data_2LK0 # _entry.id 2LK0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LK0 pdb_00002lk0 10.2210/pdb2lk0/pdb RCSB RCSB102475 ? ? BMRB 17969 ? ? WWPDB D_1000102475 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17969 BMRB unspecified . 2LK1 PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LK0 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Farina, B.' 1 'Pellecchia, M.' 2 # _citation.id primary _citation.title 'Targeting Zinc Finger Domains with Small Molecules: Solution Structure and Binding Studies of the RanBP2-Type Zinc Finger of RBM5.' _citation.journal_abbrev Chembiochem _citation.journal_volume 12 _citation.page_first 2837 _citation.page_last 2845 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22162216 _citation.pdbx_database_id_DOI 10.1002/cbic.201100582 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Farina, B.' 1 ? primary 'Fattorusso, R.' 2 ? primary 'Pellecchia, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA-binding protein 5' 3734.449 1 ? ? 'RanBP2-type zinc finger residues 181-210' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein G15, Putative tumor suppressor LUCA15, RNA-binding motif protein 5, Renal carcinoma antigen NY-REN-9' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)KFEDWLCNKCCLNNFRKRLKCFRCGADKFD(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XKFEDWLCNKCCLNNFRKRLKCFRCGADKFDX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 LYS n 1 3 PHE n 1 4 GLU n 1 5 ASP n 1 6 TRP n 1 7 LEU n 1 8 CYS n 1 9 ASN n 1 10 LYS n 1 11 CYS n 1 12 CYS n 1 13 LEU n 1 14 ASN n 1 15 ASN n 1 16 PHE n 1 17 ARG n 1 18 LYS n 1 19 ARG n 1 20 LEU n 1 21 LYS n 1 22 CYS n 1 23 PHE n 1 24 ARG n 1 25 CYS n 1 26 GLY n 1 27 ALA n 1 28 ASP n 1 29 LYS n 1 30 PHE n 1 31 ASP n 1 32 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM5_HUMAN _struct_ref.pdbx_db_accession P52756 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KFEDWLCNKCCLNNFRKRLKCFRCGADKFD _struct_ref.pdbx_align_begin 181 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LK0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 31 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52756 _struct_ref_seq.db_align_beg 181 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LK0 ACE A 1 ? UNP P52756 ? ? 'expression tag' 0 1 1 2LK0 NH2 A 32 ? UNP P52756 ? ? 'expression tag' 31 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pH 5.7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '100 uM RBM5-ZF1, 150 uM ZINC ION, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LK0 _pdbx_nmr_refine.method 'simulated annealing, Energy minimization' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LK0 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LK0 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin v2.1 1 'Bruker Biospin' 'data analysis' TopSpin v2.1 2 'Keller and Wuthrich' 'chemical shift assignment' CARA v1.5,v1.8 3 'Keller and Wuthrich' 'peak picking' CARA v1.5,v1.8 4 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA v2.1 5 'Guntert, Mumenthaler and Wuthrich' refinement CYANA v2.1 6 Tripos 'energy minimization' SYBYL ? 7 Tripos refinement SYBYL ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LK0 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LK0 _struct.title 'Solution structure and binding studies of the RanBP2-type zinc finger of RBM5' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LK0 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'Zinc finger, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A LYS 2 N ? ? A ACE 0 A LYS 1 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale2 covale both ? A ASP 31 C ? ? ? 1_555 A NH2 32 N ? ? A ASP 30 A NH2 31 1_555 ? ? ? ? ? ? ? 1.350 ? ? metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 7 A ZN 32 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc2 metalc ? ? A CYS 11 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 10 A ZN 32 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc3 metalc ? ? A CYS 22 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 21 A ZN 32 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc4 metalc ? ? A CYS 25 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 24 A ZN 32 1_555 ? ? ? ? ? ? ? 2.373 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 5 ? LEU A 7 ? ASP A 4 LEU A 6 A 2 ASN A 14 ? PHE A 16 ? ASN A 13 PHE A 15 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id TRP _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 6 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id TRP _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 5 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 15 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 14 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 32 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 32' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 7 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 10 . ? 1_555 ? 3 AC1 4 CYS A 22 ? CYS A 21 . ? 1_555 ? 4 AC1 4 CYS A 25 ? CYS A 24 . ? 1_555 ? # _atom_sites.entry_id 2LK0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 LYS 2 1 1 LYS LYS A . n A 1 3 PHE 3 2 2 PHE PHE A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 ASP 5 4 4 ASP ASP A . n A 1 6 TRP 6 5 5 TRP TRP A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 CYS 8 7 7 CYS CYS A . n A 1 9 ASN 9 8 8 ASN ASN A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 CYS 11 10 10 CYS CYS A . n A 1 12 CYS 12 11 11 CYS CYS A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 ASN 14 13 13 ASN ASN A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 CYS 22 21 21 CYS CYS A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 CYS 25 24 24 CYS CYS A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 NH2 32 31 31 NH2 NH2 A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 32 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 11 ? A CYS 10 ? 1_555 115.9 ? 2 SG ? A CYS 8 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 22 ? A CYS 21 ? 1_555 108.8 ? 3 SG ? A CYS 11 ? A CYS 10 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 22 ? A CYS 21 ? 1_555 99.1 ? 4 SG ? A CYS 8 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 25 ? A CYS 24 ? 1_555 101.4 ? 5 SG ? A CYS 11 ? A CYS 10 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 25 ? A CYS 24 ? 1_555 117.4 ? 6 SG ? A CYS 22 ? A CYS 21 ? 1_555 ZN ? B ZN . ? A ZN 32 ? 1_555 SG ? A CYS 25 ? A CYS 24 ? 1_555 114.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-28 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_ref_seq_dif 8 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.value' 11 2 'Structure model' '_struct_conn.pdbx_dist_value' 12 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 2 'Structure model' '_struct_ref_seq_dif.details' 16 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id RBM5-ZF1-1 100 ? uM ? 1 'ZINC ION-2' 150 ? uM ? 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.46 120.30 3.16 0.50 N 2 1 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.45 120.30 3.15 0.50 N 3 2 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 124.10 120.30 3.80 0.50 N 4 3 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.55 120.30 3.25 0.50 N 5 3 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.37 120.30 3.07 0.50 N 6 4 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.81 120.30 3.51 0.50 N 7 4 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 124.01 120.30 3.71 0.50 N 8 5 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 124.14 120.30 3.84 0.50 N 9 5 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 124.03 120.30 3.73 0.50 N 10 6 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.56 120.30 3.26 0.50 N 11 7 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.42 120.30 3.12 0.50 N 12 7 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 124.26 120.30 3.96 0.50 N 13 8 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.66 120.30 3.36 0.50 N 14 8 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.66 120.30 3.36 0.50 N 15 9 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.59 120.30 3.29 0.50 N 16 9 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.45 120.30 3.15 0.50 N 17 9 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.64 120.30 3.34 0.50 N 18 10 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.43 120.30 3.13 0.50 N 19 10 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 124.21 120.30 3.91 0.50 N 20 12 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.42 120.30 3.12 0.50 N 21 12 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.92 120.30 3.62 0.50 N 22 13 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.76 120.30 3.46 0.50 N 23 13 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.65 120.30 3.35 0.50 N 24 14 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.33 120.30 3.03 0.50 N 25 14 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.47 120.30 3.17 0.50 N 26 14 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.68 120.30 3.38 0.50 N 27 15 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.46 120.30 3.16 0.50 N 28 16 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.46 120.30 3.16 0.50 N 29 16 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.96 120.30 3.66 0.50 N 30 17 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.44 120.30 3.14 0.50 N 31 18 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.74 120.30 3.44 0.50 N 32 18 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.34 120.30 3.04 0.50 N 33 18 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 124.12 120.30 3.82 0.50 N 34 19 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.83 120.30 3.53 0.50 N 35 19 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.34 120.30 3.04 0.50 N 36 20 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.74 120.30 3.44 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 3 ? ? 70.59 61.22 2 1 LYS A 9 ? ? -134.08 -62.10 3 1 ARG A 18 ? ? -57.77 170.75 4 2 GLU A 3 ? ? 71.73 65.12 5 2 LYS A 9 ? ? -139.31 -59.51 6 3 PHE A 2 ? ? -91.00 50.94 7 3 GLU A 3 ? ? -160.06 61.02 8 3 ASN A 8 ? ? -96.45 30.92 9 3 LYS A 9 ? ? -141.28 -56.34 10 4 GLU A 3 ? ? 68.24 64.38 11 4 LYS A 9 ? ? -139.61 -64.50 12 4 ARG A 23 ? ? -130.77 -56.27 13 5 PHE A 2 ? ? -92.04 45.98 14 5 GLU A 3 ? ? -151.31 60.00 15 5 ASP A 4 ? ? -59.87 178.52 16 5 LYS A 9 ? ? -137.69 -59.24 17 6 PHE A 2 ? ? -89.82 35.45 18 6 GLU A 3 ? ? -168.45 56.65 19 6 LYS A 9 ? ? -134.31 -59.56 20 6 LYS A 20 ? ? -174.69 139.22 21 7 GLU A 3 ? ? 72.00 64.51 22 7 LYS A 9 ? ? -135.19 -59.97 23 8 GLU A 3 ? ? -167.14 62.33 24 8 ASN A 8 ? ? -97.87 30.39 25 8 LYS A 9 ? ? -140.22 -52.58 26 8 LYS A 17 ? ? 177.34 -49.16 27 9 PHE A 2 ? ? -91.45 50.21 28 9 GLU A 3 ? ? -158.70 57.25 29 9 LYS A 9 ? ? -140.16 -51.08 30 9 LYS A 20 ? ? -173.35 130.35 31 10 GLU A 3 ? ? -159.94 60.65 32 10 LYS A 9 ? ? -139.02 -59.68 33 11 GLU A 3 ? ? 65.42 64.59 34 11 LYS A 9 ? ? -131.12 -64.59 35 12 GLU A 3 ? ? 71.03 63.93 36 12 LYS A 9 ? ? -140.31 -51.94 37 12 ARG A 23 ? ? -98.72 -64.77 38 13 GLU A 3 ? ? 65.14 67.62 39 13 LYS A 9 ? ? -137.81 -58.83 40 14 PHE A 2 ? ? -92.72 50.16 41 14 GLU A 3 ? ? -163.89 63.76 42 14 LYS A 9 ? ? -131.77 -61.24 43 14 ARG A 23 ? ? -90.49 -63.05 44 15 GLU A 3 ? ? 67.45 66.69 45 15 ASN A 8 ? ? -95.79 33.18 46 15 LYS A 9 ? ? -140.65 -59.92 47 15 LYS A 20 ? ? -177.15 149.54 48 16 GLU A 3 ? ? 65.54 65.57 49 16 LYS A 9 ? ? -137.81 -53.43 50 16 LYS A 20 ? ? -173.41 129.88 51 17 GLU A 3 ? ? 64.35 66.15 52 17 LYS A 9 ? ? -136.19 -60.70 53 18 GLU A 3 ? ? -177.03 77.84 54 18 LYS A 9 ? ? -138.28 -56.79 55 18 ARG A 23 ? ? -93.88 -62.21 56 19 PHE A 2 ? ? -88.92 37.92 57 19 GLU A 3 ? ? -167.90 62.59 58 19 ASN A 8 ? ? -97.32 31.43 59 19 LYS A 9 ? ? -141.93 -58.92 60 20 GLU A 3 ? ? 65.77 64.89 61 20 LYS A 9 ? ? -135.99 -58.37 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #