HEADER HYDROLASE 21-OCT-11 2LKT TITLE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN TIG3 IN 2 M UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RESPONDER PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NLPC/P60 STRUCTURAL DOMAIN; COMPND 5 SYNONYM: RAR-RESPONSIVE PROTEIN TIG3, RETINOID-INDUCIBLE GENE 1 COMPND 6 PROTEIN, TAZAROTENE-INDUCED GENE 3 PROTEIN; COMPND 7 EC: 3.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-21A KEYWDS TIG3, HUMAN TUMOR SUPPRESSOR II FAMILY, NLPC/P60, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.WANG,W.YU,B.XIA REVDAT 1 24-OCT-12 2LKT 0 JRNL AUTH L.WANG,W.YU,X.REN,J.LIN,C.JIN,B.XIA JRNL TITL (1)H, (13)C, AND (15)N RESONANCE ASSIGNMENTS OF THE JRNL TITL 2 N-TERMINAL DOMAIN OF HUMAN TIG3 JRNL REF BIOMOL.NMR ASSIGN. V. 6 201 2012 JRNL REFN ISSN 1874-2718 JRNL PMID 22290676 JRNL DOI 10.1007/S12104-012-9357-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9.0 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING AMBER FF03 FORCE FILED REFINEMENT REMARK 4 REMARK 4 2LKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB102503. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] TIG3N REMARK 210 PROTEIN-1, 50 MM SODIUM PHOSPHATE REMARK 210 -2, 50 MM SODIUM CHLORIDE-3, 20 REMARK 210 MM DTT-4, 2 M UREA-5, 95 % H2O-6, REMARK 210 5 % [U-2H] D2O-7, 0.01 % DSS-8, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, DYANA 3.0, NMRDRAW, REMARK 210 NMRPIPE, NMRVIEW 5.0, REMARK 210 PROCHECKNMR, SANE, TOPSPIN 3.0, REMARK 210 TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 3 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 5 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 5 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 6 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 7 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 8 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 8 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 10 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 11 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 11 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 15 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 16 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 18 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 19 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 19 -159.94 -161.62 REMARK 500 1 ASP A 30 90.67 -68.41 REMARK 500 1 VAL A 50 129.07 -172.81 REMARK 500 1 PHE A 51 -57.46 -131.42 REMARK 500 1 ASN A 77 64.89 -152.73 REMARK 500 1 TYR A 84 -52.98 -162.93 REMARK 500 1 ARG A 87 119.64 68.64 REMARK 500 1 LYS A 105 -32.88 -152.83 REMARK 500 1 ARG A 121 -94.98 -69.50 REMARK 500 1 TYR A 122 -6.99 70.77 REMARK 500 2 ARG A 18 31.24 -81.58 REMARK 500 2 LEU A 19 72.76 82.53 REMARK 500 2 ASP A 30 96.18 -57.68 REMARK 500 2 GLU A 41 45.18 -76.15 REMARK 500 2 VAL A 50 129.22 73.35 REMARK 500 2 SER A 52 -88.29 -93.52 REMARK 500 2 ASN A 77 -80.85 -130.35 REMARK 500 2 TYR A 84 -71.55 -157.70 REMARK 500 2 LYS A 105 41.06 -150.46 REMARK 500 2 SER A 107 -169.83 -172.10 REMARK 500 3 LEU A 19 -129.48 -148.79 REMARK 500 3 SER A 52 -83.15 -160.82 REMARK 500 3 ASN A 56 -145.87 -163.68 REMARK 500 3 ASN A 77 70.12 -158.01 REMARK 500 3 TYR A 84 -36.41 -148.76 REMARK 500 3 PRO A 86 54.99 -94.60 REMARK 500 3 LYS A 105 -38.92 -161.96 REMARK 500 3 ARG A 121 34.44 -140.35 REMARK 500 3 LYS A 124 -22.63 91.72 REMARK 500 4 GLU A 22 106.52 68.28 REMARK 500 4 ASP A 30 -20.51 62.23 REMARK 500 4 LEU A 54 -32.52 -130.77 REMARK 500 4 SER A 55 -70.86 -80.87 REMARK 500 4 ASN A 56 -58.15 64.69 REMARK 500 4 ARG A 87 117.61 69.18 REMARK 500 4 LYS A 105 -152.33 -154.28 REMARK 500 4 TYR A 106 -53.77 72.35 REMARK 500 4 LYS A 124 -19.94 -145.56 REMARK 500 5 LEU A 19 -144.44 -165.46 REMARK 500 5 ASP A 30 -19.56 63.39 REMARK 500 5 SER A 49 -28.94 70.46 REMARK 500 5 PHE A 51 49.14 -154.65 REMARK 500 5 LEU A 54 -73.54 -150.66 REMARK 500 5 GLU A 63 -165.62 -178.78 REMARK 500 5 TYR A 84 -64.64 -122.03 REMARK 500 5 ARG A 87 96.48 81.21 REMARK 500 5 LYS A 105 -32.80 -158.61 REMARK 500 5 SER A 107 -179.04 76.76 REMARK 500 6 GLU A 7 105.04 -171.07 REMARK 500 6 LEU A 19 37.81 -148.38 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 84 GLN A 85 2 -145.68 REMARK 500 TYR A 84 GLN A 85 3 -137.19 REMARK 500 TYR A 84 GLN A 85 4 -133.14 REMARK 500 TYR A 84 GLN A 85 5 -135.49 REMARK 500 TYR A 84 GLN A 85 8 -134.61 REMARK 500 TYR A 84 GLN A 85 10 -139.50 REMARK 500 TYR A 84 GLN A 85 11 -134.06 REMARK 500 TYR A 84 GLN A 85 12 -143.07 REMARK 500 TYR A 84 GLN A 85 13 -132.61 REMARK 500 TYR A 84 GLN A 85 14 -140.62 REMARK 500 TYR A 84 GLN A 85 15 -145.08 REMARK 500 TYR A 84 GLN A 85 17 -133.24 REMARK 500 TYR A 84 GLN A 85 18 -149.16 REMARK 500 TYR A 84 GLN A 85 19 -138.52 REMARK 500 TYR A 84 GLN A 85 20 -139.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 121 0.10 SIDE CHAIN REMARK 500 4 TYR A 27 0.08 SIDE CHAIN REMARK 500 5 TYR A 27 0.07 SIDE CHAIN REMARK 500 5 ARG A 121 0.08 SIDE CHAIN REMARK 500 7 TYR A 27 0.09 SIDE CHAIN REMARK 500 10 TYR A 27 0.10 SIDE CHAIN REMARK 500 13 TYR A 27 0.10 SIDE CHAIN REMARK 500 15 TYR A 27 0.07 SIDE CHAIN REMARK 500 16 TYR A 27 0.07 SIDE CHAIN REMARK 500 17 TYR A 27 0.08 SIDE CHAIN REMARK 500 17 ARG A 121 0.09 SIDE CHAIN REMARK 500 20 TYR A 27 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18012 RELATED DB: BMRB DBREF 2LKT A 1 125 UNP Q9UL19 TIG3_HUMAN 1 125 SEQRES 1 A 125 MET ALA SER PRO HIS GLN GLU PRO LYS PRO GLY ASP LEU SEQRES 2 A 125 ILE GLU ILE PHE ARG LEU GLY TYR GLU HIS TRP ALA LEU SEQRES 3 A 125 TYR ILE GLY ASP GLY TYR VAL ILE HIS LEU ALA PRO PRO SEQRES 4 A 125 SER GLU TYR PRO GLY ALA GLY SER SER SER VAL PHE SER SEQRES 5 A 125 VAL LEU SER ASN SER ALA GLU VAL LYS ARG GLU ARG LEU SEQRES 6 A 125 GLU ASP VAL VAL GLY GLY CYS CYS TYR ARG VAL ASN ASN SEQRES 7 A 125 SER LEU ASP HIS GLU TYR GLN PRO ARG PRO VAL GLU VAL SEQRES 8 A 125 ILE ILE SER SER ALA LYS GLU MET VAL GLY GLN LYS MET SEQRES 9 A 125 LYS TYR SER ILE VAL SER ARG ASN CYS GLU HIS PHE VAL SEQRES 10 A 125 THR GLN LEU ARG TYR GLY LYS SER HELIX 1 1 LEU A 65 GLY A 70 1 6 HELIX 2 2 ASN A 78 TYR A 84 1 7 HELIX 3 3 PRO A 88 VAL A 100 1 13 HELIX 4 4 ILE A 108 TYR A 122 1 15 SHEET 1 A 6 CYS A 73 VAL A 76 0 SHEET 2 A 6 LEU A 13 PHE A 17 -1 N GLU A 15 O ARG A 75 SHEET 3 A 6 HIS A 23 GLY A 29 -1 O HIS A 23 N ILE A 16 SHEET 4 A 6 TYR A 32 ALA A 37 -1 O ILE A 34 N LEU A 26 SHEET 5 A 6 ALA A 58 ARG A 64 -1 O GLU A 63 N VAL A 33 SHEET 6 A 6 LYS A 103 MET A 104 -1 O MET A 104 N ALA A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1