HEADER TRANSCRIPTION 29-NOV-11 2LMD TITLE MINIMAL CONSTRAINTS SOLUTION NMR STRUCTURE OF PROSPERO HOMEOBOX TITLE 2 PROTEIN 1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET HR4660B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSPERO HOMEOBOX PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 575-737; COMPND 5 SYNONYM: HOMEOBOX PROSPERO-LIKE PROTEIN PROX1, PROX-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PROX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,O.A.LANGE,H.LEE,M.MAGLAQUI,H.JANJUA,C.CICCOSANTI,L.ZHAO, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 18-JUL-12 2LMD 1 JRNL REVDAT 2 27-JUN-12 2LMD 1 JRNL REVDAT 1 21-DEC-11 2LMD 0 JRNL AUTH O.F.LANGE,P.ROSSI,N.G.SGOURAKIS,Y.SONG,H.W.LEE,J.M.ARAMINI, JRNL AUTH 2 A.ERTEKIN,R.XIAO,T.B.ACTON,G.T.MONTELIONE,D.BAKER JRNL TITL DETERMINATION OF SOLUTION STRUCTURES OF PROTEINS UP TO 40 JRNL TITL 2 KDA USING CS-ROSETTA WITH SPARSE NMR DATA FROM DEUTERATED JRNL TITL 3 SAMPLES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10873 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22733734 JRNL DOI 10.1073/PNAS.1203013109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 , GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MD steps: 200 HEAT-1000 HOT 100 COOL, REMARK 3 PARAM 19 timestep 0.004 ns heat, 0.004 ns hot, 0.001 ns cool, 0.3 REMARK 3 weight rdc REMARK 4 REMARK 4 2LMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB102559. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.96 MM [U-100% 13C; U-100% 15N] REMARK 210 HR4660B, 200 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 5 MM CALCIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 20 MM MES, REMARK 210 95% H2O/5% D2O; 0.2 MM [U-13C; U- REMARK 210 15N; U-2H] HR4660B, 200 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, 20 REMARK 210 MM MES, 95% H2O/5% D2O; 0.86 MM REMARK 210 [5% 13C; U-100% 15N] HR4660B, 200 REMARK 210 MM SODIUM CHLORIDE, 10 MM DTT, 5 REMARK 210 MM CALCIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 20 MM MES, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C-13C HSQC_ REMARK 210 NOESY_HSQC; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, NMRPIPE, REMARK 210 TOPSPIN, PINE, SPARKY, TALOS+, REMARK 210 PALES, PSVS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -36.56 78.76 REMARK 500 1 PHE A 30 91.27 -48.42 REMARK 500 1 THR A 32 -83.74 -73.44 REMARK 500 1 PHE A 44 49.08 -102.56 REMARK 500 1 PHE A 49 44.35 82.06 REMARK 500 1 GLU A 88 1.61 -67.01 REMARK 500 1 LEU A 90 -114.59 -116.90 REMARK 500 1 THR A 93 84.71 -52.10 REMARK 500 1 CYS A 96 -64.72 74.52 REMARK 500 1 ALA A 109 23.97 41.35 REMARK 500 1 PHE A 112 -5.49 67.80 REMARK 500 1 VAL A 114 82.94 27.87 REMARK 500 1 ASN A 166 36.31 -89.94 REMARK 500 2 SER A 9 -163.70 -173.90 REMARK 500 2 TYR A 31 -18.98 74.77 REMARK 500 2 ARG A 33 -48.10 -142.48 REMARK 500 2 TYR A 34 -168.40 56.13 REMARK 500 2 PHE A 49 127.36 81.63 REMARK 500 2 SER A 91 111.77 -177.93 REMARK 500 2 THR A 93 100.47 -57.96 REMARK 500 2 ARG A 94 -38.70 161.23 REMARK 500 2 ALA A 109 42.30 -106.31 REMARK 500 2 VAL A 114 103.95 -37.17 REMARK 500 2 SER A 164 110.29 -167.79 REMARK 500 2 PRO A 165 108.45 -45.06 REMARK 500 2 HIS A 173 95.14 -161.98 REMARK 500 3 HIS A 4 99.54 -65.82 REMARK 500 3 HIS A 6 81.76 -68.82 REMARK 500 3 MET A 13 -56.40 -141.29 REMARK 500 3 ASN A 20 -12.11 75.65 REMARK 500 3 PHE A 49 63.79 83.54 REMARK 500 3 GLU A 88 2.31 -68.65 REMARK 500 3 SER A 91 92.15 -176.17 REMARK 500 3 ARG A 94 -0.31 61.34 REMARK 500 3 LYS A 137 -13.36 77.62 REMARK 500 3 ASP A 140 175.45 72.61 REMARK 500 3 PRO A 141 -4.93 -54.45 REMARK 500 3 SER A 164 101.17 -167.10 REMARK 500 3 PRO A 165 77.62 -58.38 REMARK 500 3 ASN A 166 -43.87 177.41 REMARK 500 4 HIS A 3 94.09 -63.69 REMARK 500 4 HIS A 7 95.82 -65.52 REMARK 500 4 ALA A 12 -157.97 -130.37 REMARK 500 4 GLN A 14 -62.74 80.77 REMARK 500 4 SER A 18 -53.12 -160.34 REMARK 500 4 PRO A 19 -70.53 -82.12 REMARK 500 4 PHE A 44 41.35 -103.26 REMARK 500 4 PHE A 49 98.33 -49.52 REMARK 500 4 LEU A 90 -62.27 -91.98 REMARK 500 4 SER A 91 26.25 -170.88 REMARK 500 REMARK 500 THIS ENTRY HAS 368 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 112 GLU A 113 11 149.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18112 RELATED DB: BMRB REMARK 900 RELATED ID: HR4660B RELATED DB: TARGETDB DBREF 2LMD A 12 174 UNP Q92786 PROX1_HUMAN 575 737 SEQADV 2LMD MET A 1 UNP Q92786 EXPRESSION TAG SEQADV 2LMD GLY A 2 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 3 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 4 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 5 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 6 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 7 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 8 UNP Q92786 EXPRESSION TAG SEQADV 2LMD SER A 9 UNP Q92786 EXPRESSION TAG SEQADV 2LMD HIS A 10 UNP Q92786 EXPRESSION TAG SEQADV 2LMD MET A 11 UNP Q92786 EXPRESSION TAG SEQRES 1 A 174 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA MET SEQRES 2 A 174 GLN GLU GLY LEU SER PRO ASN HIS LEU LYS LYS ALA LYS SEQRES 3 A 174 LEU MET PHE PHE TYR THR ARG TYR PRO SER SER ASN MET SEQRES 4 A 174 LEU LYS THR TYR PHE SER ASP VAL LYS PHE ASN ARG CYS SEQRES 5 A 174 ILE THR SER GLN LEU ILE LYS TRP PHE SER ASN PHE ARG SEQRES 6 A 174 GLU PHE TYR TYR ILE GLN MET GLU LYS TYR ALA ARG GLN SEQRES 7 A 174 ALA ILE ASN ASP GLY VAL THR SER THR GLU GLU LEU SER SEQRES 8 A 174 ILE THR ARG ASP CYS GLU LEU TYR ARG ALA LEU ASN MET SEQRES 9 A 174 HIS TYR ASN LYS ALA ASN ASP PHE GLU VAL PRO GLU ARG SEQRES 10 A 174 PHE LEU GLU VAL ALA GLN ILE THR LEU ARG GLU PHE PHE SEQRES 11 A 174 ASN ALA ILE ILE ALA GLY LYS ASP VAL ASP PRO SER TRP SEQRES 12 A 174 LYS LYS ALA ILE TYR LYS VAL ILE CYS LYS LEU ASP SER SEQRES 13 A 174 GLU VAL PRO GLU ILE PHE LYS SER PRO ASN CYS LEU GLN SEQRES 14 A 174 GLU LEU LEU HIS GLU HELIX 1 1 SER A 18 PHE A 30 1 13 HELIX 2 2 PRO A 35 PHE A 44 1 10 HELIX 3 3 ASN A 50 GLY A 83 1 34 HELIX 4 4 SER A 86 LEU A 90 5 5 HELIX 5 5 CYS A 96 ASN A 107 1 12 HELIX 6 6 PRO A 115 GLY A 136 1 22 HELIX 7 7 PRO A 141 LYS A 153 1 13 HELIX 8 8 SER A 164 LEU A 172 5 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1