HEADER LYASE 07-NOV-11 2LLE TITLE COMPUTATIONAL DESIGN OF AN EIGHT-STRANDED (BETA/ALPHA)-BARREL FROM TITLE 2 FRAGMENTS OF DIFFERENT FOLDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN CHEY, IMIDAZOLE GLYCEROL PHOSPHATE COMPND 3 SYNTHASE SUBUNIT HISF CHIMERA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IGP SYNTHASE CYCLASE SUBUNIT, IGP SYNTHASE SUBUNIT HISF, COMPND 6 IMGP SYNTHASE SUBUNIT HISF, IGPS SUBUNIT HISF; COMPND 7 EC: 4.1.3.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: CHEY, TM_0700, HISF, TM_1036; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET 21A KEYWDS (BETA/ALPHA)8-BARREL, TIM-BARREL, CHIMERIC PROTEIN, COMPUTATIONALLY KEYWDS 2 DESIGNED PROTEIN, LYASE EXPDTA SOLUTION NMR NUMMDL 17 MDLTYP MINIMIZED AVERAGE AUTHOR M.COLES,V.TRUFFAULT,S.EISENBEIS,W.PROFFITT,J.MEILER,B.HOCKER REVDAT 2 01-MAY-24 2LLE 1 REMARK SEQADV REVDAT 1 21-MAR-12 2LLE 0 JRNL AUTH S.EISENBEIS,W.PROFFITT,M.COLES,V.TRUFFAULT,S.SHANMUGARATNAM, JRNL AUTH 2 J.MEILER,B.HOCKER JRNL TITL POTENTIAL OF FRAGMENT RECOMBINATION FOR RATIONAL DESIGN OF JRNL TITL 2 PROTEINS. JRNL REF J.AM.CHEM.SOC. V. 134 4019 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 22329686 JRNL DOI 10.1021/JA211657K REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH 2.21 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NON-BONDED FUNCTION INCLUDING REMARK 3 RAMACHANDRAN DATABASE POTENTIAL REMARK 4 REMARK 4 2LLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102524. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 350 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] CHEYHISF REMARK 210 -SFR_RM, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 300 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 CHEYHISF-SFR_RM, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 300 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D CCH-TOCSY; 3D CCH- REMARK 210 COSY; 2D PLUSH-TACSY; 3D HNHA; REMARK 210 3D HNHB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D CNH-NOESY; 3D CCH- REMARK 210 NOESY; 3D NNH-NOESY; 2D 15N- REMARK 210 FILTERED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH 2.21 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 21 CG TYR A 21 CD2 0.082 REMARK 500 1 TYR A 21 CG TYR A 21 CD1 0.081 REMARK 500 1 TYR A 21 CE1 TYR A 21 CZ 0.088 REMARK 500 1 TYR A 21 CZ TYR A 21 CE2 0.089 REMARK 500 1 TYR A 122 CG TYR A 122 CD2 0.082 REMARK 500 1 TYR A 122 CG TYR A 122 CD1 0.081 REMARK 500 1 TYR A 122 CE1 TYR A 122 CZ 0.088 REMARK 500 1 TYR A 122 CZ TYR A 122 CE2 0.089 REMARK 500 1 TYR A 161 CG TYR A 161 CD2 0.081 REMARK 500 1 TYR A 161 CG TYR A 161 CD1 0.084 REMARK 500 1 TYR A 161 CE1 TYR A 161 CZ 0.088 REMARK 500 1 TYR A 161 CZ TYR A 161 CE2 0.087 REMARK 500 1 TYR A 219 CG TYR A 219 CD2 0.083 REMARK 500 1 TYR A 219 CG TYR A 219 CD1 0.082 REMARK 500 1 TYR A 219 CE1 TYR A 219 CZ 0.089 REMARK 500 1 TYR A 219 CZ TYR A 219 CE2 0.089 REMARK 500 2 TYR A 21 CG TYR A 21 CD2 0.081 REMARK 500 2 TYR A 21 CG TYR A 21 CD1 0.081 REMARK 500 2 TYR A 21 CE1 TYR A 21 CZ 0.088 REMARK 500 2 TYR A 21 CZ TYR A 21 CE2 0.089 REMARK 500 2 TYR A 122 CG TYR A 122 CD2 0.082 REMARK 500 2 TYR A 122 CG TYR A 122 CD1 0.081 REMARK 500 2 TYR A 122 CE1 TYR A 122 CZ 0.089 REMARK 500 2 TYR A 122 CZ TYR A 122 CE2 0.088 REMARK 500 2 TYR A 161 CG TYR A 161 CD2 0.081 REMARK 500 2 TYR A 161 CG TYR A 161 CD1 0.085 REMARK 500 2 TYR A 161 CE1 TYR A 161 CZ 0.089 REMARK 500 2 TYR A 161 CZ TYR A 161 CE2 0.088 REMARK 500 2 TYR A 219 CG TYR A 219 CD2 0.082 REMARK 500 2 TYR A 219 CG TYR A 219 CD1 0.082 REMARK 500 2 TYR A 219 CE1 TYR A 219 CZ 0.089 REMARK 500 2 TYR A 219 CZ TYR A 219 CE2 0.089 REMARK 500 3 TYR A 21 CG TYR A 21 CD2 0.082 REMARK 500 3 TYR A 21 CG TYR A 21 CD1 0.080 REMARK 500 3 TYR A 21 CE1 TYR A 21 CZ 0.087 REMARK 500 3 TYR A 21 CZ TYR A 21 CE2 0.088 REMARK 500 3 TYR A 122 CG TYR A 122 CD2 0.081 REMARK 500 3 TYR A 122 CG TYR A 122 CD1 0.083 REMARK 500 3 TYR A 122 CE1 TYR A 122 CZ 0.089 REMARK 500 3 TYR A 122 CZ TYR A 122 CE2 0.089 REMARK 500 3 TYR A 161 CG TYR A 161 CD2 0.082 REMARK 500 3 TYR A 161 CG TYR A 161 CD1 0.084 REMARK 500 3 TYR A 161 CE1 TYR A 161 CZ 0.088 REMARK 500 3 TYR A 161 CZ TYR A 161 CE2 0.088 REMARK 500 3 PHE A 193 CG PHE A 193 CD1 0.091 REMARK 500 3 TYR A 219 CG TYR A 219 CD2 0.084 REMARK 500 3 TYR A 219 CG TYR A 219 CD1 0.082 REMARK 500 3 TYR A 219 CE1 TYR A 219 CZ 0.089 REMARK 500 3 TYR A 219 CZ TYR A 219 CE2 0.089 REMARK 500 4 TYR A 21 CG TYR A 21 CD2 0.082 REMARK 500 REMARK 500 THIS ENTRY HAS 274 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 82 -93.17 -137.93 REMARK 500 1 GLU A 228 91.37 -65.03 REMARK 500 2 ASN A 82 -95.43 -137.89 REMARK 500 2 ASN A 226 -63.89 -159.98 REMARK 500 3 GLN A 64 77.92 -101.42 REMARK 500 3 ASN A 82 -93.74 -138.10 REMARK 500 3 HIS A 233 33.44 -159.11 REMARK 500 4 ASN A 82 -95.94 -138.05 REMARK 500 4 HIS A 230 -55.33 -158.16 REMARK 500 5 ASN A 82 -93.73 -137.91 REMARK 500 5 ALA A 203 -50.05 -124.96 REMARK 500 6 GLN A 64 77.96 -101.46 REMARK 500 6 ASN A 82 -93.13 -138.33 REMARK 500 6 ASN A 226 -51.25 -158.56 REMARK 500 6 HIS A 230 -65.19 -139.87 REMARK 500 7 GLN A 64 77.89 -101.64 REMARK 500 7 ASN A 82 -95.97 -137.28 REMARK 500 7 HIS A 231 -63.03 -135.94 REMARK 500 8 ASN A 82 -95.31 -137.36 REMARK 500 9 GLN A 64 77.84 -101.78 REMARK 500 9 ASN A 82 -93.53 -138.70 REMARK 500 9 HIS A 230 90.50 -160.06 REMARK 500 9 HIS A 232 -59.35 -158.10 REMARK 500 10 ASN A 82 -93.16 -138.74 REMARK 500 10 HIS A 229 -62.29 -160.00 REMARK 500 11 ASN A 82 -93.89 -137.86 REMARK 500 11 ASN A 226 -63.91 -136.76 REMARK 500 11 HIS A 229 -54.02 -158.33 REMARK 500 11 HIS A 231 112.11 -160.08 REMARK 500 12 GLN A 64 78.00 -105.59 REMARK 500 12 ASN A 82 -92.57 -139.24 REMARK 500 12 HIS A 232 88.73 -160.06 REMARK 500 13 GLN A 64 77.86 -102.90 REMARK 500 13 ASN A 82 -92.55 -139.15 REMARK 500 13 LEU A 227 -178.57 -64.90 REMARK 500 14 GLN A 64 77.92 -103.40 REMARK 500 14 ASN A 82 -94.09 -139.01 REMARK 500 14 ALA A 203 -50.02 -125.05 REMARK 500 15 ASN A 82 -93.62 -137.74 REMARK 500 15 HIS A 230 94.83 -65.46 REMARK 500 16 GLN A 64 77.82 -100.08 REMARK 500 16 ASN A 82 -93.31 -139.07 REMARK 500 16 HIS A 229 32.83 -142.25 REMARK 500 17 GLN A 64 77.91 -100.16 REMARK 500 17 ASN A 82 -93.88 -138.59 REMARK 500 17 ASN A 226 -68.25 -154.90 REMARK 500 17 HIS A 232 -48.11 -137.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18044 RELATED DB: BMRB DBREF 2LLE A 1 11 UNP Q56312 CHEY_THEMA 1 11 DBREF 2LLE A 12 81 UNP Q56312 CHEY_THEMA 34 103 DBREF 2LLE A 82 226 UNP Q9X0C6 HIS6_THEMA 103 247 SEQADV 2LLE ILE A 4 UNP Q56312 ARG 4 ENGINEERED MUTATION SEQADV 2LLE GLY A 78 UNP Q56312 ASP 100 ENGINEERED MUTATION SEQADV 2LLE LEU A 95 UNP Q9X0C6 ILE 116 ENGINEERED MUTATION SEQADV 2LLE ALA A 201 UNP Q9X0C6 LEU 222 ENGINEERED MUTATION SEQADV 2LLE GLY A 213 UNP Q9X0C6 VAL 234 ENGINEERED MUTATION SEQADV 2LLE LEU A 227 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE GLU A 228 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 229 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 230 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 231 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 232 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 233 UNP Q9X0C6 EXPRESSION TAG SEQADV 2LLE HIS A 234 UNP Q9X0C6 EXPRESSION TAG SEQRES 1 A 234 MET GLY LYS ILE VAL LEU ILE VAL ASP ASP ALA THR ASN SEQRES 2 A 234 GLY ARG GLU ALA VAL GLU LYS TYR LYS GLU LEU LYS PRO SEQRES 3 A 234 ASP ILE VAL THR MET ASP ILE THR MET PRO GLU MET ASN SEQRES 4 A 234 GLY ILE ASP ALA ILE LYS GLU ILE MET LYS ILE ASP PRO SEQRES 5 A 234 ASN ALA LYS ILE ILE VAL CYS SER ALA MET GLY GLN GLN SEQRES 6 A 234 ALA MET VAL ILE GLU ALA ILE LYS ALA GLY ALA LYS GLY SEQRES 7 A 234 PHE ILE VAL ASN THR ALA ALA VAL GLU ASN PRO SER LEU SEQRES 8 A 234 ILE THR GLN LEU ALA GLN THR PHE GLY SER GLN ALA VAL SEQRES 9 A 234 VAL VAL ALA ILE ASP ALA LYS ARG VAL ASP GLY GLU PHE SEQRES 10 A 234 MET VAL PHE THR TYR SER GLY LYS LYS ASN THR GLY ILE SEQRES 11 A 234 LEU LEU ARG ASP TRP VAL VAL GLU VAL GLU LYS ARG GLY SEQRES 12 A 234 ALA GLY GLU ILE LEU LEU THR SER ILE ASP ARG ASP GLY SEQRES 13 A 234 THR LYS SER GLY TYR ASP THR GLU MET ILE ARG PHE VAL SEQRES 14 A 234 ARG PRO LEU THR THR LEU PRO ILE ILE ALA SER GLY GLY SEQRES 15 A 234 ALA GLY LYS MET GLU HIS PHE LEU GLU ALA PHE LEU ALA SEQRES 16 A 234 GLY ALA ASP ALA ALA ALA ALA ALA SER VAL PHE HIS PHE SEQRES 17 A 234 ARG GLU ILE ASP GLY ARG GLU LEU LYS GLU TYR LEU LYS SEQRES 18 A 234 LYS HIS GLY VAL ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 13 LYS A 25 1 13 HELIX 2 2 MET A 35 MET A 38 5 4 HELIX 3 3 ASN A 39 ASP A 51 1 13 HELIX 4 4 GLN A 64 ALA A 74 1 11 HELIX 5 5 ASN A 82 ASN A 88 1 7 HELIX 6 6 PRO A 89 GLY A 100 1 12 HELIX 7 7 LEU A 132 GLY A 143 1 12 HELIX 8 8 ASP A 162 ARG A 170 1 9 HELIX 9 9 PRO A 171 THR A 173 5 3 HELIX 10 10 LYS A 185 ALA A 195 1 11 HELIX 11 11 ALA A 203 PHE A 208 1 6 HELIX 12 12 ASP A 212 HIS A 223 1 12 SHEET 1 A11 LYS A 126 LEU A 131 0 SHEET 2 A11 GLU A 116 THR A 121 -1 N THR A 121 O LYS A 126 SHEET 3 A11 VAL A 104 VAL A 113 -1 N ASP A 109 O PHE A 120 SHEET 4 A11 GLU A 146 SER A 151 1 O THR A 150 N ALA A 110 SHEET 5 A11 ILE A 177 SER A 180 1 O ILE A 178 N ILE A 147 SHEET 6 A11 ALA A 199 ALA A 201 1 O ALA A 199 N ALA A 179 SHEET 7 A11 ILE A 4 VAL A 8 1 N VAL A 5 O ALA A 200 SHEET 8 A11 ILE A 28 ASP A 32 1 O THR A 30 N LEU A 6 SHEET 9 A11 LYS A 55 CYS A 59 1 O ILE A 57 N VAL A 29 SHEET 10 A11 GLY A 78 VAL A 81 1 O ILE A 80 N VAL A 58 SHEET 11 A11 VAL A 104 VAL A 113 1 O ALA A 107 N VAL A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1