HEADER PROTEIN BINDING 09-SEP-11 2LJ9 TITLE PARTIAL 3D STRUCTURE OF THE C-TERMINAL PART OF THE FREE ARABIDOPSIS TITLE 2 THALIANA CP12-2 IN ITS OXIDIZED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CP12 DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 54-131; COMPND 5 SYNONYM: CP12 PROTEIN-LIKE PROTEIN, PUTATIVE CP12 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G62410, CP12-2, T12C14_110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS HELIX, PROTEIN BINDING, INTRINSICALLY DISORDERED PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.TRIVELLI,F.SPARLA,L.MARRI,P.TROST REVDAT 3 30-OCT-24 2LJ9 1 REMARK SEQADV REVDAT 2 27-JUN-12 2LJ9 1 JRNL REVDAT 1 25-APR-12 2LJ9 0 JRNL AUTH S.FERMANI,X.TRIVELLI,F.SPARLA,A.THUMIGER,M.CALVARESI, JRNL AUTH 2 L.MARRI,G.FALINI,F.ZERBETTO,P.TROST JRNL TITL CONFORMATIONAL SELECTION AND FOLDING-UPON-BINDING OF JRNL TITL 2 INTRINSICALLY DISORDERED PROTEIN CP12 REGULATE JRNL TITL 3 PHOTOSYNTHETIC ENZYMES ASSEMBLY. JRNL REF J.BIOL.CHEM. V. 287 21372 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22514274 JRNL DOI 10.1074/JBC.M112.350355 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROCHECK, CNSSOLVE 1.2.1 REMARK 3 AUTHORS : LASKOWSKI, MACARTHUR, SMITH, JONES, HUTCHINSON, REMARK 3 MORRIS, MOSS (PROCHECK), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] CP12, 5 % [U REMARK 210 -2H] D2O, 0.1-0.2 MM TSP, 95 % REMARK 210 H2O, 25 MM POTASSIUM PHOSPHATE, REMARK 210 0.05 W/V SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 1 MM [U-15N] CP12, 5 % [U- REMARK 210 2H] D2O, 0.1-0.2 MM TSP, 95 % REMARK 210 H2O, 25 MM POTASSIUM PHOSPHATE, REMARK 210 0.05 W/V SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 1 MM CP12, 5 % [U-2H] D2O, REMARK 210 0.1-0.2 MM TSP, 95 % H2O, 25 MM REMARK 210 POTASSIUM PHOSPHATE, 0.05 W/V REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; 1 REMARK 210 MM CP12, 100 % [U-2H] D2O, 0.1- REMARK 210 0.2 MM TSP, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 0.05 W/V SODIUM AZIDE, REMARK 210 100% D2O; 1 MM [U-100% 13C; U- REMARK 210 100% 15N] CP12, 100 % [U-2H] D2O, REMARK 210 0.1-0.2 MM TSP, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 0.05 W/V SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1 REMARK 210 15N TOCSY; HETERONUCLEAR NOE 15N; REMARK 210 HBHANH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNSSOLVE 1.2.1, TOPSPIN 1.3, REMARK 210 NMRPIPE, NMRDRAW, NMRVIEW, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED WITH HOMONUCLEAR NOES AND TALOS- REMARK 210 DERIVED BACKBONE ANGLES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 ILE A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 VAL A 10 REMARK 465 VAL A 11 REMARK 465 GLU A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 GLU A 20 REMARK 465 THR A 21 REMARK 465 CYS A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 ASP A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 CYS A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 TRP A 35 REMARK 465 ASP A 36 REMARK 465 GLU A 37 REMARK 465 VAL A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 LEU A 41 REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 HIS A 47 REMARK 465 ALA A 48 REMARK 465 ARG A 49 REMARK 465 ASP A 50 REMARK 465 LYS A 51 REMARK 465 LYS A 52 REMARK 465 LYS A 53 REMARK 465 ALA A 54 REMARK 465 ASP A 55 REMARK 465 GLY A 56 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 67 H ASN A 71 1.04 REMARK 500 O TYR A 63 HD21 ASN A 67 1.56 REMARK 500 O ASN A 67 N ASN A 71 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 59 -11.11 -48.57 REMARK 500 1 THR A 75 -63.74 -94.42 REMARK 500 2 PRO A 59 -11.66 -48.19 REMARK 500 2 THR A 70 -30.10 -151.73 REMARK 500 2 ASP A 77 162.00 58.33 REMARK 500 3 PRO A 59 -11.19 -48.46 REMARK 500 3 CYS A 73 29.92 -46.77 REMARK 500 3 THR A 75 177.52 47.17 REMARK 500 4 PRO A 59 -11.40 -47.59 REMARK 500 4 ASN A 67 73.72 -113.54 REMARK 500 4 THR A 70 -30.09 -152.77 REMARK 500 4 THR A 75 -163.56 -69.03 REMARK 500 4 TYR A 76 -167.88 -66.83 REMARK 500 5 PRO A 59 -12.01 -47.63 REMARK 500 5 THR A 70 -30.02 -152.62 REMARK 500 5 THR A 75 -167.66 42.95 REMARK 500 6 PRO A 59 -12.76 -46.73 REMARK 500 6 ASN A 67 73.45 -118.10 REMARK 500 6 THR A 70 -29.42 -151.62 REMARK 500 6 THR A 75 -167.34 -102.99 REMARK 500 7 PRO A 59 -12.52 -46.94 REMARK 500 7 THR A 70 -29.99 -152.44 REMARK 500 7 TYR A 76 -169.19 -75.57 REMARK 500 8 PRO A 59 -10.79 -48.70 REMARK 500 8 PRO A 68 -30.79 -38.95 REMARK 500 8 TYR A 76 -175.17 -59.26 REMARK 500 9 PRO A 59 -7.84 -50.07 REMARK 500 9 ASN A 67 73.73 -118.19 REMARK 500 9 THR A 70 -29.55 -151.72 REMARK 500 9 ASP A 77 161.70 57.75 REMARK 500 10 PRO A 59 -10.58 -48.39 REMARK 500 10 THR A 70 -28.40 -141.48 REMARK 500 10 GLU A 72 8.16 -63.59 REMARK 500 10 CYS A 73 32.19 -41.98 REMARK 500 10 THR A 75 -78.00 62.68 REMARK 500 10 TYR A 76 -74.61 -46.45 REMARK 500 11 PRO A 59 -11.36 -48.35 REMARK 500 11 THR A 70 -29.92 -152.33 REMARK 500 11 TYR A 76 -63.55 -99.73 REMARK 500 12 PRO A 59 -10.39 -48.98 REMARK 500 12 PRO A 68 -30.84 -39.26 REMARK 500 12 THR A 75 -160.45 -119.03 REMARK 500 12 TYR A 76 -66.62 -94.29 REMARK 500 13 PRO A 59 -10.52 -48.65 REMARK 500 13 THR A 70 19.38 -141.00 REMARK 500 13 CYS A 73 30.13 -47.06 REMARK 500 13 TYR A 76 -70.64 -104.90 REMARK 500 14 PRO A 59 -11.64 -48.32 REMARK 500 14 ASN A 67 73.55 -118.73 REMARK 500 14 THR A 70 -30.16 -152.44 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17926 RELATED DB: BMRB DBREF 2LJ9 A 1 78 UNP Q9LZP9 Q9LZP9_ARATH 54 131 SEQADV 2LJ9 MET A -20 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 GLY A -19 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 SER A -18 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 SER A -17 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -16 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -15 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -14 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -13 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -12 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -11 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 SER A -10 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 SER A -9 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 GLY A -8 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 LEU A -7 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 VAL A -6 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 PRO A -5 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 ARG A -4 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 GLY A -3 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 SER A -2 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 HIS A -1 UNP Q9LZP9 EXPRESSION TAG SEQADV 2LJ9 MET A 0 UNP Q9LZP9 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 99 LEU VAL PRO ARG GLY SER HIS MET ALA ALA PRO GLU GLY SEQRES 3 A 99 GLY ILE SER ASP VAL VAL GLU LYS SER ILE LYS GLU ALA SEQRES 4 A 99 GLN GLU THR CYS ALA GLY ASP PRO VAL SER GLY GLU CYS SEQRES 5 A 99 VAL ALA ALA TRP ASP GLU VAL GLU GLU LEU SER ALA ALA SEQRES 6 A 99 ALA SER HIS ALA ARG ASP LYS LYS LYS ALA ASP GLY SER SEQRES 7 A 99 ASP PRO LEU GLU GLU TYR CYS LYS ASP ASN PRO GLU THR SEQRES 8 A 99 ASN GLU CYS ARG THR TYR ASP ASN HELIX 1 1 ASP A 58 ASN A 67 1 10 SSBOND 1 CYS A 64 CYS A 73 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1