HEADER DNA BINDING PROTEIN 18-NOV-11 2LM1 TITLE SOLUTION NMR STRUCTURE OF LYSINE-SPECIFIC DEMETHYLASE LID FROM TITLE 2 DROSOPHILA MELANOGASTER, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET FR824D COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE LID; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARID DOMAIN RESIDUES 214-320; COMPND 5 SYNONYM: HISTONE DEMETHYLASE LID, JUMONJI/ARID DOMAIN-CONTAINING COMPND 6 PROTEIN LID, PROTEIN LITTLE IMAGINAL DISKS, RETINOBLASTOMA-BINDING COMPND 7 PROTEIN 2 HOMOLOG; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG9088, LID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15NANO6HT_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, CHAPERONE-ENABLED STUDIES KEYWDS 3 OF EPIGENETIC REGULATION ENZYMES, CEBS, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,D.LEE,E.KOHAN,S.SAHDEV,T.B.ACTON,R.XIAO,J.K.EVERETT, AUTHOR 2 T.KUSCH,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG),CHAPERONE-ENABLED STUDIES OF EPIGENETIC REGULATION AUTHOR 4 ENZYMES (CEBS) REVDAT 3 14-JUN-23 2LM1 1 REMARK REVDAT 2 29-AUG-12 2LM1 1 AUTHOR REVDAT 1 21-DEC-11 2LM1 0 JRNL AUTH J.L.MILLS,D.LEE,E.KOHAN,S.SAHDEV,T.B.ACTON,R.XIAO, JRNL AUTH 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET FR824D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 FR824D, 100 MM SODIUM CHLORIDE, REMARK 210 5 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 10 MM TRIS, 95% H2O/5% D2O; 1.3 REMARK 210 MM [U-5% 13C; U-100% 15N] FR824D, REMARK 210 100 MM SODIUM CHLORIDE, 5 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 10 MM REMARK 210 TRIS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HCCH- REMARK 210 COSY; 3D SIMUTANEOUS 13C- REMARK 210 AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; 2D 1H-13C REMARK 210 HSQC; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AUTOSTRUCTURE 2.1, REMARK 210 AUTOASSIGN 2.1, PROSA, CARA, REMARK 210 VNMRJ, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 221 -71.12 -151.61 REMARK 500 1 LEU A 222 -74.87 -102.33 REMARK 500 1 GLU A 223 102.93 59.74 REMARK 500 1 ALA A 224 84.94 -177.76 REMARK 500 1 SER A 246 94.40 -68.59 REMARK 500 1 ILE A 249 79.66 -110.98 REMARK 500 1 LYS A 255 -37.90 81.78 REMARK 500 1 PRO A 291 93.47 -65.33 REMARK 500 1 SER A 292 91.35 -65.22 REMARK 500 1 LYS A 318 71.80 -108.81 REMARK 500 2 ARG A 218 102.41 67.78 REMARK 500 2 ASN A 220 85.44 62.37 REMARK 500 2 GLU A 221 -74.15 -81.53 REMARK 500 2 LEU A 222 -93.41 -85.10 REMARK 500 2 GLU A 223 -35.02 -144.03 REMARK 500 2 SER A 245 -171.10 60.00 REMARK 500 2 GLU A 253 -71.38 -75.45 REMARK 500 2 ARG A 254 -1.72 -163.66 REMARK 500 2 ASP A 258 87.71 -152.03 REMARK 500 2 PRO A 291 -70.39 -52.36 REMARK 500 2 SER A 316 168.96 66.35 REMARK 500 3 ASN A 220 166.95 65.13 REMARK 500 3 GLU A 221 -63.77 -152.69 REMARK 500 3 LEU A 222 -63.97 -94.91 REMARK 500 3 THR A 226 32.30 -82.25 REMARK 500 3 SER A 246 69.14 -118.01 REMARK 500 3 ILE A 249 74.79 -117.25 REMARK 500 3 ALA A 256 -175.70 71.20 REMARK 500 3 ARG A 279 67.80 60.23 REMARK 500 3 SER A 316 52.64 -91.41 REMARK 500 3 VAL A 319 92.20 -66.72 REMARK 500 4 ARG A 215 -56.95 -154.92 REMARK 500 4 LEU A 219 -7.03 69.01 REMARK 500 4 ASN A 220 115.39 -161.17 REMARK 500 4 GLU A 221 -66.90 -98.70 REMARK 500 4 LEU A 222 -77.98 -127.93 REMARK 500 4 LYS A 225 -58.26 -139.63 REMARK 500 4 ILE A 249 78.45 -116.06 REMARK 500 4 PRO A 250 -65.39 -90.19 REMARK 500 4 LYS A 255 -44.08 77.69 REMARK 500 4 LYS A 280 44.66 -91.95 REMARK 500 4 SER A 292 -81.19 74.01 REMARK 500 4 LYS A 294 -84.26 66.22 REMARK 500 4 LYS A 318 99.40 -69.34 REMARK 500 5 GLU A 221 -57.51 -129.17 REMARK 500 5 LEU A 222 -46.89 -135.84 REMARK 500 5 GLU A 223 -92.36 -137.75 REMARK 500 5 ALA A 224 89.82 179.75 REMARK 500 5 LYS A 225 -31.32 -173.72 REMARK 500 5 ARG A 227 -67.15 -120.49 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18095 RELATED DB: BMRB REMARK 900 RELATED ID: FR824D RELATED DB: TARGETDB DBREF 2LM1 A 214 320 UNP Q9VMJ7 KDM5_DROME 214 320 SEQRES 1 A 107 PRO ARG VAL GLN ARG LEU ASN GLU LEU GLU ALA LYS THR SEQRES 2 A 107 ARG VAL LYS LEU ASN PHE LEU ASP GLN ILE ALA LYS PHE SEQRES 3 A 107 TRP GLU LEU GLN GLY SER SER LEU LYS ILE PRO MET VAL SEQRES 4 A 107 GLU ARG LYS ALA LEU ASP LEU TYR THR LEU HIS ARG ILE SEQRES 5 A 107 VAL GLN GLU GLU GLY GLY MET GLU GLN THR THR LYS ASP SEQRES 6 A 107 ARG LYS TRP ALA LYS VAL ALA ASN ARG MET GLN TYR PRO SEQRES 7 A 107 SER SER LYS SER VAL GLY ALA THR LEU LYS ALA HIS TYR SEQRES 8 A 107 GLU ARG ILE LEU HIS PRO PHE GLU VAL TYR THR SER GLY SEQRES 9 A 107 LYS VAL LEU HELIX 1 1 THR A 226 GLU A 241 1 16 HELIX 2 2 ASP A 258 GLY A 270 1 13 HELIX 3 3 GLY A 271 ARG A 279 1 9 HELIX 4 4 LYS A 280 MET A 288 1 9 HELIX 5 5 SER A 293 SER A 316 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1