HEADER UNKNOWN FUNCTION 18-NOV-11 2LLZ TITLE GHOS (YJDK) MONOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YJDK; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YJDK, B4128, JW4089; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: RP1B KEYWDS RNASE, BIOFILM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.LORD,W.PETI,R.PAGE REVDAT 4 14-JUN-23 2LLZ 1 REMARK SEQADV REVDAT 3 16-JAN-13 2LLZ 1 JRNL REVDAT 2 19-SEP-12 2LLZ 1 JRNL REVDAT 1 05-SEP-12 2LLZ 0 JRNL AUTH X.WANG,D.M.LORD,H.Y.CHENG,D.O.OSBOURNE,S.H.HONG, JRNL AUTH 2 V.SANCHEZ-TORRES,C.QUIROGA,K.ZHENG,T.HERRMANN,W.PETI, JRNL AUTH 3 M.J.BENEDIK,R.PAGE,T.K.WOOD JRNL TITL A NEW TYPE V TOXIN-ANTITOXIN SYSTEM WHERE MRNA FOR TOXIN JRNL TITL 2 GHOT IS CLEAVED BY ANTITOXIN GHOS. JRNL REF NAT.CHEM.BIOL. V. 8 855 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22941047 JRNL DOI 10.1038/NCHEMBIO.1062 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102545. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.14 MM [U-99% 13C; U-99% 15N] REMARK 210 YJDK, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.5 MM REMARK 210 TCEP, 90% H2O/10% D2O; 1.76 MM REMARK 210 YJDK, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.5 MM REMARK 210 TCEP, 100% D2O; 1.42 MM [U-100% REMARK 210 15N] YJDK, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM TCEP, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-1H COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, UNIO REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 THR A 60 N THR A 60 CA -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 47.47 -102.58 REMARK 500 1 TYR A 18 144.59 -175.01 REMARK 500 1 MET A 36 -154.33 -92.51 REMARK 500 1 ASP A 44 -169.53 -79.73 REMARK 500 1 ASN A 53 57.56 -64.99 REMARK 500 1 GLU A 54 -55.21 -122.14 REMARK 500 1 ASN A 55 -33.42 -156.79 REMARK 500 1 THR A 60 30.09 -90.49 REMARK 500 1 PRO A 80 -76.30 -60.97 REMARK 500 2 MET A 36 -144.91 -96.32 REMARK 500 2 ASN A 53 60.99 -66.00 REMARK 500 2 ASN A 55 -32.94 -174.81 REMARK 500 2 PRO A 80 -76.95 -57.57 REMARK 500 2 ASP A 81 142.39 -175.27 REMARK 500 2 TYR A 99 -161.41 -121.73 REMARK 500 3 MET A 36 -157.48 -87.14 REMARK 500 3 ASP A 44 -169.87 -79.98 REMARK 500 3 ASN A 53 33.33 -65.64 REMARK 500 3 ASN A 55 -27.69 173.46 REMARK 500 3 PRO A 80 -74.81 -57.18 REMARK 500 3 ASP A 81 138.35 -170.95 REMARK 500 3 TYR A 99 -169.08 -79.53 REMARK 500 4 MET A 36 -148.52 -92.28 REMARK 500 4 ASP A 44 -158.69 -79.58 REMARK 500 4 ASN A 53 22.90 -62.99 REMARK 500 4 ASN A 55 -30.00 -176.81 REMARK 500 4 PRO A 80 -75.19 -60.39 REMARK 500 4 ASP A 81 138.90 -177.19 REMARK 500 5 HIS A 2 111.35 -164.78 REMARK 500 5 MET A 36 -148.20 -93.62 REMARK 500 5 ASP A 44 -166.58 -79.65 REMARK 500 5 ASN A 53 55.65 -68.11 REMARK 500 5 ASN A 55 -31.46 -179.29 REMARK 500 5 THR A 60 31.87 -94.01 REMARK 500 5 PRO A 80 -73.08 -56.59 REMARK 500 6 MET A 36 -152.06 -94.21 REMARK 500 6 ASP A 44 -165.84 -79.64 REMARK 500 6 ASN A 53 48.50 -67.10 REMARK 500 6 GLU A 54 -60.18 -96.67 REMARK 500 6 ASN A 55 4.95 -157.22 REMARK 500 6 PRO A 80 -73.85 -60.94 REMARK 500 7 MET A 3 35.44 -88.72 REMARK 500 7 LYS A 6 148.33 -170.47 REMARK 500 7 MET A 36 -152.02 -94.87 REMARK 500 7 ASN A 53 23.30 -64.09 REMARK 500 7 ASN A 55 -35.52 179.47 REMARK 500 7 PRO A 80 -72.80 -54.72 REMARK 500 7 ASP A 81 137.75 -175.99 REMARK 500 7 TYR A 94 -60.99 -92.03 REMARK 500 8 HIS A 2 75.75 58.44 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 96 0.07 SIDE CHAIN REMARK 500 7 ARG A 50 0.09 SIDE CHAIN REMARK 500 12 ARG A 50 0.07 SIDE CHAIN REMARK 500 12 ARG A 73 0.08 SIDE CHAIN REMARK 500 13 ARG A 50 0.17 SIDE CHAIN REMARK 500 18 ARG A 50 0.14 SIDE CHAIN REMARK 500 19 ARG A 50 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18086 RELATED DB: BMRB DBREF 2LLZ A 3 100 UNP P0AF61 YJDK_ECOLI 1 98 SEQADV 2LLZ GLY A 1 UNP P0AF61 EXPRESSION TAG SEQADV 2LLZ HIS A 2 UNP P0AF61 EXPRESSION TAG SEQRES 1 A 100 GLY HIS MET GLU GLY LYS ASN LYS PHE ASN THR TYR VAL SEQRES 2 A 100 VAL SER PHE ASP TYR PRO SER SER TYR SER SER VAL PHE SEQRES 3 A 100 LEU ARG LEU ARG SER LEU MET TYR ASP MET ASN PHE SER SEQRES 4 A 100 SER ILE VAL ALA ASP GLU TYR GLY ILE PRO ARG GLN LEU SEQRES 5 A 100 ASN GLU ASN SER PHE ALA ILE THR THR SER LEU ALA ALA SEQRES 6 A 100 SER GLU ILE GLU ASP LEU ILE ARG LEU LYS CYS LEU ASP SEQRES 7 A 100 LEU PRO ASP ILE ASP PHE ASP LEU ASN ILE MET THR VAL SEQRES 8 A 100 ASP ASP TYR PHE ARG GLN PHE TYR LYS HELIX 1 1 PRO A 19 SER A 21 5 3 HELIX 2 2 TYR A 22 MET A 36 1 15 HELIX 3 3 ALA A 64 LYS A 75 1 12 HELIX 4 4 CYS A 76 ASP A 78 5 3 HELIX 5 5 VAL A 91 ARG A 96 1 6 SHEET 1 A 4 PHE A 38 SER A 39 0 SHEET 2 A 4 SER A 56 ILE A 59 -1 O ALA A 58 N SER A 39 SHEET 3 A 4 TYR A 12 ASP A 17 -1 N TYR A 12 O ILE A 59 SHEET 4 A 4 ASP A 85 THR A 90 -1 O MET A 89 N VAL A 13 SHEET 1 B 2 ILE A 41 ALA A 43 0 SHEET 2 B 2 PRO A 49 GLN A 51 -1 O ARG A 50 N VAL A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1