HEADER TRANSPORT PROTEIN 05-NOV-11 2LLA TITLE NMR SOLUTION STRUCTURE ENSEMBLE OF DOMAIN 11 OF THE ECHIDNA M6P/IGF2R TITLE 2 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-6-PHOSPHATE/INSULIN-LIKE GROWTH FACTOR II RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 11 RESIDUES 1490-1628; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TACHYGLOSSUS ACULEATUS; SOURCE 3 ORGANISM_COMMON: SHORT-BEAKED ECHIDNA; SOURCE 4 ORGANISM_TAXID: 9261; SOURCE 5 GENE: IGF2R, M6P/IGF2R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET26 KEYWDS MONOTREME, MANNOSE-6-PHOSPHATE, IGF-II, DOMAIN 11, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.STRICKLAND,M.P.CRUMP,C.WILLIAMS,D.REZGUI,R.Z.ELLIS,H.HOPPE,S.FRAGO, AUTHOR 2 S.N.PRINCE,O.J.ZACCHEO,B.E.FORBES,E.JONES,A.Z.HASSAN,P.WATTANA-AMORN REVDAT 2 12-DEC-12 2LLA 1 JRNL REVDAT 1 07-NOV-12 2LLA 0 JRNL AUTH C.WILLIAMS,H.J.HOPPE,D.REZGUI,M.STRICKLAND,B.E.FORBES, JRNL AUTH 2 F.GRUTZNER,S.FRAGO,R.Z.ELLIS,P.WATTANA-AMORN,S.N.PRINCE, JRNL AUTH 3 O.J.ZACCHEO,C.M.NOLAN,A.J.MUNGALL,E.Y.JONES,M.P.CRUMP, JRNL AUTH 4 A.B.HASSAN JRNL TITL AN EXON SPLICE ENHANCER PRIMES IGF2:IGF2R BINDING SITE JRNL TITL 2 STRUCTURE AND FUNCTION EVOLUTION. JRNL REF SCIENCE V. 338 1209 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 23197533 JRNL DOI 10.1126/SCIENCE.1228633 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, PROCHECKNMR, ANALYSIS 2.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LASKOWSKI AND REMARK 3 MACARTHUR (PROCHECKNMR), CCPN (ANALYSIS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD WATER REFINEMENT REMARK 4 REMARK 4 2LLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB102520. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 5.50 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 UM SODIUM AZIDE, 10 MM REMARK 210 SODIUM PHOSPHATE, 1 MM EDTA, 7 % REMARK 210 D2O, 93 % H2O, 0.5 MM [U-95% 13C; REMARK 210 U-95% 15N] M6P/IGF2_RECEPTOR, 93% REMARK 210 H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 3D H(CCO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, TALOS, PINE, REMARK 210 VNMRJ 2.2C, ANALYSIS 2.1, CS23D REMARK 210 1.0 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENER REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 RESTRAINTS, DIHEDRAL RESTRAINTS PREDICTED FROM TALOS AND HYDROGEN REMARK 210 BOND RESTRAINTS INITIALLY PREDICTED FROM THE HOMOLOGOUS HUMAN REMARK 210 DOMAIN 11 IGF2R STRUCTURE (2CNJ) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A1510 -69.60 -99.66 REMARK 500 1 LYS A1511 146.44 61.55 REMARK 500 1 LYS A1523 -73.93 -113.97 REMARK 500 1 THR A1548 -34.77 74.95 REMARK 500 1 ASP A1563 101.90 -49.63 REMARK 500 1 LEU A1580 -53.02 69.45 REMARK 500 2 GLN A1491 81.13 55.22 REMARK 500 2 LYS A1523 90.19 79.14 REMARK 500 2 ASP A1572 73.26 53.97 REMARK 500 2 PRO A1577 2.54 -68.10 REMARK 500 2 LEU A1580 -47.12 68.45 REMARK 500 2 ALA A1596 -64.38 -128.09 REMARK 500 2 THR A1599 73.22 -102.49 REMARK 500 3 ASP A1563 83.89 40.45 REMARK 500 3 LEU A1580 -47.82 71.47 REMARK 500 3 ALA A1596 -56.44 -143.54 REMARK 500 3 THR A1599 53.97 -92.31 REMARK 500 3 SER A1606 146.98 -179.90 REMARK 500 3 GLU A1625 99.08 -63.59 REMARK 500 4 GLN A1491 88.69 -153.58 REMARK 500 4 LYS A1523 74.44 73.73 REMARK 500 4 ASP A1563 100.79 -51.28 REMARK 500 4 ASP A1572 92.54 61.91 REMARK 500 4 LEU A1580 -62.54 67.86 REMARK 500 4 SER A1600 145.77 69.34 REMARK 500 4 SER A1606 142.67 -178.35 REMARK 500 5 ASP A1492 79.48 51.70 REMARK 500 5 LYS A1523 87.18 73.52 REMARK 500 5 ASP A1572 71.00 68.94 REMARK 500 5 LEU A1580 -53.11 67.98 REMARK 500 5 SER A1600 108.87 65.54 REMARK 500 6 ASP A1572 80.15 66.80 REMARK 500 6 LEU A1580 -50.96 68.95 REMARK 500 6 HIS A1581 26.24 -79.86 REMARK 500 6 SER A1600 177.14 66.12 REMARK 500 6 GLU A1625 151.69 -44.12 REMARK 500 7 LYS A1523 83.56 71.22 REMARK 500 7 GLN A1557 44.09 -105.97 REMARK 500 7 ASP A1572 71.96 56.94 REMARK 500 7 LEU A1580 -48.68 70.42 REMARK 500 7 ALA A1596 -63.30 -97.10 REMARK 500 7 LEU A1605 -63.36 -98.15 REMARK 500 8 GLN A1491 129.08 72.12 REMARK 500 8 LYS A1523 -59.30 -125.83 REMARK 500 8 ASP A1563 88.23 34.05 REMARK 500 8 ASP A1572 83.19 60.20 REMARK 500 8 PRO A1577 16.13 -69.43 REMARK 500 8 LEU A1580 -47.10 68.93 REMARK 500 8 THR A1599 58.55 -96.81 REMARK 500 9 ASN A1493 -74.18 -129.34 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A1522 0.09 SIDE CHAIN REMARK 500 10 ARG A1512 0.07 SIDE CHAIN REMARK 500 19 ARG A1522 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CNJ RELATED DB: PDB REMARK 900 NMR STUDIES ON THE INTERACTION OF INSULIN-GROWTH FACTOR II REMARK 900 (IGF-II) WITH IGF2R DOMAIN 11 REMARK 900 RELATED ID: 7131 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF IGF2R DOMAIN 11 REMARK 900 RELATED ID: 17287 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE ENSEMBLE OF DOMAIN 11 OF THE ECHIDNA REMARK 900 M6P/IGF2R RECEPTOR DBREF 2LLA A 1490 1628 UNP Q95LC7 Q95LC7_9MAMM 1490 1628 SEQADV 2LLA MET A 1489 UNP Q95LC7 EXPRESSION TAG SEQADV 2LLA VAL A 1607 UNP Q95LC7 MET 1607 CONFLICT SEQRES 1 A 140 MET VAL GLN ASP ASN CYS GLN VAL THR ASN PRO ALA THR SEQRES 2 A 140 GLY TYR VAL PHE ASP LEU ASN SER LEU LYS ARG GLU SER SEQRES 3 A 140 GLY TYR THR ILE SER ASP ILE ARG LYS GLY SER ILE ARG SEQRES 4 A 140 LEU GLY VAL CYS GLY GLU VAL LYS ASP CYS GLY PRO GLY SEQRES 5 A 140 ILE GLY ALA CYS PHE GLU GLY THR GLY ILE LYS ALA GLY SEQRES 6 A 140 LYS TRP ASN GLN LYS LEU SER TYR VAL ASP GLN VAL LEU SEQRES 7 A 140 GLN LEU VAL TYR GLU ASP GLY ASP PRO CYS PRO ALA ASN SEQRES 8 A 140 LEU HIS LEU LYS TYR LYS SER VAL ILE SER PHE VAL CYS SEQRES 9 A 140 LYS SER ASP ALA GLY PRO THR SER GLN PRO LEU LEU LEU SEQRES 10 A 140 SER VAL ASP GLU HIS THR CYS THR LEU PHE PHE SER TRP SEQRES 11 A 140 HIS THR SER LEU ALA CYS GLU GLN GLU VAL HELIX 1 1 ASN A 1508 LEU A 1510 5 3 HELIX 2 2 VAL A 1534 GLY A 1538 5 5 HELIX 3 3 SER A 1621 CYS A 1624 5 4 SHEET 1 A 2 GLN A1495 THR A1497 0 SHEET 2 A 2 VAL A1504 ASP A1506 -1 O PHE A1505 N VAL A1496 SHEET 1 B 4 TYR A1516 SER A1519 0 SHEET 2 B 4 SER A1525 LEU A1528 -1 O LEU A1528 N TYR A1516 SHEET 3 B 4 ILE A1541 PHE A1545 -1 O CYS A1544 N ARG A1527 SHEET 4 B 4 ILE A1550 LYS A1554 -1 O ILE A1550 N PHE A1545 SHEET 1 C 5 LEU A1559 VAL A1562 0 SHEET 2 C 5 VAL A1565 TYR A1570 -1 O GLN A1567 N SER A1560 SHEET 3 C 5 LYS A1585 CYS A1592 -1 O SER A1586 N TYR A1570 SHEET 4 C 5 THR A1613 THR A1620 1 O PHE A1616 N SER A1589 SHEET 5 C 5 GLN A1601 VAL A1607 -1 N GLN A1601 O HIS A1619 SSBOND 1 CYS A 1494 CYS A 1531 1555 1555 2.01 SSBOND 2 CYS A 1537 CYS A 1544 1555 1555 2.02 SSBOND 3 CYS A 1576 CYS A 1612 1555 1555 2.01 SSBOND 4 CYS A 1592 CYS A 1624 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1