HEADER RNA 15-SEP-11 2LJJ TITLE THE STRUCTURE OF SUBDOMAIN IV-B FROM THE CVB-3 IRES COMPND MOL_ID: 1; COMPND 2 MOLECULE: IV-B RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBDOMAIN IV-B; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CVB-3 INTERNAL RIBOSOMAL ENTRY SITE SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION, T7 RNA POLYMERASE KEYWDS HAIRPIN, RNA, COXSACKIEVIRUS B3, INTERNAL RIBOSOMAL ENTRY SITE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.IHLE,R.ZELL,M.GOERLACH REVDAT 2 14-JUN-23 2LJJ 1 REMARK REVDAT 1 19-SEP-12 2LJJ 0 JRNL AUTH Y.IHLE JRNL TITL THE STRUCTURE OF SUBDOMAIN IV-B FROM THE CVB-3 IRES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.1, CNS 1.3, CYANA 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102459. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 6.2; 6.2 REMARK 210 IONIC STRENGTH : 50; 50 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] IV-B RNA, 10 REMARK 210 MM POTASSIUM PHOSPHATE, 40 MM REMARK 210 POTASSIUM CHLORIDE, 200 UM EDTA, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] IV-B RNA, 10 MM REMARK 210 POTASSIUM PHOSPHATE, 40 MM REMARK 210 POTASSIUM CHLORIDE, 200 UM EDTA, REMARK 210 100% D2O; 1 MM [U-13C; U-15N]- REMARK 210 GUA,URA IV-B RNA, 10 MM REMARK 210 POTASSIUM PHOSPHATE, 40 MM REMARK 210 POTASSIUM CHLORIDE, 200 UM EDTA, REMARK 210 100% D2O; 1 MM [U-13C; U-15N]- REMARK 210 ADE,CYT IV-B RNA, 10 MM REMARK 210 POTASSIUM PHOSPHATE, 40 MM REMARK 210 POTASSIUM CHLORIDE, 200 UM EDTA, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H15N-NOESY-HSQC; 2D TOCSY; REMARK 210 2D HNN-COSY; 2D 1H1H-NOESY REMARK 210 WATERGATE; 2D 1H-1H NOESY; 2D REMARK 210 15N-HSQC IMINO; 2D 15N-HSQC REMARK 210 AMINO; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H13C-NOESY-HSQC ARO; REMARK 210 3D 1H13C-NOESY-HSQC ALI; 2D HCN REMARK 210 ALI; 2D HCN ARO; 2D HCCH-TOCSY REMARK 210 ADE; 2D H5(C5C4N)H URA; 2D REMARK 210 H5(C5C4N)H CYT; 2D 13C-HSQC-CT REMARK 210 ALI; 2D 13C-HSQC-CT ARO; 1D 31P; REMARK 210 3D 1H1H13C-NOESY-HSQC 13C- REMARK 210 FILTERED; 2D 13C-HSQC ALI; 2D REMARK 210 13C-HSQC ARO; 2D TOCSY(HSQC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA 1.5.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 13 C A 293 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17941 RELATED DB: BMRB DBREF 2LJJ A 290 316 PDB 2LJJ 2LJJ 290 316 SEQRES 1 A 27 G G C C U C A G C A C U A SEQRES 2 A 27 C C C C A G U G U A G G U SEQRES 3 A 27 C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1