HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-OCT-11 2LKY TITLE SOLUTION STRUCTURE OF MSMEG_1053, THE SECOND DUF3349 ANNOTATED PROTEIN TITLE 2 IN THE GENOME OF MYCOBACTERIUM SMEGMATIS, SEATTLE STRUCTURAL GENOMICS TITLE 3 CENTER FOR INFECTIOUS DISEASE TARGET MYSMA.17112.B COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084; SOURCE 5 GENE: MSMEG_1063; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: AVA0421 KEYWDS INFECTIOUS DISEASE, TUBERCULOSIS, DUF PROTEINS, SSGCID, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 3 14-JUN-23 2LKY 1 REMARK REVDAT 2 26-FEB-20 2LKY 1 JRNL REMARK SEQADV REVDAT 1 16-NOV-11 2LKY 0 JRNL AUTH G.W.BUCHKO,J.ABENDROTH,J.I.ROBINSON,I.Q.PHAN,P.J.MYLER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL STRUCTURAL DIVERSITY IN THE MYCOBACTERIA DUF3349 JRNL TITL 2 SUPERFAMILY. JRNL REF PROTEIN SCI. V. 29 670 2020 JRNL REFN ESSN 1469-896X JRNL PMID 31658388 JRNL DOI 10.1002/PRO.3758 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CNSSOLVE 2.6, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNSSOLVE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER REMARK 3 (CNSSOLVE) AFTER ADDING 1% TO THE UPPER BOUNDARY LIMIT OF THE REMARK 3 UPPER DISTANCE RESTRAINTS AND THE VDW LIMIT TO THE LOWER REMARK 3 RESTRAINT. PARAM19 WAS USED FOR THE WATER REFINEMENT REMARK 3 CALCULATIONS. STRUCTURES WITH 3 OR MORE CLOSE CONTACTS FOLLOWING REMARK 3 WATER REFINEMENT, AS DETERMINED BY PSVS, WERE REMOVED FROM THE REMARK 3 ENSEMBLE. IN THE END, 17 OUT OF THE 20 CYANA STRUCTURES REFINED REMARK 3 EXPLICITLY WITH WATER WERE INCLUDED IN THE FINAL DEPOSITION. REMARK 4 REMARK 4 2LKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102508. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 100 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 20 MM TRIS, 93% H2O/7% REMARK 210 D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] PROTEIN, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 20 MM TRIS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D HN(COCA)CB; REMARK 210 3D HNCO; 3D C(CO)NH; 2D REMARK 210 HBCBCGCDCDHD; 2D HBCBCGCDCEHE; REMARK 210 DEUTERIUM EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, SPARKY 3.115, PSVS REMARK 210 1.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 5 -75.24 -61.34 REMARK 500 1 ALA A 57 139.19 -174.86 REMARK 500 1 ASP A 63 140.24 -31.69 REMARK 500 1 PRO A 76 -91.71 -69.83 REMARK 500 2 ALA A 57 -90.20 -164.01 REMARK 500 2 HIS A 58 101.53 169.81 REMARK 500 2 ASP A 63 121.53 -32.50 REMARK 500 2 PRO A 76 -99.57 -67.08 REMARK 500 2 PRO A 98 -174.72 -61.18 REMARK 500 3 SER A 4 -87.20 -113.15 REMARK 500 3 MET A 5 146.63 172.47 REMARK 500 3 ASP A 63 113.74 -34.98 REMARK 500 3 PRO A 76 -93.89 -68.79 REMARK 500 3 PRO A 98 -175.07 -55.45 REMARK 500 3 ASP A 105 42.85 -82.24 REMARK 500 4 ALA A 57 108.81 -166.18 REMARK 500 4 ASP A 63 138.36 60.14 REMARK 500 4 PRO A 76 -87.80 -73.65 REMARK 500 4 SER A 108 54.05 -114.08 REMARK 500 5 ASN A 7 165.16 -49.18 REMARK 500 5 ALA A 57 124.85 -171.59 REMARK 500 5 ASP A 63 124.05 -37.76 REMARK 500 5 PRO A 76 -89.98 -71.30 REMARK 500 6 PRO A 2 80.97 -63.85 REMARK 500 6 ASP A 63 133.88 -31.67 REMARK 500 6 PRO A 76 -96.81 -69.17 REMARK 500 6 PRO A 111 43.45 -80.00 REMARK 500 7 ASN A 7 171.90 -55.74 REMARK 500 7 ASP A 63 129.55 -37.34 REMARK 500 7 PRO A 76 -99.06 -75.32 REMARK 500 7 GLU A 102 98.29 -49.34 REMARK 500 8 PRO A 2 -165.13 -72.89 REMARK 500 8 MET A 5 -157.74 -141.63 REMARK 500 8 ASN A 7 154.56 -41.27 REMARK 500 8 ALA A 57 108.62 -163.96 REMARK 500 8 PRO A 76 -84.96 -62.96 REMARK 500 8 ASP A 105 140.55 -173.96 REMARK 500 8 GLU A 107 10.70 -140.45 REMARK 500 8 SER A 108 32.87 -156.89 REMARK 500 8 PRO A 111 105.95 -41.94 REMARK 500 9 ASN A 7 151.02 -48.50 REMARK 500 9 ASP A 60 -57.56 71.75 REMARK 500 9 PRO A 76 -88.62 -62.37 REMARK 500 9 ASP A 100 106.41 -45.30 REMARK 500 9 PRO A 104 31.73 -72.38 REMARK 500 10 PRO A 2 97.74 -55.33 REMARK 500 10 ALA A 57 -179.38 -177.90 REMARK 500 10 PRO A 76 -99.42 -70.50 REMARK 500 10 GLU A 103 -54.92 -167.11 REMARK 500 10 PRO A 104 -85.09 -83.06 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18016 RELATED DB: BMRB REMARK 900 RELATED ID: MYSMA.17112.B RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE PROTEIN WAS OBTAINED VIA PCR CLONING, REMARK 999 AND M5 AND V6 ARE PART OF THE PROTEIN SEQUENCE. DBREF 2LKY A 7 112 UNP A0QRC1 A0QRC1_MYCS2 2 107 SEQADV 2LKY GLY A 1 UNP A0QRC1 EXPRESSION TAG SEQADV 2LKY PRO A 2 UNP A0QRC1 EXPRESSION TAG SEQADV 2LKY GLY A 3 UNP A0QRC1 EXPRESSION TAG SEQADV 2LKY SER A 4 UNP A0QRC1 EXPRESSION TAG SEQADV 2LKY MET A 5 UNP A0QRC1 SEE REMARK 999 SEQADV 2LKY VAL A 6 UNP A0QRC1 SEE REMARK 999 SEQRES 1 A 112 GLY PRO GLY SER MET VAL ASN ALA PHE LEU ALA LYS ILE SEQRES 2 A 112 ALA ALA TRP LEU ASN ALA GLY TYR PRO GLU GLY VAL PRO SEQRES 3 A 112 GLY PRO ASP ARG VAL PRO LEU LEU ALA LEU LEU THR ARG SEQRES 4 A 112 ARG LEU THR ASN ASP GLU ILE LYS ALA ILE ALA GLU ASP SEQRES 5 A 112 LEU GLU LYS ARG ALA HIS PHE ASP HIS ILE ASP ILE GLY SEQRES 6 A 112 VAL LEU ILE THR GLN MET THR ASP GLU MET PRO ARG GLU SEQRES 7 A 112 GLU ASP ILE GLU ARG VAL ARG ARG HIS LEU ALA LEU GLN SEQRES 8 A 112 GLY TRP PRO LEU ASP ASP PRO ARG ASP GLY GLU GLU PRO SEQRES 9 A 112 ASP GLY GLU SER GLY GLY PRO ARG HELIX 1 1 ASN A 7 TYR A 21 1 15 HELIX 2 2 PRO A 26 THR A 38 1 13 HELIX 3 3 THR A 42 ALA A 57 1 16 HELIX 4 4 ILE A 64 THR A 72 1 9 HELIX 5 5 ARG A 77 LEU A 90 1 14 HELIX 6 6 TRP A 93 ASP A 97 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1