HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-OCT-11 2LL0 TITLE NMR STRUCTURE OF THE PUTATIVE ATPASE REGULATORY PROTEIN YP_916642.1 TITLE 2 FROM PARACOCCUS DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 318586; SOURCE 4 STRAIN: PD 1222; SOURCE 5 GENE: PDEN_2862; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PT77 KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 UNKNOWN FUNCTION, PSI-BIOLOGY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,M.GERALT,K.WUTHRICH,E.MORALES-RIOS,M.ZARCO-ZAVALA, AUTHOR 2 J.J.GARCIA-TREJO,S.K.DUTTA,JOINT CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (JCSG) REVDAT 3 14-JUN-23 2LL0 1 REMARK REVDAT 2 12-JUN-13 2LL0 1 AUTHOR JRNL REVDAT 1 28-DEC-11 2LL0 0 JRNL AUTH P.SERRANO,M.GERALT,K.WUTHRICH,S.K.DUTTA,E.MORALES-RIOS, JRNL AUTH 2 J.J.GARCIA-TREJO,M.ZARCO-ZAVALA JRNL TITL NMR STRUCTURE OF THE PUTATIVE ATPASE REGULATORY PROTEIN JRNL TITL 2 YP_916642.1 FROM PARACOCCUS DENITRIFICANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102510. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.083 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 5D APSY REMARK 210 CBCACONH; 4D APSY HACANH; 5D REMARK 210 APSY HACACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO, TOPSPIN, CARA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -174.86 -69.06 REMARK 500 1 THR A 3 -169.19 -65.90 REMARK 500 1 ASP A 6 -166.08 69.30 REMARK 500 1 GLU A 8 -84.90 -73.37 REMARK 500 1 HIS A 11 -64.56 -138.12 REMARK 500 1 ASP A 18 -154.26 54.55 REMARK 500 1 ALA A 19 -73.67 65.84 REMARK 500 1 ARG A 28 -52.94 -122.50 REMARK 500 1 LEU A 53 56.51 -117.53 REMARK 500 1 THR A 54 -64.88 -148.15 REMARK 500 1 VAL A 55 0.27 -58.70 REMARK 500 1 THR A 57 -61.55 53.63 REMARK 500 1 SER A 58 -172.64 52.22 REMARK 500 1 ASP A 65 -83.31 45.05 REMARK 500 1 ALA A 80 105.54 -161.77 REMARK 500 2 THR A 3 -171.86 57.21 REMARK 500 2 GLU A 8 106.00 66.43 REMARK 500 2 ALA A 10 -65.67 -128.25 REMARK 500 2 GLU A 12 -31.98 52.69 REMARK 500 2 HIS A 17 -5.84 -59.25 REMARK 500 2 ASP A 18 -154.83 69.67 REMARK 500 2 ALA A 19 -79.17 60.29 REMARK 500 2 PRO A 63 97.20 -67.02 REMARK 500 2 ASP A 67 -38.12 -130.97 REMARK 500 2 LEU A 76 32.81 -82.05 REMARK 500 2 THR A 84 -54.99 -120.38 REMARK 500 2 ALA A 96 12.80 -69.61 REMARK 500 3 GLU A 8 96.59 65.75 REMARK 500 3 ARG A 9 8.34 59.95 REMARK 500 3 HIS A 17 18.96 -69.99 REMARK 500 3 ASP A 18 -155.15 55.36 REMARK 500 3 ALA A 19 -69.77 57.55 REMARK 500 3 ASN A 22 26.01 -72.33 REMARK 500 3 LYS A 24 -61.81 -123.55 REMARK 500 3 VAL A 56 45.72 -85.97 REMARK 500 3 THR A 57 -38.78 -168.45 REMARK 500 3 PHE A 60 -31.16 -138.34 REMARK 500 3 ALA A 74 11.05 -68.77 REMARK 500 3 ASP A 75 -57.34 -134.79 REMARK 500 3 LEU A 76 20.69 -76.54 REMARK 500 3 GLU A 77 107.67 -54.88 REMARK 500 3 THR A 84 -41.87 -133.49 REMARK 500 4 THR A 3 -22.24 66.95 REMARK 500 4 GLU A 8 -85.26 -82.66 REMARK 500 4 ASP A 18 -169.39 70.16 REMARK 500 4 ALA A 19 -78.07 61.45 REMARK 500 4 ALA A 27 10.56 -69.04 REMARK 500 4 THR A 57 -75.90 51.92 REMARK 500 4 SER A 58 -75.31 56.86 REMARK 500 4 ASP A 59 91.04 61.46 REMARK 500 REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 THR A 2 1 139.93 REMARK 500 ASP A 18 ALA A 19 12 148.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 9 0.12 SIDE CHAIN REMARK 500 2 ARG A 86 0.09 SIDE CHAIN REMARK 500 3 TYR A 51 0.08 SIDE CHAIN REMARK 500 4 ARG A 9 0.10 SIDE CHAIN REMARK 500 4 TYR A 51 0.07 SIDE CHAIN REMARK 500 5 TYR A 51 0.08 SIDE CHAIN REMARK 500 6 TYR A 51 0.11 SIDE CHAIN REMARK 500 7 ARG A 70 0.12 SIDE CHAIN REMARK 500 8 ARG A 9 0.14 SIDE CHAIN REMARK 500 8 TYR A 51 0.08 SIDE CHAIN REMARK 500 9 ARG A 9 0.15 SIDE CHAIN REMARK 500 9 ARG A 29 0.08 SIDE CHAIN REMARK 500 10 TYR A 51 0.10 SIDE CHAIN REMARK 500 11 ARG A 31 0.10 SIDE CHAIN REMARK 500 11 ARG A 70 0.11 SIDE CHAIN REMARK 500 12 ARG A 9 0.10 SIDE CHAIN REMARK 500 13 ARG A 31 0.08 SIDE CHAIN REMARK 500 14 ARG A 28 0.10 SIDE CHAIN REMARK 500 14 TYR A 51 0.08 SIDE CHAIN REMARK 500 14 ARG A 86 0.11 SIDE CHAIN REMARK 500 15 ARG A 7 0.10 SIDE CHAIN REMARK 500 15 TYR A 51 0.10 SIDE CHAIN REMARK 500 16 ARG A 29 0.12 SIDE CHAIN REMARK 500 16 TYR A 51 0.07 SIDE CHAIN REMARK 500 16 ARG A 86 0.08 SIDE CHAIN REMARK 500 17 ARG A 29 0.11 SIDE CHAIN REMARK 500 18 ARG A 31 0.13 SIDE CHAIN REMARK 500 18 TYR A 51 0.09 SIDE CHAIN REMARK 500 19 TYR A 51 0.08 SIDE CHAIN REMARK 500 20 ARG A 31 0.13 SIDE CHAIN REMARK 500 20 TYR A 51 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18018 RELATED DB: BMRB REMARK 900 RELATED ID: 424052 RELATED DB: TARGETDB DBREF 2LL0 A 1 104 UNP A1B602 A1B602_PARDP 1 104 SEQRES 1 A 104 MET THR THR PHE ASP ASP ARG GLU ARG ALA HIS GLU ALA SEQRES 2 A 104 LYS PHE ALA HIS ASP ALA GLU LEU ASN PHE LYS ALA GLU SEQRES 3 A 104 ALA ARG ARG ASN ARG LEU LEU GLY GLU TRP ALA ALA GLY SEQRES 4 A 104 LEU LEU GLY LYS THR GLY ASP ASP ALA ARG ALA TYR ALA SEQRES 5 A 104 LEU THR VAL VAL THR SER ASP PHE ASP GLU PRO GLY ASP SEQRES 6 A 104 GLU ASP VAL PHE ARG LYS LEU ALA ALA ASP LEU GLU GLY SEQRES 7 A 104 LYS ALA ASP GLU GLU THR ILE ARG ALA LYS MET VAL GLU SEQRES 8 A 104 LEU ARG ALA THR ALA ARG GLU GLN ILE ILE SER GLU ILE HELIX 1 1 ALA A 19 GLY A 42 1 24 HELIX 2 2 ASP A 46 LEU A 53 1 8 HELIX 3 3 GLU A 66 GLU A 77 1 12 HELIX 4 4 ASP A 81 LEU A 92 1 12 HELIX 5 5 LEU A 92 GLU A 103 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1