data_2LLJ # _entry.id 2LLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LLJ pdb_00002llj 10.2210/pdb2llj/pdb RCSB RCSB102529 ? ? BMRB 18050 ? 10.13018/BMR18050 WWPDB D_1000102529 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-20 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_nmr_software 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LLJ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-10 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 18050 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jourdan, M.' 1 'Granzhan, A.' 2 'Guillot, R.' 3 'Dumy, P.' 4 'Teulade-Fichou, M.' 5 # _citation.id primary _citation.title 'Double threading through DNA: NMR structural study of a bis-naphthalene macrocycle bound to a thymine-thymine mismatch.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 5115 _citation.page_last 5128 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22362757 _citation.pdbx_database_id_DOI 10.1093/nar/gks067 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jourdan, M.' 1 ? primary 'Granzhan, A.' 2 ? primary 'Guillot, R.' 3 ? primary 'Dumy, P.' 4 ? primary 'Teulade-Fichou, M.P.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*CP*GP*TP*AP*GP*TP*GP*C)-3') ; 3365.196 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*CP*TP*TP*CP*GP*AP*CP*G)-3') ; 3334.186 1 ? ? ? ? 3 non-polymer syn ;6,22-dioxa-3,9,19,25-tetraazoniapentacyclo[25.5.3.3~11,17~.0~14,37~.0~30,34~]octatriaconta-1(33),11(38),12,14(37),15,17(36),27,29,31,34-decaene ; 516.717 1 ? ? ? ? 4 water nat water 18.015 51 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DC)(DG)(DT)(DA)(DG)(DT)(DG)(DC)' CGTCGTAGTGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DC)(DT)(DT)(DC)(DG)(DA)(DC)(DG)' GCACTTCGACG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;6,22-dioxa-3,9,19,25-tetraazoniapentacyclo[25.5.3.3~11,17~.0~14,37~.0~30,34~]octatriaconta-1(33),11(38),12,14(37),15,17(36),27,29,31,34-decaene ; LLJ 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DC n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 LLJ non-polymer . ;6,22-dioxa-3,9,19,25-tetraazoniapentacyclo[25.5.3.3~11,17~.0~14,37~.0~30,34~]octatriaconta-1(33),11(38),12,14(37),15,17(36),27,29,31,34-decaene ; '2,8,19,25-tetraaza-5,22-dioxa-[9,9](2,7)naphthalenophane' 'C32 H44 N4 O2 4' 516.717 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n B 2 1 DG 1 12 12 DG DG B . n B 2 2 DC 2 13 13 DC DC B . n B 2 3 DA 3 14 14 DA DA B . n B 2 4 DC 4 15 15 DC DC B . n B 2 5 DT 5 16 16 DT DT B . n B 2 6 DT 6 17 17 DT DT B . n B 2 7 DC 7 18 18 DC DC B . n B 2 8 DG 8 19 19 DG DG B . n B 2 9 DA 9 20 20 DA DA B . n B 2 10 DC 10 21 21 DC DC B . n B 2 11 DG 11 22 22 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LLJ 1 101 23 LLJ LLJ B . D 4 HOH 1 101 124 HOH HOH A . D 4 HOH 2 102 142 HOH HOH A . D 4 HOH 3 103 354 HOH HOH A . D 4 HOH 4 104 390 HOH HOH A . D 4 HOH 5 105 431 HOH HOH A . D 4 HOH 6 106 848 HOH HOH A . D 4 HOH 7 107 1171 HOH HOH A . D 4 HOH 8 108 1172 HOH HOH A . D 4 HOH 9 109 1178 HOH HOH A . D 4 HOH 10 110 1183 HOH HOH A . D 4 HOH 11 111 1198 HOH HOH A . D 4 HOH 12 112 1211 HOH HOH A . D 4 HOH 13 113 1229 HOH HOH A . D 4 HOH 14 114 1235 HOH HOH A . D 4 HOH 15 115 1990 HOH HOH A . D 4 HOH 16 116 2002 HOH HOH A . D 4 HOH 17 117 2008 HOH HOH A . D 4 HOH 18 118 2098 HOH HOH A . D 4 HOH 19 119 2118 HOH HOH A . E 4 HOH 1 201 88 HOH HOH B . E 4 HOH 2 202 120 HOH HOH B . E 4 HOH 3 203 143 HOH HOH B . E 4 HOH 4 204 324 HOH HOH B . E 4 HOH 5 205 329 HOH HOH B . E 4 HOH 6 206 330 HOH HOH B . E 4 HOH 7 207 331 HOH HOH B . E 4 HOH 8 208 343 HOH HOH B . E 4 HOH 9 209 352 HOH HOH B . E 4 HOH 10 210 366 HOH HOH B . E 4 HOH 11 211 368 HOH HOH B . E 4 HOH 12 212 374 HOH HOH B . E 4 HOH 13 213 394 HOH HOH B . E 4 HOH 14 214 414 HOH HOH B . E 4 HOH 15 215 417 HOH HOH B . E 4 HOH 16 216 427 HOH HOH B . E 4 HOH 17 217 433 HOH HOH B . E 4 HOH 18 218 648 HOH HOH B . E 4 HOH 19 219 668 HOH HOH B . E 4 HOH 20 220 677 HOH HOH B . E 4 HOH 21 221 679 HOH HOH B . E 4 HOH 22 222 707 HOH HOH B . E 4 HOH 23 223 928 HOH HOH B . E 4 HOH 24 224 1180 HOH HOH B . E 4 HOH 25 225 1263 HOH HOH B . E 4 HOH 26 226 1441 HOH HOH B . E 4 HOH 27 227 1519 HOH HOH B . E 4 HOH 28 228 1550 HOH HOH B . E 4 HOH 29 229 1570 HOH HOH B . E 4 HOH 30 230 1948 HOH HOH B . E 4 HOH 31 231 2010 HOH HOH B . E 4 HOH 32 232 2087 HOH HOH B . # _cell.entry_id 2LLJ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2LLJ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LLJ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LLJ _struct.title 'Structure of a bis-naphthalene bound to a thymine-thymine DNA mismatch' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LLJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA thymine mismatch, macrocyle, bisintercalation, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2LLJ 2LLJ 1 ? ? ? 2 PDB 2LLJ 2LLJ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LLJ A 1 ? 11 ? 2LLJ 1 ? 11 ? 1 11 2 2 2LLJ B 1 ? 11 ? 2LLJ 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 3 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 3 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B LLJ 101 ? 19 'BINDING SITE FOR RESIDUE LLJ B 101' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 19 DT A 6 ? DT A 6 . ? 1_555 ? 3 AC1 19 DA A 7 ? DA A 7 . ? 1_555 ? 4 AC1 19 DG A 8 ? DG A 8 . ? 1_555 ? 5 AC1 19 HOH D . ? HOH A 108 . ? 1_555 ? 6 AC1 19 HOH D . ? HOH A 109 . ? 1_555 ? 7 AC1 19 HOH D . ? HOH A 112 . ? 1_555 ? 8 AC1 19 HOH D . ? HOH A 114 . ? 1_555 ? 9 AC1 19 DC B 4 ? DC B 15 . ? 1_555 ? 10 AC1 19 DT B 5 ? DT B 16 . ? 1_555 ? 11 AC1 19 DT B 6 ? DT B 17 . ? 1_555 ? 12 AC1 19 DC B 7 ? DC B 18 . ? 1_555 ? 13 AC1 19 HOH E . ? HOH B 206 . ? 1_555 ? 14 AC1 19 HOH E . ? HOH B 215 . ? 1_555 ? 15 AC1 19 HOH E . ? HOH B 216 . ? 1_555 ? 16 AC1 19 HOH E . ? HOH B 217 . ? 1_555 ? 17 AC1 19 HOH E . ? HOH B 223 . ? 1_555 ? 18 AC1 19 HOH E . ? HOH B 225 . ? 1_555 ? 19 AC1 19 HOH E . ? HOH B 228 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.557 1.512 0.045 0.007 N 2 2 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.556 1.512 0.044 0.007 N 3 3 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.555 1.512 0.043 0.007 N 4 3 C8 B DA 20 ? ? N9 B DA 20 ? ? 1.325 1.373 -0.048 0.008 N 5 4 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.557 1.512 0.045 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.19 121.90 -4.71 0.70 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.70 108.30 5.40 0.30 N 3 1 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 97.22 102.40 -5.18 0.80 N 4 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.15 108.30 4.85 0.30 N 5 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.76 108.30 2.46 0.30 N 6 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.39 121.90 -4.51 0.70 N 7 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.39 108.30 2.09 0.30 N 8 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.98 108.30 3.68 0.30 N 9 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.52 108.30 2.22 0.30 N 10 1 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 112.65 117.00 -4.35 0.50 N 11 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.50 117.70 3.80 0.50 N 12 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.27 118.60 -5.33 0.60 N 13 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.56 108.30 2.26 0.30 N 14 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.42 119.00 4.42 0.60 N 15 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 115.06 122.90 -7.84 0.60 N 16 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.53 108.30 6.23 0.30 N 17 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.14 108.30 3.84 0.30 N 18 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.64 121.90 -4.26 0.70 N 19 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.05 108.30 2.75 0.30 N 20 1 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 117.19 121.90 -4.71 0.70 N 21 1 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 112.84 117.00 -4.16 0.50 N 22 1 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.84 117.70 4.14 0.50 N 23 1 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 111.70 118.60 -6.90 0.60 N 24 1 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 97.92 102.20 -4.28 0.70 N 25 1 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 125.27 114.30 10.97 1.40 N 26 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.73 121.90 -5.17 0.70 N 27 1 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.86 110.10 -6.24 1.00 N 28 1 "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? 95.88 102.20 -6.32 0.70 N 29 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 98.52 105.90 -7.38 0.80 N 30 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 133.68 108.30 25.38 0.30 N 31 1 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 122.52 118.00 4.52 0.60 N 32 1 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 119.78 123.70 -3.92 0.60 N 33 1 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 115.22 122.90 -7.68 0.60 N 34 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.57 108.30 3.27 0.30 N 35 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.86 122.90 -4.04 0.60 N 36 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.61 108.30 2.31 0.30 N 37 1 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.14 121.90 -5.76 0.70 N 38 1 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DA 20 ? ? 127.52 119.70 7.82 1.20 Y 39 1 "C3'" B DA 20 ? ? "C2'" B DA 20 ? ? "C1'" B DA 20 ? ? 97.41 102.40 -4.99 0.80 N 40 1 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 115.94 108.30 7.64 0.30 N 41 1 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 112.77 117.00 -4.23 0.50 N 42 1 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.34 117.70 3.64 0.50 N 43 1 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.25 118.60 -5.35 0.60 N 44 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.85 108.30 6.55 0.30 N 45 1 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.69 121.90 -5.21 0.70 N 46 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.98 108.30 5.68 0.30 N 47 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.00 121.90 -4.90 0.70 N 48 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.68 108.30 5.38 0.30 N 49 2 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 97.13 102.40 -5.27 0.80 N 50 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.48 108.30 5.18 0.30 N 51 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.12 108.30 1.82 0.30 N 52 2 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.78 121.90 -5.12 0.70 N 53 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.43 108.30 3.13 0.30 N 54 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.13 122.90 -3.77 0.60 N 55 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.20 108.30 2.90 0.30 N 56 2 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.29 117.00 -3.71 0.50 N 57 2 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.59 117.70 3.89 0.50 N 58 2 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.47 118.60 -5.13 0.60 N 59 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.82 108.30 2.52 0.30 N 60 2 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.76 118.00 3.76 0.60 N 61 2 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.14 119.00 4.14 0.60 N 62 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 115.09 122.90 -7.81 0.60 N 63 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.10 108.30 6.80 0.30 N 64 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 113.37 108.30 5.07 0.30 N 65 2 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.48 121.90 -4.42 0.70 N 66 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.67 108.30 2.37 0.30 N 67 2 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.26 108.30 1.96 0.30 N 68 2 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 117.30 121.90 -4.60 0.70 N 69 2 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 113.15 117.00 -3.85 0.50 N 70 2 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.53 117.70 3.83 0.50 N 71 2 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 112.02 118.60 -6.58 0.60 N 72 2 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 97.55 102.20 -4.65 0.70 N 73 2 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 125.27 114.30 10.97 1.40 N 74 2 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 117.45 121.90 -4.45 0.70 N 75 2 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.73 110.10 -6.37 1.00 N 76 2 "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? 95.69 102.20 -6.51 0.70 N 77 2 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 98.26 105.90 -7.64 0.80 N 78 2 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 134.24 108.30 25.94 0.30 N 79 2 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 122.18 118.00 4.18 0.60 N 80 2 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 120.03 123.70 -3.67 0.60 N 81 2 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 115.13 122.90 -7.77 0.60 N 82 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.56 108.30 3.26 0.30 N 83 2 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.59 122.90 -4.31 0.60 N 84 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.31 108.30 3.01 0.30 N 85 2 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.91 121.90 -4.99 0.70 N 86 2 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DA 20 ? ? 127.49 119.70 7.79 1.20 Y 87 2 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 116.19 108.30 7.89 0.30 N 88 2 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 112.99 117.00 -4.01 0.50 N 89 2 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.28 117.70 3.58 0.50 N 90 2 C5 B DA 20 ? ? N7 B DA 20 ? ? C8 B DA 20 ? ? 100.88 103.90 -3.02 0.50 N 91 2 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.50 118.60 -5.10 0.60 N 92 2 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 115.21 108.30 6.91 0.30 N 93 2 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.69 121.90 -5.21 0.70 N 94 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.59 108.30 4.29 0.30 N 95 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.44 121.90 -4.46 0.70 N 96 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.53 108.30 5.23 0.30 N 97 3 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 97.08 102.40 -5.32 0.80 N 98 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.50 108.30 5.20 0.30 N 99 3 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.37 121.90 -4.53 0.70 N 100 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.37 108.30 3.07 0.30 N 101 3 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.04 122.90 -3.86 0.60 N 102 3 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.18 108.30 2.88 0.30 N 103 3 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.29 117.00 -3.71 0.50 N 104 3 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.75 117.70 4.05 0.50 N 105 3 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.09 118.60 -5.51 0.60 N 106 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.75 108.30 2.45 0.30 N 107 3 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.67 119.00 4.67 0.60 N 108 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 115.04 122.90 -7.86 0.60 N 109 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.15 108.30 6.85 0.30 N 110 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.97 108.30 4.67 0.30 N 111 3 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.86 121.90 -5.04 0.70 N 112 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.67 108.30 3.37 0.30 N 113 3 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 112.80 117.00 -4.20 0.50 N 114 3 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.69 117.70 3.99 0.50 N 115 3 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 112.05 118.60 -6.55 0.60 N 116 3 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 124.69 114.30 10.39 1.40 N 117 3 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 117.12 121.90 -4.78 0.70 N 118 3 "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? 95.36 102.20 -6.84 0.70 N 119 3 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 97.51 105.90 -8.39 0.80 N 120 3 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 133.49 108.30 25.19 0.30 N 121 3 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 122.42 118.00 4.42 0.60 N 122 3 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 119.72 123.70 -3.98 0.60 N 123 3 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 114.88 122.90 -8.02 0.60 N 124 3 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.90 108.30 2.60 0.30 N 125 3 N3 B DT 17 ? ? C2 B DT 17 ? ? O2 B DT 17 ? ? 118.04 122.30 -4.26 0.60 N 126 3 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.59 122.90 -4.31 0.60 N 127 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.37 108.30 3.07 0.30 N 128 3 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.78 121.90 -5.12 0.70 N 129 3 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DA 20 ? ? 127.82 119.70 8.12 1.20 Y 130 3 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 115.66 108.30 7.36 0.30 N 131 3 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 112.94 117.00 -4.06 0.50 N 132 3 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.21 117.70 3.51 0.50 N 133 3 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.72 118.60 -4.88 0.60 N 134 3 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.87 108.30 6.57 0.30 N 135 3 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.92 121.90 -4.98 0.70 N 136 3 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.80 108.30 4.50 0.30 N 137 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.98 121.90 -4.92 0.70 N 138 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.93 108.30 5.63 0.30 N 139 4 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 97.01 102.40 -5.39 0.80 N 140 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.35 108.30 5.05 0.30 N 141 4 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.63 121.90 -5.27 0.70 N 142 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.26 108.30 1.96 0.30 N 143 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.44 108.30 3.14 0.30 N 144 4 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.08 122.90 -3.82 0.60 N 145 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.63 108.30 3.33 0.30 N 146 4 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.24 117.00 -3.76 0.50 N 147 4 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.25 117.70 3.55 0.50 N 148 4 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.40 118.60 -5.20 0.60 N 149 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.81 108.30 2.51 0.30 N 150 4 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.64 118.00 3.64 0.60 N 151 4 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.49 119.00 4.49 0.60 N 152 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 114.87 122.90 -8.03 0.60 N 153 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.65 108.30 6.35 0.30 N 154 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.60 108.30 4.30 0.30 N 155 4 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.62 121.90 -4.28 0.70 N 156 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.87 108.30 2.57 0.30 N 157 4 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 117.35 121.90 -4.55 0.70 N 158 4 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 112.95 117.00 -4.05 0.50 N 159 4 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.61 117.70 3.91 0.50 N 160 4 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 112.05 118.60 -6.55 0.60 N 161 4 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 97.71 102.20 -4.49 0.70 N 162 4 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 124.74 114.30 10.44 1.40 N 163 4 "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? 95.60 102.20 -6.60 0.70 N 164 4 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 97.26 105.90 -8.64 0.80 N 165 4 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 133.82 108.30 25.52 0.30 N 166 4 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 122.34 118.00 4.34 0.60 N 167 4 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 119.78 123.70 -3.92 0.60 N 168 4 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 115.30 122.90 -7.60 0.60 N 169 4 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.85 108.30 3.55 0.30 N 170 4 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.85 122.90 -4.05 0.60 N 171 4 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.85 108.30 2.55 0.30 N 172 4 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.83 121.90 -5.07 0.70 N 173 4 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DA 20 ? ? 127.63 119.70 7.93 1.20 Y 174 4 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 116.27 108.30 7.97 0.30 N 175 4 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 112.72 117.00 -4.28 0.50 N 176 4 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.51 117.70 3.81 0.50 N 177 4 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.12 118.60 -5.48 0.60 N 178 4 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.70 108.30 6.40 0.30 N 179 4 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.96 121.90 -4.94 0.70 N 180 4 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.75 108.30 4.45 0.30 N 181 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.52 121.90 -4.38 0.70 N 182 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.86 108.30 5.56 0.30 N 183 5 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 97.10 102.40 -5.30 0.80 N 184 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.06 108.30 4.76 0.30 N 185 5 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.44 108.30 2.14 0.30 N 186 5 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.16 121.90 -4.74 0.70 N 187 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.13 108.30 1.83 0.30 N 188 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.26 108.30 2.96 0.30 N 189 5 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.18 122.90 -3.72 0.60 N 190 5 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.20 108.30 2.90 0.30 N 191 5 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.39 117.00 -3.61 0.50 N 192 5 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.19 117.70 3.49 0.50 N 193 5 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.35 118.60 -5.25 0.60 N 194 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.42 108.30 2.12 0.30 N 195 5 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.82 118.00 3.82 0.60 N 196 5 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.17 119.00 4.17 0.60 N 197 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 115.01 122.90 -7.89 0.60 N 198 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.16 108.30 6.86 0.30 N 199 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 113.47 108.30 5.17 0.30 N 200 5 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.67 121.90 -4.23 0.70 N 201 5 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.82 108.30 2.52 0.30 N 202 5 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 117.40 121.90 -4.50 0.70 N 203 5 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 103.76 108.00 -4.24 0.70 N 204 5 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 112.68 117.00 -4.32 0.50 N 205 5 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.62 117.70 3.92 0.50 N 206 5 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 111.75 118.60 -6.85 0.60 N 207 5 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 124.79 114.30 10.49 1.40 N 208 5 "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? 95.93 102.20 -6.27 0.70 N 209 5 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 97.72 105.90 -8.18 0.80 N 210 5 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 133.71 108.30 25.41 0.30 N 211 5 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 122.65 118.00 4.65 0.60 N 212 5 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 119.75 123.70 -3.95 0.60 N 213 5 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 114.70 122.90 -8.20 0.60 N 214 5 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.51 108.30 3.21 0.30 N 215 5 N3 B DT 17 ? ? C2 B DT 17 ? ? O2 B DT 17 ? ? 118.61 122.30 -3.69 0.60 N 216 5 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.88 122.90 -4.02 0.60 N 217 5 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.22 108.30 2.92 0.30 N 218 5 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.89 121.90 -5.01 0.70 N 219 5 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DA 20 ? ? 127.76 119.70 8.06 1.20 Y 220 5 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 115.77 108.30 7.47 0.30 N 221 5 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.00 117.00 -4.00 0.50 N 222 5 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.42 117.70 3.72 0.50 N 223 5 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.55 118.60 -5.05 0.60 N 224 5 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 115.59 108.30 7.29 0.30 N 225 5 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.72 121.90 -5.18 0.70 N 226 5 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.81 108.30 4.51 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 5 ? ? 0.119 'SIDE CHAIN' 2 1 DT A 6 ? ? 0.114 'SIDE CHAIN' 3 1 DA A 7 ? ? 0.075 'SIDE CHAIN' 4 1 DG A 8 ? ? 0.097 'SIDE CHAIN' 5 1 DT A 9 ? ? 0.100 'SIDE CHAIN' 6 1 DG A 10 ? ? 0.092 'SIDE CHAIN' 7 1 DC A 11 ? ? 0.112 'SIDE CHAIN' 8 1 DG B 12 ? ? 0.119 'SIDE CHAIN' 9 1 DC B 13 ? ? 0.072 'SIDE CHAIN' 10 1 DC B 15 ? ? 0.120 'SIDE CHAIN' 11 1 DT B 16 ? ? 0.119 'SIDE CHAIN' 12 1 DC B 18 ? ? 0.090 'SIDE CHAIN' 13 1 DG B 22 ? ? 0.098 'SIDE CHAIN' 14 2 DG A 5 ? ? 0.122 'SIDE CHAIN' 15 2 DT A 6 ? ? 0.106 'SIDE CHAIN' 16 2 DA A 7 ? ? 0.075 'SIDE CHAIN' 17 2 DG A 8 ? ? 0.102 'SIDE CHAIN' 18 2 DT A 9 ? ? 0.094 'SIDE CHAIN' 19 2 DG A 10 ? ? 0.092 'SIDE CHAIN' 20 2 DC A 11 ? ? 0.100 'SIDE CHAIN' 21 2 DG B 12 ? ? 0.122 'SIDE CHAIN' 22 2 DC B 13 ? ? 0.071 'SIDE CHAIN' 23 2 DC B 15 ? ? 0.118 'SIDE CHAIN' 24 2 DT B 16 ? ? 0.127 'SIDE CHAIN' 25 2 DC B 18 ? ? 0.087 'SIDE CHAIN' 26 2 DG B 22 ? ? 0.108 'SIDE CHAIN' 27 3 DG A 5 ? ? 0.124 'SIDE CHAIN' 28 3 DT A 6 ? ? 0.103 'SIDE CHAIN' 29 3 DA A 7 ? ? 0.078 'SIDE CHAIN' 30 3 DG A 8 ? ? 0.100 'SIDE CHAIN' 31 3 DT A 9 ? ? 0.101 'SIDE CHAIN' 32 3 DG A 10 ? ? 0.094 'SIDE CHAIN' 33 3 DC A 11 ? ? 0.106 'SIDE CHAIN' 34 3 DG B 12 ? ? 0.128 'SIDE CHAIN' 35 3 DC B 13 ? ? 0.074 'SIDE CHAIN' 36 3 DA B 14 ? ? 0.058 'SIDE CHAIN' 37 3 DC B 15 ? ? 0.113 'SIDE CHAIN' 38 3 DT B 16 ? ? 0.117 'SIDE CHAIN' 39 3 DC B 18 ? ? 0.088 'SIDE CHAIN' 40 3 DG B 22 ? ? 0.102 'SIDE CHAIN' 41 4 DG A 5 ? ? 0.115 'SIDE CHAIN' 42 4 DT A 6 ? ? 0.100 'SIDE CHAIN' 43 4 DA A 7 ? ? 0.075 'SIDE CHAIN' 44 4 DG A 8 ? ? 0.102 'SIDE CHAIN' 45 4 DT A 9 ? ? 0.099 'SIDE CHAIN' 46 4 DG A 10 ? ? 0.087 'SIDE CHAIN' 47 4 DC A 11 ? ? 0.105 'SIDE CHAIN' 48 4 DG B 12 ? ? 0.114 'SIDE CHAIN' 49 4 DC B 13 ? ? 0.069 'SIDE CHAIN' 50 4 DA B 14 ? ? 0.054 'SIDE CHAIN' 51 4 DC B 15 ? ? 0.113 'SIDE CHAIN' 52 4 DT B 16 ? ? 0.120 'SIDE CHAIN' 53 4 DC B 18 ? ? 0.088 'SIDE CHAIN' 54 4 DG B 22 ? ? 0.100 'SIDE CHAIN' 55 5 DG A 5 ? ? 0.125 'SIDE CHAIN' 56 5 DT A 6 ? ? 0.106 'SIDE CHAIN' 57 5 DA A 7 ? ? 0.071 'SIDE CHAIN' 58 5 DG A 8 ? ? 0.098 'SIDE CHAIN' 59 5 DT A 9 ? ? 0.100 'SIDE CHAIN' 60 5 DG A 10 ? ? 0.091 'SIDE CHAIN' 61 5 DC A 11 ? ? 0.109 'SIDE CHAIN' 62 5 DG B 12 ? ? 0.121 'SIDE CHAIN' 63 5 DC B 13 ? ? 0.068 'SIDE CHAIN' 64 5 DA B 14 ? ? 0.055 'SIDE CHAIN' 65 5 DC B 15 ? ? 0.111 'SIDE CHAIN' 66 5 DT B 16 ? ? 0.119 'SIDE CHAIN' 67 5 DC B 18 ? ? 0.085 'SIDE CHAIN' 68 5 DG B 22 ? ? 0.104 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LLJ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LLJ _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents ;1.5 mM DNA (5'-D(*CP*GP*TP*CP*GP*TP*AP*GP*TP*GP*C)-3'), 1.5 mM DNA (5'-D(*GP*CP*AP*CP*TP*TP*CP*GP*AP*CP*G)-3'), 1.5 mM 2,7-bisnaphthalene, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*CP*GP*TP*CP*GP*TP*AP*GP*TP*GP*C)-3')-1 ; 1.5 ? mM ? 1 ;DNA (5'-D(*GP*CP*AP*CP*TP*TP*CP*GP*AP*CP*G)-3')-2 ; 1.5 ? mM ? 1 2,7-bisnaphthalene-3 1.5 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.06 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2LLJ _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' 'structure solution' Amber 10.1 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' refinement Amber 10.1 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 LLJ C1 C Y N 147 LLJ N1 N N N 148 LLJ O1 O N N 149 LLJ C2 C Y N 150 LLJ N2 N N N 151 LLJ O2 O N N 152 LLJ C3 C Y N 153 LLJ N3 N N N 154 LLJ C4 C Y N 155 LLJ N4 N N N 156 LLJ C5 C Y N 157 LLJ C6 C Y N 158 LLJ C7 C Y N 159 LLJ C8 C Y N 160 LLJ C9 C Y N 161 LLJ C10 C Y N 162 LLJ C11 C N N 163 LLJ C12 C Y N 164 LLJ C13 C Y N 165 LLJ C14 C Y N 166 LLJ C15 C Y N 167 LLJ C16 C Y N 168 LLJ C17 C Y N 169 LLJ C18 C Y N 170 LLJ C19 C Y N 171 LLJ C20 C Y N 172 LLJ C21 C Y N 173 LLJ C22 C N N 174 LLJ C23 C N N 175 LLJ C24 C N N 176 LLJ C25 C N N 177 LLJ C26 C N N 178 LLJ C27 C N N 179 LLJ C28 C N N 180 LLJ C29 C N N 181 LLJ C30 C N N 182 LLJ C31 C N N 183 LLJ C32 C N N 184 LLJ H1 H N N 185 LLJ H3N2 H N N 186 LLJ H4N2 H N N 187 LLJ H3 H N N 188 LLJ H6 H N N 189 LLJ HN1 H N N 190 LLJ H17 H N N 191 LLJ HN1A H N N 192 LLJ H18 H N N 193 LLJ H10 H N N 194 LLJ H111 H N N 195 LLJ H211 H N N 196 LLJ H12 H N N 197 LLJ H14 H N N 198 LLJ H15 H N N 199 LLJ H18A H N N 200 LLJ H19 H N N 201 LLJ H21 H N N 202 LLJ H122 H N N 203 LLJ H222 H N N 204 LLJ H123 H N N 205 LLJ H223 H N N 206 LLJ H124 H N N 207 LLJ H224 H N N 208 LLJ H125 H N N 209 LLJ H225 H N N 210 LLJ H126 H N N 211 LLJ H226 H N N 212 LLJ H127 H N N 213 LLJ H227 H N N 214 LLJ H128 H N N 215 LLJ H228 H N N 216 LLJ HN3 H N N 217 LLJ H129 H N N 218 LLJ H229 H N N 219 LLJ HN3A H N N 220 LLJ H130 H N N 221 LLJ H230 H N N 222 LLJ H131 H N N 223 LLJ H231 H N N 224 LLJ H132 H N N 225 LLJ H232 H N N 226 LLJ HN4 H N N 227 LLJ HN4A H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 LLJ C1 C2 doub Y N 152 LLJ C1 C3 sing Y N 153 LLJ C1 H1 sing N N 154 LLJ N1 C11 sing N N 155 LLJ N1 C22 sing N N 156 LLJ N1 HN1 sing N N 157 LLJ N1 HN1A sing N N 158 LLJ O1 C23 sing N N 159 LLJ O1 C24 sing N N 160 LLJ C2 C6 sing Y N 161 LLJ C2 C26 sing N N 162 LLJ N2 C25 sing N N 163 LLJ N2 C26 sing N N 164 LLJ N2 H3N2 sing N N 165 LLJ N2 H4N2 sing N N 166 LLJ O2 C29 sing N N 167 LLJ O2 C30 sing N N 168 LLJ C3 C4 doub Y N 169 LLJ C3 H3 sing N N 170 LLJ N3 C27 sing N N 171 LLJ N3 C28 sing N N 172 LLJ N3 HN3 sing N N 173 LLJ N3 HN3A sing N N 174 LLJ C4 C5 sing Y N 175 LLJ C4 C7 sing Y N 176 LLJ N4 C31 sing N N 177 LLJ N4 C32 sing N N 178 LLJ N4 HN4 sing N N 179 LLJ N4 HN4A sing N N 180 LLJ C5 C6 doub Y N 181 LLJ C5 C10 sing Y N 182 LLJ C6 H6 sing N N 183 LLJ C7 C8 doub Y N 184 LLJ C7 H17 sing N N 185 LLJ C8 C9 sing Y N 186 LLJ C8 H18 sing N N 187 LLJ C9 C10 doub Y N 188 LLJ C9 C32 sing N N 189 LLJ C10 H10 sing N N 190 LLJ C11 C20 sing N N 191 LLJ C11 H111 sing N N 192 LLJ C11 H211 sing N N 193 LLJ C12 C13 doub Y N 194 LLJ C12 C17 sing Y N 195 LLJ C12 H12 sing N N 196 LLJ C13 C14 sing Y N 197 LLJ C13 C27 sing N N 198 LLJ C14 C15 doub Y N 199 LLJ C14 H14 sing N N 200 LLJ C15 C16 sing Y N 201 LLJ C15 H15 sing N N 202 LLJ C16 C17 doub Y N 203 LLJ C16 C18 sing Y N 204 LLJ C17 C21 sing Y N 205 LLJ C18 C19 doub Y N 206 LLJ C18 H18A sing N N 207 LLJ C19 C20 sing Y N 208 LLJ C19 H19 sing N N 209 LLJ C20 C21 doub Y N 210 LLJ C21 H21 sing N N 211 LLJ C22 C23 sing N N 212 LLJ C22 H122 sing N N 213 LLJ C22 H222 sing N N 214 LLJ C23 H123 sing N N 215 LLJ C23 H223 sing N N 216 LLJ C24 C25 sing N N 217 LLJ C24 H124 sing N N 218 LLJ C24 H224 sing N N 219 LLJ C25 H125 sing N N 220 LLJ C25 H225 sing N N 221 LLJ C26 H126 sing N N 222 LLJ C26 H226 sing N N 223 LLJ C27 H127 sing N N 224 LLJ C27 H227 sing N N 225 LLJ C28 C29 sing N N 226 LLJ C28 H128 sing N N 227 LLJ C28 H228 sing N N 228 LLJ C29 H129 sing N N 229 LLJ C29 H229 sing N N 230 LLJ C30 C31 sing N N 231 LLJ C30 H130 sing N N 232 LLJ C30 H230 sing N N 233 LLJ C31 H131 sing N N 234 LLJ C31 H231 sing N N 235 LLJ C32 H132 sing N N 236 LLJ C32 H232 sing N N 237 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LLJ 'double helix' 2LLJ 'b-form double helix' 2LLJ 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.282 -0.094 -0.242 -15.226 1.046 -0.463 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 0.137 -0.041 0.103 1.476 4.760 -1.075 2 A_DG2:DC21_B A 2 ? B 21 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.284 -0.020 -0.074 -1.191 -9.734 -0.801 3 A_DT3:DA20_B A 3 ? B 20 ? 20 1 1 A DC 4 1_555 B DG 8 1_555 0.002 -0.075 -0.262 -9.630 1.073 0.443 4 A_DC4:DG19_B A 4 ? B 19 ? 19 1 1 A DG 5 1_555 B DC 7 1_555 0.412 0.087 -0.966 -39.469 -12.650 -1.161 5 A_DG5:DC18_B A 5 ? B 18 ? 19 1 1 A DG 8 1_555 B DC 4 1_555 -0.442 -0.204 -0.740 8.333 3.332 0.655 6 A_DG8:DC15_B A 8 ? B 15 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 0.020 -0.073 -0.490 1.506 -3.077 5.776 7 A_DT9:DA14_B A 9 ? B 14 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.288 -0.060 0.037 -13.381 -7.558 0.338 8 A_DG10:DC13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.770 -0.290 -0.396 -4.414 -7.892 -1.399 9 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 -2.167 -0.238 2.922 -9.815 9.624 12.915 -6.192 1.048 3.011 32.893 33.548 18.841 1 AA_DC1DG2:DC21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 0.236 0.148 3.332 0.383 11.096 26.173 -2.332 -0.391 3.136 23.218 -0.801 28.392 2 AA_DG2DT3:DA20DC21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DT 3 1_555 B DA 9 1_555 A DC 4 1_555 B DG 8 1_555 -0.354 0.102 3.480 2.332 13.198 28.836 -2.410 1.106 3.185 24.877 -4.394 31.739 3 AA_DT3DC4:DG19DA20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DC 4 1_555 B DG 8 1_555 A DG 5 1_555 B DC 7 1_555 0.620 0.002 4.152 3.989 31.435 34.965 -3.415 -0.346 3.190 43.025 -5.459 46.852 4 AA_DC4DG5:DC18DG19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DG 8 1_555 B DC 4 1_555 A DT 9 1_555 B DA 3 1_555 1.047 0.074 3.402 -0.774 16.170 25.281 -3.361 -2.194 2.894 32.982 1.579 29.949 5 AA_DG8DT9:DA14DC15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.611 -1.105 3.273 -0.990 27.248 31.075 -4.204 -0.966 1.768 42.131 1.530 41.119 6 AA_DT9DG10:DC13DA14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 -0.884 0.197 3.072 5.895 0.698 31.320 0.243 2.594 2.866 1.278 -10.797 31.864 7 AA_DG10DC11:DG12DC13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Varian UNITYPLUS 1 'Varian UnityPlus' 800 Varian UNITY 2 'Varian Unity' # _atom_sites.entry_id 2LLJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_