HEADER HYDROLASE 20-DEC-11 2LNA TITLE SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL INNER MEMBRANE DOMAIN TITLE 2 (RESIDUES 164-251), FTSH_EXT, FROM THE PARAPLEGIN-LIKE PROTEIN AFG3L2 TITLE 3 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 4 HR6741A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFG3-LIKE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 164-251; COMPND 5 SYNONYM: PARAPLEGIN-LIKE PROTEIN; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AFG3L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, MPP, HYDROLASE, KEYWDS 3 MITOCHONDRIAL PROTEIN PARTNERSHIP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,Y.YANG,H.LEE,H.JANUA,E.KOHAN,R.SHASTRY,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG),MITOCHONDRIAL PROTEIN AUTHOR 4 PARTNERSHIP (MPP) REVDAT 4 14-JUN-23 2LNA 1 REMARK SEQADV REVDAT 3 30-OCT-13 2LNA 1 JRNL REVDAT 2 21-MAR-12 2LNA 1 TITLE REVDAT 1 25-JAN-12 2LNA 0 JRNL AUTH T.A.RAMELOT,Y.YANG,I.D.SAHU,H.W.LEE,R.XIAO,G.A.LORIGAN, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE AND MD SIMULATIONS OF THE AAA PROTEASE JRNL TITL 2 INTERMEMBRANE SPACE DOMAIN INDICATES PERIPHERAL MEMBRANE JRNL TITL 3 LOCALIZATION WITHIN THE HEXAOLIGOMER. JRNL REF FEBS LETT. V. 587 3522 2013 JRNL REFN ISSN 0014-5793 JRNL PMID 24055473 JRNL DOI 10.1016/J.FEBSLET.2013.09.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REFINEMENT IN EXPLICIT WATER + TWO REMARK 3 SETS OF NH RDCS REMARK 4 REMARK 4 2LNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102592. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 HR6741A, 200 MM SODIUM CHLORIDE, REMARK 210 20 MM MES, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 10 UM DSS, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM NC5 HR6741A, 200 MM REMARK 210 SODIUM CHLORIDE, 20 MM MES, 5 MM REMARK 210 CALCIUM CHLORIDE, 10 MM DTT, 10 REMARK 210 UM DSS, 0.02 % SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 0.7 MM [U-100% 13C; REMARK 210 U-100% 15N] HR6741A, 200 MM REMARK 210 SODIUM CHLORIDE, 20 MM MES, 5 MM REMARK 210 CALCIUM CHLORIDE, 10 MM DTT, 10 REMARK 210 UM DSS, 0.02 % SODIUM AZIDE, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 1H-13C NOESYALIPH; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-15N HETNOE; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D HBHA(CO) REMARK 210 NH; 4D CC-HMQC-NOESY-HMQC; 3D REMARK 210 CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.1, NMRPIPE 2008 REMARK 210 LINUX9, TOPSPIN 2.1.4 AND 3.1, REMARK 210 VNMRJ, PINE, SPARKY 3.113, TALOS+ REMARK 210 1.2009.0721.18, PALES 2000, REMARK 210 PSVS 1.4, X-PLOR NIH 2.25 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 6 96.22 -66.34 REMARK 500 1 MET A 11 98.80 -62.03 REMARK 500 1 LYS A 12 73.39 -60.43 REMARK 500 1 ARG A 13 -74.70 58.49 REMARK 500 1 SER A 14 -51.04 -163.52 REMARK 500 1 TYR A 27 -64.72 -127.81 REMARK 500 1 LYS A 41 5.43 55.85 REMARK 500 1 PRO A 50 97.16 -50.30 REMARK 500 1 GLN A 58 94.15 66.99 REMARK 500 1 ALA A 95 90.86 -161.04 REMARK 500 2 HIS A 4 -168.42 -75.34 REMARK 500 2 HIS A 5 89.15 -66.71 REMARK 500 2 HIS A 8 102.57 -54.46 REMARK 500 2 HIS A 10 74.43 -153.05 REMARK 500 2 MET A 11 -89.95 56.67 REMARK 500 2 ARG A 13 -64.03 -170.58 REMARK 500 2 SER A 14 -70.14 64.31 REMARK 500 2 TYR A 27 -64.84 -122.13 REMARK 500 2 LYS A 41 17.15 53.70 REMARK 500 3 MET A 11 -19.95 70.18 REMARK 500 3 LYS A 12 74.12 52.03 REMARK 500 3 ARG A 13 31.33 -85.53 REMARK 500 3 SER A 14 93.66 -55.11 REMARK 500 3 ASN A 40 18.61 58.66 REMARK 500 3 ASP A 98 -71.10 66.87 REMARK 500 4 HIS A 3 -93.12 50.99 REMARK 500 4 HIS A 4 103.77 -171.73 REMARK 500 4 HIS A 6 142.81 69.03 REMARK 500 4 ASN A 40 18.45 54.12 REMARK 500 4 LYS A 41 16.04 57.09 REMARK 500 4 GLN A 58 85.33 56.44 REMARK 500 5 HIS A 3 87.51 -62.21 REMARK 500 5 HIS A 6 -178.20 65.29 REMARK 500 5 HIS A 7 -0.71 71.28 REMARK 500 5 SER A 14 -22.08 79.98 REMARK 500 5 TYR A 27 -69.35 -122.75 REMARK 500 5 LYS A 41 -4.44 63.31 REMARK 500 5 PRO A 50 104.50 -54.99 REMARK 500 5 GLU A 96 -78.89 64.31 REMARK 500 6 HIS A 3 15.45 -146.91 REMARK 500 6 HIS A 6 91.88 -68.63 REMARK 500 6 SER A 9 -86.93 41.08 REMARK 500 6 LYS A 12 -70.29 72.73 REMARK 500 6 TYR A 27 -69.95 -126.12 REMARK 500 6 LYS A 41 -3.02 65.64 REMARK 500 6 PRO A 54 153.14 -49.98 REMARK 500 6 GLU A 96 99.22 -67.85 REMARK 500 6 SER A 97 46.15 -146.18 REMARK 500 7 HIS A 8 -30.24 -164.86 REMARK 500 7 HIS A 10 46.59 -142.99 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18156 RELATED DB: BMRB REMARK 900 RELATED ID: HR6741A RELATED DB: TARGETDB DBREF 2LNA A 12 99 UNP Q9Y4W6 AFG32_HUMAN 164 251 SEQADV 2LNA MET A 1 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA GLY A 2 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 3 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 4 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 5 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 6 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 7 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 8 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA SER A 9 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA HIS A 10 UNP Q9Y4W6 EXPRESSION TAG SEQADV 2LNA MET A 11 UNP Q9Y4W6 EXPRESSION TAG SEQRES 1 A 99 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET LYS ARG SEQRES 2 A 99 SER GLY ARG GLU ILE THR TRP LYS ASP PHE VAL ASN ASN SEQRES 3 A 99 TYR LEU SER LYS GLY VAL VAL ASP ARG LEU GLU VAL VAL SEQRES 4 A 99 ASN LYS ARG PHE VAL ARG VAL THR PHE THR PRO GLY LYS SEQRES 5 A 99 THR PRO VAL ASP GLY GLN TYR VAL TRP PHE ASN ILE GLY SEQRES 6 A 99 SER VAL ASP THR PHE GLU ARG ASN LEU GLU THR LEU GLN SEQRES 7 A 99 GLN GLU LEU GLY ILE GLU GLY GLU ASN ARG VAL PRO VAL SEQRES 8 A 99 VAL TYR ILE ALA GLU SER ASP GLY HELIX 1 1 THR A 19 TYR A 27 1 9 HELIX 2 2 LEU A 28 GLY A 31 5 4 HELIX 3 3 SER A 66 LEU A 81 1 16 SHEET 1 A 5 ARG A 16 GLU A 17 0 SHEET 2 A 5 VAL A 60 ASN A 63 1 O TRP A 61 N ARG A 16 SHEET 3 A 5 PHE A 43 PHE A 48 -1 N VAL A 44 O PHE A 62 SHEET 4 A 5 VAL A 33 VAL A 39 -1 N GLU A 37 O ARG A 45 SHEET 5 A 5 VAL A 91 TYR A 93 1 O VAL A 92 N VAL A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1