 REMARK 500 3 HIS A 18 73.85 -61.05 REMARK 500 3 THR A 19 70.95 -64.01 REMARK 500 3 GLU A 21 35.12 29.88 REMARK 500 3 LYS A 27 -121.06 60.04 REMARK 500 3 ARG A 38 155.36 55.51 REMARK 500 3 HIS A 39 168.62 -44.53 REMARK 500 3 GLU A 44 -60.87 -91.01 REMARK 500 3 THR A 49 -2.28 -58.41 REMARK 500 3 ASP A 50 -15.44 78.85 REMARK 500 3 LEU A 58 90.82 57.12 REMARK 500 3 ALA A 72 -29.10 80.17 REMARK 500 3 PRO A 76 -34.37 -29.90 REMARK 500 4 ARG A 13 20.92 -141.62 REMARK 500 4 CYS A 14 67.55 -172.63 REMARK 500 4 LEU A 15 -31.76 -148.15 REMARK 500 4 CYS A 17 -81.82 -101.14 REMARK 500 4 THR A 19 90.84 43.79 REMARK 500 4 LYS A 27 -144.55 -103.14 REMARK 500 4 ARG A 38 -165.30 -104.86 REMARK 500 4 HIS A 39 169.98 -43.76 REMARK 500 4 ALA A 72 -101.81 161.66 REMARK 500 4 PRO A 76 149.35 -31.43 REMARK 500 5 ARG A 13 46.22 -148.04 REMARK 500 5 CYS A 14 36.15 -173.11 REMARK 500 5 LEU A 15 -150.99 -108.83 REMARK 500 REMARK 500 THIS ENTRY HAS 239 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 104 NA 90.1 REMARK 620 3 HEC A 104 NB 89.9 90.1 REMARK 620 4 HEC A 104 NC 89.6 179.6 90.2 REMARK 620 5 HEC A 104 ND 89.8 89.8 179.6 89.8 REMARK 620 6 MET A 80 SD 179.6 90.3 90.1 90.0 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LIR RELATED DB: PDB REMARK 900 RELATED ID: 17904 RELATED DB: BMRB DBREF 2LIT A -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 2LIT HIS A 71 UNP P00044 PRO 77 ENGINEERED MUTATION SEQADV 2LIT ALA A 72 UNP P00044 LYS 78 ENGINEERED MUTATION SEQADV 2LIT THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN HIS ALA LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU HET HEC A 104 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 SER A 2 CYS A 14 1 13 HELIX 2 2 ASP A 50 ASN A 56 1 7 HELIX 3 3 ASP A 60 ASN A 70 1 11 HELIX 4 4 LYS A 87 GLU A 103 1 17 LINK SG CYS A 14 CAB HEC A 104 1555 1555 1.82 LINK SG CYS A 17 CAC HEC A 104 1555 1555 1.81 LINK NE2 HIS A 18 FE HEC A 104 1555 1555 2.10 LINK SD MET A 80 FE HEC A 104 1555 1555 2.43 SITE 1 AC1 15 ARG A 13 CYS A 14 GLN A 16 CYS A 17 SITE 2 AC1 15 HIS A 18 TYR A 46 TYR A 48 TRP A 59 SITE 3 AC1 15 MET A 64 TYR A 67 ILE A 75 PRO A 76 SITE 4 AC1 15 THR A 78 MET A 80 ALA A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 291 1717 CONECT 337 1725 CONECT 351 1695 CONECT 1302 1695 CONECT 1695 351 1302 1700 1711 CONECT 1695 1719 1727 CONECT 1696 1701 1731 1738 CONECT 1697 1704 1712 1739 CONECT 1698 1715 1720 1740 CONECT 1699 1723 1728 1741 CONECT 1700 1695 1701 1704 CONECT 1701 1696 1700 1702 CONECT 1702 1701 1703 1706 CONECT 1703 1702 1704 1705 CONECT 1704 1697 1700 1703 CONECT 1705 1703 1742 1743 1744 CONECT 1706 1702 1707 1745 1746 CONECT 1707 1706 1708 1747 1748 CONECT 1708 1707 1709 1710 CONECT 1709 1708 CONECT 1710 1708 CONECT 1711 1695 1712 1715 CONECT 1712 1697 1711 1713 CONECT 1713 1712 1714 1716 CONECT 1714 1713 1715 1717 CONECT 1715 1698 1711 1714 CONECT 1716 1713 1749 1750 1751 CONECT 1717 291 1714 1718 1752 CONECT 1718 1717 1753 1754 1755 CONECT 1719 1695 1720 1723 CONECT 1720 1698 1719 1721 CONECT 1721 1720 1722 1724 CONECT 1722 1721 1723 1725 CONECT 1723 1699 1719 1722 CONECT 1724 1721 1756 1757 1758 CONECT 1725 337 1722 1726 1759 CONECT 1726 1725 1760 1761 1762 CONECT 1727 1695 1728 1731 CONECT 1728 1699 1727 1729 CONECT 1729 1728 1730 1732 CONECT 1730 1729 1731 1733 CONECT 1731 1696 1727 1730 CONECT 1732 1729 1763 1764 1765 CONECT 1733 1730 1734 1766 1767 CONECT 1734 1733 1735 1768 1769 CONECT 1735 1734 1736 1737 CONECT 1736 1735 CONECT 1737 1735 CONECT 1738 1696 CONECT 1739 1697 CONECT 1740 1698 CONECT 1741 1699 CONECT 1742 1705 CONECT 1743 1705 CONECT 1744 1705 CONECT 1745 1706 CONECT 1746 1706 CONECT 1747 1707 CONECT 1748 1707 CONECT 1749 1716 CONECT 1750 1716 CONECT 1751 1716 CONECT 1752 1717 CONECT 1753 1718 CONECT 1754 1718 CONECT 1755 1718 CONECT 1756 1724 CONECT 1757 1724 CONECT 1758 1724 CONECT 1759 1725 CONECT 1760 1726 CONECT 1761 1726 CONECT 1762 1726 CONECT 1763 1732 CONECT 1764 1732 CONECT 1765 1732 CONECT 1766 1733 CONECT 1767 1733 CONECT 1768 1734 CONECT 1769 1734 MASTER 172 0 1 4 0 0 4 6 889 1 80 9 END