HEADER TRANSFERASE 31-OCT-11 2LL8 TITLE SOLUTION NMR STRUCTURE OF THE SPECIALIZED HOLO-ACYL CARRIER PROTEIN TITLE 2 RPA2022 FROM RHODOPSEUDOMONAS PALUSTRIS REFINED WITH NH RDCS, TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RPR324 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECIALIZED ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA2022; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21-NESG KEYWDS HOLO, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,S.NI,P.ROSSI,Y.YANG,H.WANG,C.CICCOSANTI,M.MAGLAQUI, AUTHOR 2 H.JANJUA,R.NAIR,B.ROSET,T.B.ACTON,R.XIAO,J.K.EVERETT,J.H.PRESTEGARD, AUTHOR 3 G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 4 14-JUN-23 2LL8 1 REMARK SEQADV LINK REVDAT 3 05-DEC-12 2LL8 1 JRNL REVDAT 2 22-FEB-12 2LL8 1 KEYWDS REVDAT 1 30-NOV-11 2LL8 0 JRNL AUTH T.A.RAMELOT,P.ROSSI,F.FOROUHAR,H.W.LEE,Y.YANG,S.NI,S.UNSER, JRNL AUTH 2 S.LEW,J.SEETHARAMAN,R.XIAO,T.B.ACTON,J.K.EVERETT, JRNL AUTH 3 J.H.PRESTEGARD,J.F.HUNT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL STRUCTURE OF A SPECIALIZED ACYL CARRIER PROTEIN ESSENTIAL JRNL TITL 2 FOR LIPID A BIOSYNTHESIS WITH VERY LONG-CHAIN FATTY ACIDS IN JRNL TITL 3 OPEN AND CLOSED CONFORMATIONS. JRNL REF BIOCHEMISTRY V. 51 7239 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22876860 JRNL DOI 10.1021/BI300546B REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.3, PSVS 1.4, FMCGUI REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS), REMARK 3 ALEX LEMAK, UNIVERSITY OF TORONTO (FMCGUI) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS WATER REFINEMENT + RDCS REMARK 4 REMARK 4 2LL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102518. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 10 MM DTT, 90% H2O/10% D2O; 1.0 REMARK 210 MM U-100% 15N AND 5% 13C REMARK 210 BIOSYNTHETICALLY DIRECTED REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 10 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC-CT; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY_ REMARK 210 ALIPH; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-13C NOESY_AROM; REMARK 210 3D HN(CO)CA; 3D HBHA(CO)NH; 3D REMARK 210 C(CCO)NH; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 4D CC-NOESY; REMARK 210 2D 1H-15N HETNOE; 2D 1H-15N REMARK 210 HSQC_HIS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.25, SPARKY 3.113, AUTOASSIGN REMARK 210 2.30, PDBSTAT 5.4, PINE SERVER REMARK 210 1.0, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 53 -169.52 -112.86 REMARK 500 1 LEU A 94 -167.22 48.10 REMARK 500 1 HIS A 97 165.73 68.28 REMARK 500 1 HIS A 98 -80.29 -72.39 REMARK 500 2 HIS A 96 98.47 -64.84 REMARK 500 2 HIS A 100 -45.77 77.89 REMARK 500 3 THR A 2 82.11 47.76 REMARK 500 3 ASP A 17 73.03 49.70 REMARK 500 3 ASP A 32 -61.59 -103.35 REMARK 500 3 PRO A 56 61.91 -66.97 REMARK 500 3 LEU A 94 -166.07 59.44 REMARK 500 3 HIS A 96 78.78 54.42 REMARK 500 3 HIS A 97 -78.95 -107.27 REMARK 500 3 HIS A 99 -157.52 62.44 REMARK 500 3 HIS A 100 -162.75 64.25 REMARK 500 4 ILE A 53 -165.53 -127.39 REMARK 500 4 ALA A 93 1.18 160.14 REMARK 500 4 HIS A 96 116.63 64.64 REMARK 500 4 HIS A 100 93.36 -66.22 REMARK 500 5 HIS A 98 -55.55 -126.05 REMARK 500 5 HIS A 99 74.55 54.23 REMARK 500 5 HIS A 100 108.23 -54.08 REMARK 500 6 ASP A 32 -66.72 -105.24 REMARK 500 6 HIS A 96 -76.31 66.48 REMARK 500 6 HIS A 97 -34.34 77.00 REMARK 500 6 HIS A 98 101.66 69.77 REMARK 500 7 THR A 2 117.34 -160.47 REMARK 500 7 SER A 3 172.39 178.54 REMARK 500 7 ALA A 93 123.19 174.62 REMARK 500 7 HIS A 96 12.12 -177.20 REMARK 500 7 HIS A 97 162.88 76.46 REMARK 500 7 HIS A 98 -32.14 90.32 REMARK 500 7 HIS A 99 108.10 72.79 REMARK 500 8 HIS A 96 19.37 59.92 REMARK 500 8 HIS A 100 -63.15 -166.39 REMARK 500 9 ASP A 32 -62.33 -120.32 REMARK 500 9 LEU A 94 -167.82 57.05 REMARK 500 9 HIS A 98 -70.40 -81.95 REMARK 500 9 HIS A 99 -54.67 73.49 REMARK 500 10 THR A 2 98.57 -66.59 REMARK 500 10 ASP A 17 70.96 49.41 REMARK 500 10 ASP A 32 -61.98 -98.42 REMARK 500 10 PHE A 75 16.95 -140.24 REMARK 500 10 HIS A 100 -39.66 -168.12 REMARK 500 11 ASP A 32 -63.74 -90.14 REMARK 500 11 LEU A 94 130.62 80.30 REMARK 500 11 HIS A 97 -74.59 65.48 REMARK 500 11 HIS A 100 96.92 66.23 REMARK 500 12 ASP A 31 44.96 -109.33 REMARK 500 12 ASP A 32 -65.64 -169.15 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNS A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18032 RELATED DB: BMRB REMARK 900 RELATED ID: RPR324 RELATED DB: TARGETDB DBREF 2LL8 A 1 93 UNP Q6N882 Q6N882_RHOPA 1 93 SEQADV 2LL8 LEU A 94 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 GLU A 95 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 96 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 97 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 98 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 99 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 100 UNP Q6N882 EXPRESSION TAG SEQADV 2LL8 HIS A 101 UNP Q6N882 EXPRESSION TAG SEQRES 1 A 101 MET THR SER THR PHE ASP ARG VAL ALA THR ILE ILE ALA SEQRES 2 A 101 GLU THR CYS ASP ILE PRO ARG GLU THR ILE THR PRO GLU SEQRES 3 A 101 SER HIS ALA ILE ASP ASP LEU GLY ILE ASP SER LEU ASP SEQRES 4 A 101 PHE LEU ASP ILE ALA PHE ALA ILE ASP LYS ALA PHE GLY SEQRES 5 A 101 ILE LYS LEU PRO LEU GLU LYS TRP THR GLN GLU VAL ASN SEQRES 6 A 101 ASP GLY LYS ALA THR THR GLU GLN TYR PHE VAL LEU LYS SEQRES 7 A 101 ASN LEU ALA ALA ARG ILE ASP GLU LEU VAL ALA ALA LYS SEQRES 8 A 101 GLY ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PNS A 102 42 HETNAM PNS 4'-PHOSPHOPANTETHEINE FORMUL 2 PNS C11 H23 N2 O7 P S HELIX 1 1 SER A 3 ASP A 17 1 15 HELIX 2 2 PRO A 19 ILE A 23 5 5 HELIX 3 3 ASP A 36 GLY A 52 1 17 HELIX 4 4 PRO A 56 ASP A 66 1 11 HELIX 5 5 THR A 71 VAL A 76 1 6 HELIX 6 6 VAL A 76 GLY A 92 1 17 LINK OG SER A 37 P24 PNS A 102 1555 1555 1.60 SITE 1 AC1 2 ASP A 36 SER A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1