HEADER ALLERGEN 29-NOV-11 2LM9 TITLE THE NMR STRUCTURE OF A MAJOR ALLERGEN FROM DUST MITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLO T 21 ALLERGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLOMIA TROPICALIS; SOURCE 3 ORGANISM_COMMON: MITE; SOURCE 4 ORGANISM_TAXID: 40697; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-4T-1 KEYWDS DUST MITE, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR K.W.TAN,Y.K.MOK REVDAT 2 14-JUN-23 2LM9 1 REMARK REVDAT 1 22-AUG-12 2LM9 0 JRNL AUTH K.W.TAN,T.C.ONG,Y.F.GAO,Y.S.TIONG,K.N.WONG,F.T.CHEW,Y.K.MOK JRNL TITL NMR STRUCTURE AND IGE EPITOPES OF BLO T 21, A MAJOR DUST JRNL TITL 2 MITE ALLERGEN FROM BLOMIA TROPICALIS JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X JRNL PMID 22887997 JRNL DOI 10.1074/JBC.M112.348730 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CNS REMARK 3 AUTHORS : GODDARD (SPARKY), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102555. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM SODIUM PHOSPHATE-1, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D DQF-COSY; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 48 -18.26 -146.74 REMARK 500 1 THR A 78 -32.68 73.35 REMARK 500 2 ASP A 48 -3.68 -155.70 REMARK 500 2 THR A 78 -5.91 73.81 REMARK 500 2 SER A 112 -46.00 49.85 REMARK 500 3 ASP A 48 12.56 -157.72 REMARK 500 3 THR A 78 -42.74 76.00 REMARK 500 3 ASP A 81 -162.31 -125.46 REMARK 500 4 ASN A 46 73.43 71.60 REMARK 500 4 ASP A 48 -13.76 -146.73 REMARK 500 4 THR A 78 -5.20 75.79 REMARK 500 4 ASP A 79 38.22 -95.42 REMARK 500 5 THR A 78 -37.18 75.34 REMARK 500 5 ASP A 81 -167.63 -121.47 REMARK 500 6 ASP A 48 -9.74 -150.68 REMARK 500 6 THR A 78 -22.65 77.28 REMARK 500 6 LEU A 80 171.22 -55.54 REMARK 500 7 THR A 78 -46.66 75.87 REMARK 500 7 ASP A 81 -161.88 -127.11 REMARK 500 7 SER A 112 -25.98 60.73 REMARK 500 8 ASN A 46 60.90 67.47 REMARK 500 8 ASP A 81 -158.85 -108.76 REMARK 500 9 ASN A 46 -3.90 109.19 REMARK 500 9 THR A 78 -32.59 73.54 REMARK 500 9 ASP A 79 -76.13 -57.91 REMARK 500 9 LEU A 80 171.87 58.38 REMARK 500 10 THR A 78 -38.25 72.53 REMARK 500 11 THR A 44 -67.72 -99.76 REMARK 500 11 THR A 78 -13.20 75.16 REMARK 500 12 THR A 44 -80.97 -108.66 REMARK 500 12 THR A 78 -37.49 72.73 REMARK 500 13 THR A 44 -76.51 -153.25 REMARK 500 13 ASP A 48 -16.19 -150.27 REMARK 500 13 THR A 78 -4.77 77.79 REMARK 500 13 ASP A 81 -162.43 -118.34 REMARK 500 14 THR A 78 -22.01 80.11 REMARK 500 15 THR A 78 -26.17 79.03 REMARK 500 15 ASP A 81 -167.94 -128.22 REMARK 500 15 SER A 112 -26.25 75.30 REMARK 500 16 ASP A 48 -15.45 -152.56 REMARK 500 16 THR A 78 -4.20 73.11 REMARK 500 16 LEU A 80 171.12 -43.39 REMARK 500 17 ASP A 48 -21.13 -156.40 REMARK 500 17 THR A 78 -31.23 77.46 REMARK 500 17 SER A 112 -30.44 72.10 REMARK 500 18 ASP A 48 13.42 -152.10 REMARK 500 18 THR A 78 -33.18 73.33 REMARK 500 19 THR A 78 -38.24 74.11 REMARK 500 20 THR A 78 -17.95 73.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 108 0.08 SIDE CHAIN REMARK 500 5 ARG A 77 0.07 SIDE CHAIN REMARK 500 8 ARG A 77 0.08 SIDE CHAIN REMARK 500 12 ARG A 23 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18107 RELATED DB: BMRB DBREF 2LM9 A 18 113 UNP A7IZF3 A7IZF3_BLOTA 34 129 SEQRES 1 A 96 ASN THR ALA THR GLN ARG PHE HIS GLU ILE GLU LYS PHE SEQRES 2 A 96 LEU LEU HIS ILE THR HIS GLU VAL ASP ASP LEU GLU LYS SEQRES 3 A 96 THR GLY ASN LYS ASP GLU LYS ALA ARG LEU LEU ARG GLU SEQRES 4 A 96 LEU THR VAL SER GLU ALA PHE ILE GLU GLY SER ARG GLY SEQRES 5 A 96 TYR PHE GLN ARG GLU LEU LYS ARG THR ASP LEU ASP LEU SEQRES 6 A 96 LEU GLU LYS PHE ASN PHE GLU ALA ALA LEU ALA THR GLY SEQRES 7 A 96 ASP LEU LEU LEU LYS ASP LEU LYS ALA LEU GLN LYS ARG SEQRES 8 A 96 VAL GLN ASP SER GLU HELIX 1 1 ASN A 18 GLY A 45 1 28 HELIX 2 2 ASP A 48 LEU A 75 1 28 HELIX 3 3 ASP A 81 GLU A 113 1 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1