HEADER IMMUNE SYSTEM 20-DEC-11 2LNB TITLE SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN (6-74) OF HUMAN ZBP1 TITLE 2 PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR8174A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: Z-DNA-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DRADA 1 REPEAT REGION, RESIDUES 6-74; COMPND 5 SYNONYM: TUMOR STROMA AND ACTIVATED MACROPHAGE PROTEIN DLM-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C20ORF183, DLM1, ZBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15 KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,K.HAMILTON,E.KOHAN,D.WANG,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2LNB 1 REMARK SEQADV REVDAT 1 18-JAN-12 2LNB 0 JRNL AUTH Y.YANG,T.A.RAMELOT,K.HAMILTON,E.KOHAN,D.WANG,T.B.ACTON, JRNL AUTH 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN (6-74) OF HUMAN JRNL TITL 2 ZBP1 PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET HR8174A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102593. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 N-TERMINAL DOMAIN (6-74) OF REMARK 210 HUMAN ZBP1 PROTEIN, 20 MM MES, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 1.00 MM [U-5% 13C; U-100% REMARK 210 15N] N-TERMINAL DOMAIN (6-74) OF REMARK 210 HUMAN ZBP1 PROTEIN, 20 MM MES, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D 1H-13C AROM REMARK 210 NOESY; 2D 1H-15N HSQC NH2 ONLY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NUS-NOESY REMARK 210 ALIPHATIC; 3D HN(CO)CA; 3D C(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D HCCH-COSY; REMARK 210 3D HCCH-TOCSY; 3D CCH-TOCSY; 4D REMARK 210 CC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 TOPSPIN, VNMRJ, PINE, SPARKY, REMARK 210 TALOS+, PALES, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 7 -157.71 -98.71 REMARK 500 1 HIS A 8 30.06 -91.74 REMARK 500 1 SER A 9 82.59 60.13 REMARK 500 1 PRO A 69 -68.57 -26.18 REMARK 500 1 THR A 77 -160.48 -162.11 REMARK 500 1 PRO A 79 98.66 -64.65 REMARK 500 2 HIS A 3 162.29 69.29 REMARK 500 2 HIS A 6 104.62 -162.04 REMARK 500 2 HIS A 7 92.32 -61.03 REMARK 500 2 HIS A 8 -80.38 56.13 REMARK 500 2 SER A 9 2.00 -153.18 REMARK 500 2 THR A 77 13.07 -154.76 REMARK 500 2 ASP A 78 85.12 62.49 REMARK 500 3 HIS A 6 50.97 -153.40 REMARK 500 3 SER A 9 22.26 -79.20 REMARK 500 3 ALA A 12 94.57 -65.53 REMARK 500 3 ASP A 13 116.07 65.87 REMARK 500 3 PRO A 14 32.91 -72.50 REMARK 500 4 HIS A 3 147.26 70.04 REMARK 500 4 HIS A 7 -152.53 -143.66 REMARK 500 4 HIS A 8 -87.31 68.32 REMARK 500 4 ALA A 12 175.50 65.06 REMARK 500 4 ASP A 13 132.39 70.54 REMARK 500 4 PRO A 69 -63.48 -20.37 REMARK 500 4 PRO A 79 -158.68 -88.40 REMARK 500 5 HIS A 5 -1.93 58.25 REMARK 500 5 HIS A 8 41.56 -164.97 REMARK 500 5 ALA A 12 89.19 -162.25 REMARK 500 5 ASP A 13 81.61 -157.41 REMARK 500 5 PRO A 69 -59.51 -26.84 REMARK 500 5 THR A 77 97.02 -66.16 REMARK 500 5 ASP A 78 78.24 64.82 REMARK 500 6 HIS A 10 -77.25 -85.03 REMARK 500 6 MET A 11 -73.63 -147.45 REMARK 500 6 ASP A 13 168.96 69.32 REMARK 500 6 PRO A 14 11.75 -69.55 REMARK 500 6 ASP A 78 73.51 51.50 REMARK 500 7 HIS A 6 98.71 -63.46 REMARK 500 7 SER A 9 96.80 -66.97 REMARK 500 7 ALA A 12 97.19 -64.82 REMARK 500 8 HIS A 8 97.21 -57.38 REMARK 500 8 SER A 9 119.29 -164.05 REMARK 500 8 HIS A 10 98.27 -62.26 REMARK 500 8 MET A 11 -83.76 60.75 REMARK 500 8 ALA A 12 19.98 57.14 REMARK 500 8 PRO A 69 106.49 -43.32 REMARK 500 8 THR A 77 100.79 -56.89 REMARK 500 8 PRO A 79 44.46 -78.43 REMARK 500 9 MET A 11 -70.92 66.38 REMARK 500 9 PRO A 14 80.45 -64.67 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18158 RELATED DB: BMRB REMARK 900 RELATED ID: HR8174A RELATED DB: TARGETDB DBREF 2LNB A 12 80 UNP Q9H171 ZBP1_HUMAN 6 74 SEQADV 2LNB MET A 1 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB GLY A 2 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 3 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 4 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 5 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 6 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 7 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 8 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB SER A 9 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB HIS A 10 UNP Q9H171 EXPRESSION TAG SEQADV 2LNB MET A 11 UNP Q9H171 EXPRESSION TAG SEQRES 1 A 80 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA ASP SEQRES 2 A 80 PRO GLY ARG GLU GLY HIS LEU GLU GLN ARG ILE LEU GLN SEQRES 3 A 80 VAL LEU THR GLU ALA GLY SER PRO VAL LYS LEU ALA GLN SEQRES 4 A 80 LEU VAL LYS GLU CYS GLN ALA PRO LYS ARG GLU LEU ASN SEQRES 5 A 80 GLN VAL LEU TYR ARG MET LYS LYS GLU LEU LYS VAL SER SEQRES 6 A 80 LEU THR SER PRO ALA THR TRP CYS LEU GLY GLY THR ASP SEQRES 7 A 80 PRO GLU HELIX 1 1 GLY A 2 HIS A 6 5 5 HELIX 2 2 GLY A 15 GLY A 32 1 18 HELIX 3 3 LEU A 37 GLN A 45 1 9 HELIX 4 4 PRO A 47 GLU A 61 1 15 SHEET 1 A 3 VAL A 35 LYS A 36 0 SHEET 2 A 3 THR A 71 LEU A 74 -1 O TRP A 72 N VAL A 35 SHEET 3 A 3 VAL A 64 SER A 68 -1 N SER A 68 O THR A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1