HEADER TRANSCRIPTION 10-JAN-12 2LO3 TITLE SOLUTION STRUCTURE OF SGF73(59-102) ZINC FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAGA-ASSOCIATED FACTOR 73; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 59-102; COMPND 5 SYNONYM: 73 KDA SAGA-ASSOCIATED FACTOR, SAGA HISTONE COMPND 6 ACETYLTRANSFERASE COMPLEX 73 KDA SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SGF73, YGL066W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX4T1 KEYWDS ZINC-FINGER, DEUBIQUITINATION, TRANSCRIPTION FACTOR, SAGA COMPLEX, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.GAO,C.KOEHLER,J.BONNET,D.DEVYS,B.KIEFFER REVDAT 2 14-JUN-23 2LO3 1 REMARK LINK REVDAT 1 25-JAN-12 2LO3 0 JRNL AUTH C.KOEHLER,X.GAO,J.BONNET,D.DEVYS,B.KIEFFER JRNL TITL INSIGHTS INTO THE ROLE OF SGF11 AND SGF73 FOR THE JRNL TITL 2 INTERACTION BETWEEN SAGA AND NUCLEOSOMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD SCRIPTS REMARK 4 REMARK 4 2LO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102621. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.175 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-98% 15N] SGF73, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 MM TCEP, 10 % D2O, REMARK 210 90% H2O/10% D2O; 1 MM [U-99% REMARK 210 13C; U-98% 15N] SGF73, 20 MM REMARK 210 SODIUM PHOSPHATE, 75 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 10 % D2O, 90% REMARK 210 H2O/10% D2O; 0.2 MM [U-98% 15N] REMARK 210 SGF73, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.05 MM REMARK 210 TCEP, 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D HNCACO; REMARK 210 3D HN(CO)CA; 2D 1H-15N HSQC R1 REMARK 210 EDITED; 2D 1H-15N HSQC R2 EDITED; REMARK 210 2D 1H-15N HETERONUCLEAR NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA, TALOS, REMARK 210 SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 12 51.63 -104.80 REMARK 500 3 ALA A 4 -164.38 -104.88 REMARK 500 4 ASN A 3 -66.82 -103.70 REMARK 500 4 ALA A 4 -48.67 -160.56 REMARK 500 4 ASP A 12 -61.63 66.62 REMARK 500 5 PRO A 2 48.92 -92.83 REMARK 500 5 ASN A 3 -60.12 74.74 REMARK 500 5 ALA A 4 -70.98 -144.61 REMARK 500 6 ASP A 12 134.59 162.79 REMARK 500 10 PRO A 2 88.63 -68.55 REMARK 500 11 ALA A 4 -42.98 -145.90 REMARK 500 11 ASP A 12 -167.91 -115.24 REMARK 500 13 ASP A 12 -51.26 69.60 REMARK 500 16 ASN A 3 174.32 72.92 REMARK 500 16 ALA A 43 106.25 -55.26 REMARK 500 18 ALA A 4 145.83 69.72 REMARK 500 20 ALA A 4 95.66 53.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 18 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 23 SG 109.6 REMARK 620 3 HIS A 35 NE2 110.8 110.6 REMARK 620 4 HIS A 39 ND1 109.9 110.2 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18192 RELATED DB: BMRB REMARK 900 RELATED ID: 2LO2 RELATED DB: PDB DBREF 2LO3 A 1 44 UNP P53165 SGF73_YEAST 59 102 SEQRES 1 A 44 ASN PRO ASN ALA GLN LEU ILE GLU ASP PRO LEU ASP LYS SEQRES 2 A 44 PRO ILE GLN TYR ARG VAL CYS GLU LYS CYS GLY LYS PRO SEQRES 3 A 44 LEU ALA LEU THR ALA ILE VAL ASP HIS LEU GLU ASN HIS SEQRES 4 A 44 CYS ALA GLY ALA SER HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ALA A 31 HIS A 39 1 9 SHEET 1 A 2 TYR A 17 VAL A 19 0 SHEET 2 A 2 PRO A 26 ALA A 28 -1 O LEU A 27 N ARG A 18 LINK SG CYS A 20 ZN ZN A 101 1555 1555 2.35 LINK SG CYS A 23 ZN ZN A 101 1555 1555 2.33 LINK NE2 HIS A 35 ZN ZN A 101 1555 1555 2.09 LINK ND1 HIS A 39 ZN ZN A 101 1555 1555 2.10 SITE 1 AC1 4 CYS A 20 CYS A 23 HIS A 35 HIS A 39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1