HEADER LIPID BINDING PROTEIN 13-OCT-11 2LKK TITLE HUMAN L-FABP IN COMPLEX WITH OLEATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN, LIVER; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FATTY ACID-BINDING PROTEIN 1, LIVER-TYPE FATTY ACID-BINDING COMPND 5 PROTEIN, L-FABP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FABP1, FABPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MG1655; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMON KEYWDS LIPID BINDING PROTEIN, FATTY ACID CARRIER, HOLO FORM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.CAI,C.LUECKE,Z.CHEN,Y.QIAO,E.S.KLIMTCHUK,J.A.HAMILTON REVDAT 3 01-MAY-24 2LKK 1 REMARK REVDAT 2 23-JAN-13 2LKK 1 JRNL REVDAT 1 20-JUN-12 2LKK 0 JRNL AUTH J.CAI,C.LUCKE,Z.CHEN,Y.QIAO,E.KLIMTCHUK,J.A.HAMILTON JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF HUMAN LIVER JRNL TITL 2 FATTY ACID BINDING PROTEIN: FATTY ACID BINDING REVISITED. JRNL REF BIOPHYS.J. V. 102 2585 2012 JRNL REFN ISSN 0006-3495 JRNL PMID 22713574 JRNL DOI 10.1016/J.BPJ.2012.04.039 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, DISCOVER 2000 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 ACCELRYS SOFTWARE INC. (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000102494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 283 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 150 REMARK 210 MM SODIUM CHLORIDE, 0.05 % REMARK 210 SODIUM AZIDE, 3 MM HUMAN LIVER REMARK 210 FATTY ACID BINDING PROTEIN, 15 REMARK 210 MM [U-13C] POTASSIUM OLEATE, 95 % REMARK 210 H2O, 5 % D2O, 95% H2O/5% D2O; REMARK 210 20 MM POTASSIUM PHOSPHATE, 150 REMARK 210 MM SODIUM CHLORIDE, 0.05 % REMARK 210 SODIUM AZIDE, 2 MM [U-15N] HUMAN REMARK 210 LIVER FATTY ACID BINDING PROTEIN, REMARK 210 10 MM POTASSIUM OLEATE, 95 % REMARK 210 H2O, 5 % D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER 2000, NMRVIEW 8.0, REMARK 210 XWINNMR 3.5, TOPSPIN 1.3 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : FINAL MD STEPS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 56 O2 OLA A 128 1.36 REMARK 500 HG SER A 124 O2 OLA A 129 1.36 REMARK 500 HG SER A 39 O1 OLA A 129 1.38 REMARK 500 OE1 GLU A 40 HG1 THR A 51 1.39 REMARK 500 HZ1 LYS A 6 OE2 GLU A 40 1.49 REMARK 500 HZ2 LYS A 90 OE2 GLU A 103 1.52 REMARK 500 OE2 GLU A 70 HZ3 LYS A 78 1.53 REMARK 500 O VAL A 82 HG1 THR A 93 1.53 REMARK 500 OE2 GLU A 68 HZ2 LYS A 80 1.54 REMARK 500 HZ3 LYS A 20 OE2 GLU A 26 1.55 REMARK 500 HZ3 LYS A 31 O1 OLA A 128 1.56 REMARK 500 O ILE A 22 HG1 THR A 75 1.58 REMARK 500 HG1 THR A 102 OD1 ASN A 111 1.58 REMARK 500 OE2 GLU A 27 HZ1 LYS A 31 1.58 REMARK 500 HZ1 LYS A 57 OE1 GLU A 72 1.59 REMARK 500 HZ2 LYS A 33 OD2 ASP A 34 1.59 REMARK 500 HG1 THR A 110 O ARG A 122 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 1 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 2 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 3 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 4 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 4 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 5 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 6 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 6 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 7 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 8 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 8 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 9 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 9 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 9 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 10 HIS A 47 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 10 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 10 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 13 -101.43 -81.09 REMARK 500 1 ASN A 44 66.83 -114.26 REMARK 500 1 GLU A 77 -81.36 -165.34 REMARK 500 1 LYS A 78 112.56 -161.23 REMARK 500 1 ASN A 89 -27.57 -145.30 REMARK 500 1 PHE A 95 -134.03 -87.54 REMARK 500 1 LEU A 115 78.67 -112.78 REMARK 500 2 GLU A 13 -101.47 -81.43 REMARK 500 2 ASN A 44 66.51 -114.02 REMARK 500 2 GLU A 77 -81.32 -165.34 REMARK 500 2 LYS A 78 112.78 -161.27 REMARK 500 2 ASN A 89 -28.76 -145.01 REMARK 500 2 PHE A 95 -134.28 -87.79 REMARK 500 2 LEU A 115 78.68 -112.73 REMARK 500 3 GLU A 13 -101.46 -81.37 REMARK 500 3 ASN A 44 66.52 -114.02 REMARK 500 3 GLU A 77 -81.36 -165.38 REMARK 500 3 LYS A 78 112.82 -161.28 REMARK 500 3 ASN A 89 -28.64 -144.96 REMARK 500 3 PHE A 95 -134.25 -87.77 REMARK 500 3 LEU A 115 78.71 -112.72 REMARK 500 4 GLU A 13 -101.45 -81.34 REMARK 500 4 ASN A 44 66.56 -114.00 REMARK 500 4 GLU A 77 -81.31 -165.37 REMARK 500 4 LYS A 78 112.76 -161.30 REMARK 500 4 ASN A 89 -28.62 -144.93 REMARK 500 4 PHE A 95 -134.25 -87.80 REMARK 500 4 LEU A 115 78.75 -112.70 REMARK 500 5 GLU A 13 -101.49 -81.33 REMARK 500 5 ASN A 44 66.56 -114.04 REMARK 500 5 GLU A 77 -81.37 -165.33 REMARK 500 5 LYS A 78 112.78 -161.24 REMARK 500 5 ASN A 89 -28.60 -144.99 REMARK 500 5 PHE A 95 -134.21 -87.82 REMARK 500 5 LEU A 115 78.70 -112.69 REMARK 500 6 GLU A 13 -101.72 -81.98 REMARK 500 6 ASN A 44 67.26 -114.83 REMARK 500 6 GLU A 77 -81.01 -165.66 REMARK 500 6 LYS A 78 111.77 -161.42 REMARK 500 6 ASN A 89 -29.76 -145.34 REMARK 500 6 PHE A 95 -135.93 -88.95 REMARK 500 6 LEU A 115 78.57 -112.50 REMARK 500 7 GLU A 13 -101.44 -81.43 REMARK 500 7 ASN A 44 66.56 -114.05 REMARK 500 7 GLU A 77 -81.37 -165.39 REMARK 500 7 LYS A 78 112.76 -161.27 REMARK 500 7 ASN A 89 -28.78 -144.96 REMARK 500 7 PHE A 95 -134.26 -87.77 REMARK 500 7 LEU A 115 78.72 -112.70 REMARK 500 8 GLU A 13 -101.47 -81.41 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17302 RELATED DB: BMRB REMARK 900 HUMAN APO L-FABP ASSIGNMENT REMARK 900 RELATED ID: 15429 RELATED DB: BMRB REMARK 900 RAT APO L-FABP ASSIGNMENT REMARK 900 RELATED ID: 15433 RELATED DB: BMRB REMARK 900 RAT HOLO L-FABP ASSIGNMENT REMARK 900 RELATED ID: 1LFO RELATED DB: PDB REMARK 900 RAT HOLO L-FABP X-RAY STRUCTURE REMARK 900 RELATED ID: 2JU3 RELATED DB: PDB REMARK 900 RAT APO L-FABP SOLUTION STRUCTURE REMARK 900 RELATED ID: 2JU7 RELATED DB: PDB REMARK 900 RAT HOLO L-FABP SOLUTION STRUCTURE REMARK 900 RELATED ID: 2F73 RELATED DB: PDB REMARK 900 HUMAN L-FABP X-RAY STRUCTURE REMARK 900 RELATED ID: 2PY1 RELATED DB: PDB REMARK 900 HUMAN L-FABP SOLUTION STRUCTURE REMARK 900 RELATED ID: 17303 RELATED DB: BMRB REMARK 900 HUMAN HOLO L-FABP ASSIGNMENT REMARK 900 RELATED ID: 2L67 RELATED DB: PDB REMARK 900 HUMAN APO L-FABP SOLUTION STRUCTURE REMARK 900 RELATED ID: 2L68 RELATED DB: PDB REMARK 900 HUMAN HOLO L-FABP SOLUTION STRUCTURE REMARK 900 RELATED ID: 3STN RELATED DB: PDB REMARK 900 HUMAN APO L-FABP X-RAY STRUCTURE REMARK 900 RELATED ID: 3STK RELATED DB: PDB REMARK 900 HUMAN HOLO L-FABP X-RAY STRUCTURE DBREF 2LKK A 2 127 UNP P07148 FABPL_HUMAN 2 127 SEQRES 1 A 126 SER PHE SER GLY LYS TYR GLN LEU GLN SER GLN GLU ASN SEQRES 2 A 126 PHE GLU ALA PHE MET LYS ALA ILE GLY LEU PRO GLU GLU SEQRES 3 A 126 LEU ILE GLN LYS GLY LYS ASP ILE LYS GLY VAL SER GLU SEQRES 4 A 126 ILE VAL GLN ASN GLY LYS HIS PHE LYS PHE THR ILE THR SEQRES 5 A 126 ALA GLY SER LYS VAL ILE GLN ASN GLU PHE THR VAL GLY SEQRES 6 A 126 GLU GLU CYS GLU LEU GLU THR MET THR GLY GLU LYS VAL SEQRES 7 A 126 LYS THR VAL VAL GLN LEU GLU GLY ASP ASN LYS LEU VAL SEQRES 8 A 126 THR THR PHE LYS ASN ILE LYS SER VAL THR GLU LEU ASN SEQRES 9 A 126 GLY ASP ILE ILE THR ASN THR MET THR LEU GLY ASP ILE SEQRES 10 A 126 VAL PHE LYS ARG ILE SER LYS ARG ILE HET OLA A 128 53 HET OLA A 129 53 HETNAM OLA OLEIC ACID FORMUL 2 OLA 2(C18 H34 O2) HELIX 1 1 PHE A 15 ILE A 22 1 8 HELIX 2 2 GLU A 26 ASP A 34 1 9 SHEET 1 A 9 LYS A 57 THR A 64 0 SHEET 2 A 9 HIS A 47 ALA A 54 -1 N ILE A 52 O ILE A 59 SHEET 3 A 9 VAL A 38 ASN A 44 -1 N GLU A 40 O THR A 51 SHEET 4 A 9 GLY A 5 GLU A 13 -1 N GLY A 5 O ILE A 41 SHEET 5 A 9 ILE A 118 ARG A 126 -1 O ILE A 123 N GLN A 10 SHEET 6 A 9 THR A 110 LEU A 115 -1 N MET A 113 O PHE A 120 SHEET 7 A 9 LYS A 99 GLU A 103 -1 N GLU A 103 O THR A 110 SHEET 8 A 9 LYS A 90 THR A 94 -1 N LEU A 91 O THR A 102 SHEET 9 A 9 GLN A 84 GLU A 86 -1 N GLN A 84 O VAL A 92 SHEET 1 B 2 GLU A 68 GLU A 72 0 SHEET 2 B 2 VAL A 79 VAL A 82 -1 O VAL A 79 N LEU A 71 SITE 1 AC1 8 PHE A 15 MET A 19 LEU A 28 LYS A 31 SITE 2 AC1 8 ALA A 54 SER A 56 MET A 74 OLA A 129 SITE 1 AC2 10 SER A 39 ILE A 52 LEU A 71 PHE A 95 SITE 2 AC2 10 THR A 102 ASN A 111 MET A 113 ARG A 122 SITE 3 AC2 10 SER A 124 OLA A 128 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1