HEADER TRANSCRIPTION REGULATOR 18-OCT-11 2LKP TITLE SOLUTION STRUCTURE OF APO-NMTR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR NMTR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-120; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: NMTR, RV3744; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS SYMMETRIC HOMODIMER, NI(II) BINDING PROTEIN, DNA BINDING PROTEIN, KEYWDS 2 TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR C.LEE,D.GIEDROC REVDAT 3 14-JUN-23 2LKP 1 REMARK REVDAT 2 06-APR-22 2LKP 1 COMPND SOURCE REMARK DBREF REVDAT 1 18-APR-12 2LKP 0 JRNL AUTH C.W.LEE,D.K.CHAKRAVORTY,F.M.CHANG,H.REYES-CABALLERO,Y.YE, JRNL AUTH 2 K.M.MERZ,D.P.GIEDROC JRNL TITL SOLUTION STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NMTR IN THE JRNL TITL 2 APO STATE: INSIGHTS INTO NI(II)-MEDIATED ALLOSTERY. JRNL REF BIOCHEMISTRY V. 51 2619 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22394357 JRNL DOI 10.1021/BI3001402 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, XPLOR-NIH REMARK 3 AUTHORS : VARIAN (VNMRJ), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102499. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-13C; U-15N] PROTEIN, REMARK 210 90% H2O/10% D2O; 0.5-1 MM [U-13C; REMARK 210 U-15N] PROTEIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 190 H GLY B 197 1.25 REMARK 500 HH12 ARG A 71 H GLY A 78 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 9 45.65 -144.05 REMARK 500 1 ALA A 31 -126.84 -58.08 REMARK 500 1 THR A 32 108.22 54.04 REMARK 500 1 LEU A 47 145.03 -175.14 REMARK 500 1 MET A 58 77.01 61.27 REMARK 500 1 GLU A 59 21.57 -150.29 REMARK 500 1 LEU A 75 -29.47 67.29 REMARK 500 1 HIS A 107 -70.31 -52.24 REMARK 500 1 LEU A 108 -136.21 -118.79 REMARK 500 1 HIS A 109 65.76 -157.67 REMARK 500 1 ARG A 115 105.90 -57.12 REMARK 500 1 ASN B 128 47.56 -144.05 REMARK 500 1 ALA B 150 -126.04 -57.57 REMARK 500 1 THR B 151 108.22 54.35 REMARK 500 1 LEU B 166 146.46 -174.85 REMARK 500 1 MET B 177 78.15 61.38 REMARK 500 1 GLU B 178 23.09 -150.56 REMARK 500 1 LEU B 194 -29.82 67.86 REMARK 500 1 HIS B 226 -70.17 -52.03 REMARK 500 1 LEU B 227 -134.08 -118.50 REMARK 500 1 HIS B 228 65.05 -160.39 REMARK 500 1 ARG B 234 104.58 -59.88 REMARK 500 2 ARG A 8 80.83 48.65 REMARK 500 2 ARG A 10 75.81 46.24 REMARK 500 2 ALA A 13 -44.77 -173.45 REMARK 500 2 ALA A 31 -73.10 -38.76 REMARK 500 2 THR A 32 110.99 -4.53 REMARK 500 2 ARG A 43 -30.04 -35.76 REMARK 500 2 PRO A 48 91.73 -62.42 REMARK 500 2 ILE A 56 -10.28 -156.89 REMARK 500 2 MET A 58 25.82 45.55 REMARK 500 2 GLU A 59 84.50 -171.73 REMARK 500 2 HIS A 109 43.47 -173.70 REMARK 500 2 ASP A 114 72.06 44.60 REMARK 500 2 ARG A 115 88.01 -56.01 REMARK 500 2 SER A 118 -30.09 -145.20 REMARK 500 2 ARG B 127 80.42 50.17 REMARK 500 2 ARG B 129 75.05 44.70 REMARK 500 2 ALA B 132 -44.83 -176.18 REMARK 500 2 ALA B 150 -72.87 -39.19 REMARK 500 2 THR B 151 110.30 -4.77 REMARK 500 2 ARG B 162 -30.63 -36.48 REMARK 500 2 PRO B 167 91.83 -63.02 REMARK 500 2 ILE B 175 -9.76 -156.63 REMARK 500 2 MET B 177 26.37 45.43 REMARK 500 2 GLU B 178 85.34 -172.60 REMARK 500 2 HIS B 228 44.97 -173.40 REMARK 500 2 ASP B 233 78.89 43.57 REMARK 500 2 ARG B 234 85.52 -60.68 REMARK 500 2 SER B 237 -22.08 -141.74 REMARK 500 REMARK 500 THIS ENTRY HAS 547 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18003 RELATED DB: BMRB DBREF 2LKP A 2 120 UNP O69711 NMTR_MYCTU 2 120 DBREF 2LKP B 121 239 UNP O69711 NMTR_MYCTU 2 120 SEQRES 1 A 119 GLY HIS GLY VAL GLU GLY ARG ASN ARG PRO SER ALA PRO SEQRES 2 A 119 LEU ASP SER GLN ALA ALA ALA GLN VAL ALA SER THR LEU SEQRES 3 A 119 GLN ALA LEU ALA THR PRO SER ARG LEU MET ILE LEU THR SEQRES 4 A 119 GLN LEU ARG ASN GLY PRO LEU PRO VAL THR ASP LEU ALA SEQRES 5 A 119 GLU ALA ILE GLY MET GLU GLN SER ALA VAL SER HIS GLN SEQRES 6 A 119 LEU ARG VAL LEU ARG ASN LEU GLY LEU VAL VAL GLY ASP SEQRES 7 A 119 ARG ALA GLY ARG SER ILE VAL TYR SER LEU TYR ASP THR SEQRES 8 A 119 HIS VAL ALA GLN LEU LEU ASP GLU ALA ILE TYR HIS SER SEQRES 9 A 119 GLU HIS LEU HIS LEU GLY LEU SER ASP ARG HIS PRO SER SEQRES 10 A 119 ALA GLY SEQRES 1 B 119 GLY HIS GLY VAL GLU GLY ARG ASN ARG PRO SER ALA PRO SEQRES 2 B 119 LEU ASP SER GLN ALA ALA ALA GLN VAL ALA SER THR LEU SEQRES 3 B 119 GLN ALA LEU ALA THR PRO SER ARG LEU MET ILE LEU THR SEQRES 4 B 119 GLN LEU ARG ASN GLY PRO LEU PRO VAL THR ASP LEU ALA SEQRES 5 B 119 GLU ALA ILE GLY MET GLU GLN SER ALA VAL SER HIS GLN SEQRES 6 B 119 LEU ARG VAL LEU ARG ASN LEU GLY LEU VAL VAL GLY ASP SEQRES 7 B 119 ARG ALA GLY ARG SER ILE VAL TYR SER LEU TYR ASP THR SEQRES 8 B 119 HIS VAL ALA GLN LEU LEU ASP GLU ALA ILE TYR HIS SER SEQRES 9 B 119 GLU HIS LEU HIS LEU GLY LEU SER ASP ARG HIS PRO SER SEQRES 10 B 119 ALA GLY HELIX 1 1 LEU A 15 ALA A 31 1 17 HELIX 2 2 THR A 32 GLY A 45 1 14 HELIX 3 3 PRO A 48 GLY A 57 1 10 HELIX 4 4 GLU A 59 GLY A 74 1 16 HELIX 5 5 ASP A 91 LEU A 108 1 18 HELIX 6 6 LEU B 134 ALA B 150 1 17 HELIX 7 7 THR B 151 GLY B 164 1 14 HELIX 8 8 PRO B 167 GLY B 176 1 10 HELIX 9 9 GLU B 178 GLY B 193 1 16 HELIX 10 10 ASP B 210 LEU B 227 1 18 SHEET 1 A 2 VAL A 76 ALA A 81 0 SHEET 2 A 2 SER A 84 LEU A 89 -1 O SER A 88 N VAL A 77 SHEET 1 B 2 VAL B 195 ALA B 200 0 SHEET 2 B 2 SER B 203 LEU B 208 -1 O SER B 207 N VAL B 196 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1