HEADER DE NOVO PROTEIN 15-DEC-11 2LN3 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, IF3-LIKE FOLD, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR135 (CASD TARGET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PROTEIN OR135; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.KOGA,N.KOGA,R.XIAO,H.LEE,H.JANJUA,E.KOHAN,T.B.ACTON, AUTHOR 2 J.K.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 6 14-JUN-23 2LN3 1 REMARK REVDAT 5 23-JAN-13 2LN3 1 JRNL REVDAT 4 07-NOV-12 2LN3 1 JRNL REVDAT 3 31-OCT-12 2LN3 1 JRNL REVDAT 2 13-JUN-12 2LN3 1 AUTHOR JRNL REVDAT 1 15-FEB-12 2LN3 0 JRNL AUTH N.KOGA,R.TATSUMI-KOGA,G.LIU,R.XIAO,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 2 D.BAKER JRNL TITL PRINCIPLES FOR DESIGNING IDEAL PROTEIN STRUCTURES. JRNL REF NATURE V. 491 222 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23135467 JRNL DOI 10.1038/NATURE11600 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS, AUTOSTRUCTURE, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102585. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.04 MM [U-100% 13C; U-100% 15N] REMARK 210 OR135, 95% H2O/5% D2O; 1.14 MM REMARK 210 [U-5% 13C; U-100% 15N] OR135, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, SPARKY, REMARK 210 TALOS+, REDCAT REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, DISTANCE GEOMETRY, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 81.40 -68.93 REMARK 500 1 ASN A 66 24.91 -162.84 REMARK 500 1 LEU A 76 -75.29 -71.51 REMARK 500 1 GLU A 77 -106.06 -150.19 REMARK 500 2 HIS A 80 97.01 -67.76 REMARK 500 3 GLU A 77 29.26 -78.40 REMARK 500 4 ASN A 66 -43.17 -151.80 REMARK 500 4 HIS A 80 98.09 -66.25 REMARK 500 5 HIS A 79 98.70 -63.57 REMARK 500 5 HIS A 81 24.88 -156.04 REMARK 500 6 SER A 75 -178.77 -171.50 REMARK 500 7 ASN A 66 -27.79 76.57 REMARK 500 8 ASN A 66 -21.46 75.89 REMARK 500 8 HIS A 78 71.02 -150.13 REMARK 500 8 HIS A 79 91.24 -57.84 REMARK 500 10 ASN A 66 22.74 -160.61 REMARK 500 10 GLU A 77 -162.70 -128.99 REMARK 500 11 GLU A 77 50.35 35.21 REMARK 500 12 SER A 75 93.99 70.10 REMARK 500 12 GLU A 77 95.32 -54.58 REMARK 500 12 HIS A 82 20.00 -77.36 REMARK 500 13 ASN A 66 -48.13 -141.22 REMARK 500 14 ASN A 66 27.60 -157.98 REMARK 500 14 SER A 75 88.01 -161.03 REMARK 500 14 LEU A 76 -168.42 -122.04 REMARK 500 14 HIS A 79 107.90 -59.19 REMARK 500 14 HIS A 82 35.32 -93.92 REMARK 500 15 LEU A 3 -168.23 -114.86 REMARK 500 15 HIS A 78 55.97 -92.06 REMARK 500 15 HIS A 79 -85.40 28.52 REMARK 500 16 HIS A 79 90.87 -56.27 REMARK 500 16 HIS A 80 147.87 -175.24 REMARK 500 16 HIS A 81 95.51 -69.05 REMARK 500 17 ASN A 66 -32.63 78.05 REMARK 500 17 HIS A 81 -89.51 -83.38 REMARK 500 18 SER A 75 146.93 -175.16 REMARK 500 18 LEU A 76 -71.57 -114.69 REMARK 500 18 HIS A 78 35.24 -80.82 REMARK 500 18 HIS A 81 86.56 -67.06 REMARK 500 20 HIS A 80 79.20 -68.16 REMARK 500 20 HIS A 81 0.78 170.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18145 RELATED DB: BMRB REMARK 900 RELATED ID: OR135 RELATED DB: TARGETDB DBREF 2LN3 A 1 83 PDB 2LN3 2LN3 1 83 SEQRES 1 A 83 MET GLY LEU THR ARG THR ILE THR SER GLN ASN LYS GLU SEQRES 2 A 83 GLU LEU LEU GLU ILE ALA LEU LYS PHE ILE SER GLN GLY SEQRES 3 A 83 LEU ASP LEU GLU VAL GLU PHE ASP SER THR ASP ASP LYS SEQRES 4 A 83 GLU ILE GLU GLU PHE GLU ARG ASP MET GLU ASP LEU ALA SEQRES 5 A 83 LYS LYS THR GLY VAL GLN ILE GLN LYS GLN TRP GLN GLY SEQRES 6 A 83 ASN LYS LEU ARG ILE ARG LEU LYS GLY SER LEU GLU HIS SEQRES 7 A 83 HIS HIS HIS HIS HIS HELIX 1 1 ASN A 11 GLY A 26 1 16 HELIX 2 2 ASP A 37 GLY A 56 1 20 SHEET 1 A 4 THR A 6 SER A 9 0 SHEET 2 A 4 ASP A 28 PHE A 33 1 O GLU A 32 N ILE A 7 SHEET 3 A 4 LYS A 67 LYS A 73 -1 O LEU A 72 N LEU A 29 SHEET 4 A 4 ILE A 59 GLN A 64 -1 N GLN A 62 O ARG A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1