HEADER CELL ADHESION 26-OCT-11 2LL4 TITLE HADDOCK STRUCTURE OF TGMIC4-A5/LACTO-N-BIOSE COMPLEX, BASED ON NOE- TITLE 2 DERIVED DISTANCE RESTRAINTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEMAL PROTEIN 4; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: APPLE-5 DOMAIN RESIDUES 410-491; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: MIC4, TGIB.0680; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-32 XA/LIC KEYWDS CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.COWPER,S.MATTHEWS REVDAT 4 16-OCT-24 2LL4 1 HETSYN REVDAT 3 29-JUL-20 2LL4 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 30-MAY-12 2LL4 1 JRNL REVDAT 1 04-APR-12 2LL4 0 JRNL AUTH J.MARCHANT,B.COWPER,Y.LIU,L.LAI,C.PINZAN,J.B.MARQ, JRNL AUTH 2 N.FRIEDRICH,K.SAWMYNADEN,L.LIEW,W.CHAI,R.A.CHILDS,S.SAOUROS, JRNL AUTH 3 P.SIMPSON,M.C.ROQUE BARREIRA,T.FEIZI,D.SOLDATI-FAVRE, JRNL AUTH 4 S.MATTHEWS JRNL TITL GALACTOSE RECOGNITION BY THE APICOMPLEXAN PARASITE JRNL TITL 2 TOXOPLASMA GONDII. JRNL REF J.BIOL.CHEM. V. 287 16720 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22399295 JRNL DOI 10.1074/JBC.M111.325928 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, ARIA 2.1, CNS REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.7 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 UM [U-98% 13C; U-98% 15N] REMARK 210 TGMIC4-A5, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 500 UM LACTO-N-BIOSE, REMARK 210 90% H2O/10% D2O; 10 MM LACTO-N- REMARK 210 BIOSE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC AROMATIC; 2D 1H REMARK 210 -1H TOCSY; 2D DQF-COSY; 2D 1H-1H REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 SER M 1 REMARK 465 PRO M 2 REMARK 465 ASP M 3 REMARK 465 PHE M 4 REMARK 465 HIS M 5 REMARK 465 ASP M 6 REMARK 465 GLU M 7 REMARK 465 VAL M 8 REMARK 465 GLU M 9 REMARK 465 ASP M 80 REMARK 465 THR M 81 REMARK 465 SER M 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS M 12 -72.54 -152.37 REMARK 500 1 SER M 76 37.77 -75.54 REMARK 500 1 ARG M 77 -67.85 68.50 REMARK 500 1 THR M 78 -153.52 -89.46 REMARK 500 2 THR M 13 -140.66 58.26 REMARK 500 2 SER M 76 -79.55 -69.94 REMARK 500 2 ARG M 77 -38.53 -174.14 REMARK 500 3 THR M 13 -114.75 62.38 REMARK 500 3 HIS M 47 125.57 -170.03 REMARK 500 3 ARG M 61 -161.19 -127.16 REMARK 500 3 SER M 76 -77.59 -64.85 REMARK 500 3 ARG M 77 -41.01 -178.44 REMARK 500 4 THR M 13 -151.53 58.10 REMARK 500 4 LYS M 19 45.92 -86.77 REMARK 500 4 GLN M 65 72.36 -116.36 REMARK 500 4 SER M 76 -75.30 -67.77 REMARK 500 4 ARG M 77 -33.04 -173.21 REMARK 500 5 HIS M 12 -71.66 -95.58 REMARK 500 5 THR M 13 -130.07 61.83 REMARK 500 5 HIS M 47 139.71 -177.35 REMARK 500 6 THR M 13 -145.33 57.04 REMARK 500 6 HIS M 47 133.16 -178.04 REMARK 500 6 ARG M 61 -166.68 -120.69 REMARK 500 6 SER M 76 -83.06 -71.73 REMARK 500 6 ARG M 77 -33.24 -168.22 REMARK 500 7 HIS M 12 -72.71 -75.36 REMARK 500 7 THR M 13 -129.54 59.43 REMARK 500 7 SER M 54 -36.18 -169.82 REMARK 500 7 ARG M 61 -165.71 -129.08 REMARK 500 8 HIS M 12 141.55 -172.93 REMARK 500 8 THR M 13 -152.04 61.30 REMARK 500 8 ASN M 15 58.43 39.21 REMARK 500 8 HIS M 47 143.57 -173.75 REMARK 500 8 LEU M 70 99.58 -68.52 REMARK 500 8 SER M 76 -73.33 -67.95 REMARK 500 8 ARG M 77 -35.59 -176.21 REMARK 500 9 HIS M 12 -80.66 -84.97 REMARK 500 9 THR M 13 -126.89 54.43 REMARK 500 9 SER M 31 -165.40 -170.12 REMARK 500 9 SER M 54 -35.63 -142.81 REMARK 500 10 THR M 13 -160.56 58.88 REMARK 500 10 ASN M 15 57.22 37.04 REMARK 500 10 SER M 76 -80.16 -68.35 REMARK 500 10 ARG M 77 -46.93 -178.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LL3 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF TGMIC4 APPLE-5 IN FREE-STATE REMARK 900 RELATED ID: 17667 RELATED DB: BMRB DBREF 2LL4 M 1 82 UNP Q9XZH7 MIC4_TOXGO 410 491 SEQRES 1 M 82 SER PRO ASP PHE HIS ASP GLU VAL GLU CYS VAL HIS THR SEQRES 2 M 82 GLY ASN ILE GLY SER LYS ALA GLN THR ILE GLY GLU VAL SEQRES 3 M 82 LYS ARG ALA SER SER LEU SER GLU CYS ARG ALA ARG CYS SEQRES 4 M 82 GLN ALA GLU LYS GLU CYS SER HIS TYR THR TYR ASN VAL SEQRES 5 M 82 LYS SER GLY LEU CYS TYR PRO LYS ARG GLY LYS PRO GLN SEQRES 6 M 82 PHE TYR LYS TYR LEU GLY ASP MET THR GLY SER ARG THR SEQRES 7 M 82 CYS ASP THR SER HET NAG A 1 29 HET GAL A 2 22 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 HELIX 1 1 SER M 31 GLU M 42 1 12 SHEET 1 A 2 ILE M 16 SER M 18 0 SHEET 2 A 2 PHE M 66 LYS M 68 -1 O TYR M 67 N GLY M 17 SHEET 1 B 3 LEU M 56 LYS M 60 0 SHEET 2 B 3 HIS M 47 ASN M 51 -1 N ASN M 51 O LEU M 56 SHEET 3 B 3 ASP M 72 GLY M 75 -1 O GLY M 75 N TYR M 48 SSBOND 1 CYS M 10 CYS M 79 1555 1555 2.03 SSBOND 2 CYS M 35 CYS M 57 1555 1555 2.03 SSBOND 3 CYS M 39 CYS M 45 1555 1555 2.03 LINK O3 NAG A 1 C1 GAL A 2 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1