HEADER PROTEIN TRANSPORT 12-JAN-12 2LO4 TITLE NMR SOLUTION STRUCTURE OF OPTINEURIN ZINC-FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPTINEURIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: E3-14.7K-INTERACTING PROTEIN, FIP-2, HUNTINGTIN YEAST COMPND 5 PARTNER L, HUNTINGTIN-INTERACTING PROTEIN 7, HIP-7, HUNTINGTIN- COMPND 6 INTERACTING PROTEIN L, NEMO-RELATED PROTEIN, OPTIC NEUROPATHY- COMPND 7 INDUCING PROTEIN, TRANSCRIPTION FACTOR IIIA-INTERACTING PROTEIN, COMPND 8 TFIIIA-INTP; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OPTN, FIP2, GLC1E, HIP7, HYPL, NRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS ZINC-FINGER, NEMO, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.C.WILSON,J.WOLFSBERGER,P.D.TWIGG REVDAT 2 14-JUN-23 2LO4 1 REMARK SEQADV LINK REVDAT 1 23-JAN-13 2LO4 0 JRNL AUTH R.C.WILSON,T.H.CAUDLE,J.WOLFSBERGER,P.D.TWIGG JRNL TITL NMR SOLUTION STRUCTURE OF OPTINEURIN ZINC-FINGER DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA, X-PLOR REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LINGE, O'DONOGHUE AND NILGES (ARIA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA-DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING REMARK 4 REMARK 4 2LO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102622. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 OPTN550, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 0.12 MM REMARK 210 DSS, 90 % H2O, 10 % D2O, 0.9 % REMARK 210 SODIUM AZIDE, 100 UM ZNSO4, 90% REMARK 210 H2O/10% D2O; 1.1 MM [U-100% 15N] REMARK 210 OPTN550, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 0.12 MM REMARK 210 DSS, 90 % H2O, 10 % D2O, 0.9 % REMARK 210 SODIUM AZIDE, 100 UM ZNSO4, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D HCCH-TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA, X-PLOR, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 29 H GLY A 33 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 32 32.11 -144.64 REMARK 500 1 GLU A 34 -37.96 153.49 REMARK 500 1 LEU A 36 72.12 -172.26 REMARK 500 1 ASP A 38 -77.66 -88.02 REMARK 500 1 ILE A 39 -77.86 -156.05 REMARK 500 2 GLU A 34 -45.50 -163.63 REMARK 500 2 PRO A 37 -99.26 -76.33 REMARK 500 2 ASP A 38 -54.70 -143.38 REMARK 500 2 ILE A 39 -24.94 -143.01 REMARK 500 2 ASP A 40 -83.85 -73.78 REMARK 500 3 GLU A 34 -40.60 -168.79 REMARK 500 3 PRO A 37 -128.34 -36.95 REMARK 500 3 ASP A 38 -39.71 -142.01 REMARK 500 3 ILE A 39 -20.04 -146.68 REMARK 500 3 ASP A 40 -74.84 -71.03 REMARK 500 4 GLU A 34 -49.80 -173.11 REMARK 500 4 PRO A 37 -120.01 -42.56 REMARK 500 4 ASP A 38 -47.88 -141.57 REMARK 500 4 ILE A 39 -17.79 -144.31 REMARK 500 4 ASP A 40 -81.37 -73.74 REMARK 500 5 GLU A 34 -50.59 -153.41 REMARK 500 5 PRO A 37 -126.59 -44.45 REMARK 500 5 ASP A 38 -59.69 -139.87 REMARK 500 5 ILE A 39 -35.42 -145.66 REMARK 500 5 ASP A 40 -81.94 -66.28 REMARK 500 6 PRO A 25 123.91 -29.72 REMARK 500 6 GLU A 34 -46.33 -148.26 REMARK 500 6 PRO A 37 -137.38 -37.98 REMARK 500 6 ASP A 38 -57.38 -139.29 REMARK 500 6 ILE A 39 -34.28 -145.04 REMARK 500 6 ASP A 40 -75.41 -71.39 REMARK 500 7 GLU A 34 -46.46 -155.49 REMARK 500 7 ASP A 38 35.10 -142.61 REMARK 500 7 ILE A 39 -37.92 -9.40 REMARK 500 8 PRO A 30 -29.99 -37.02 REMARK 500 8 CYS A 32 14.37 -149.85 REMARK 500 8 GLU A 34 -52.29 -155.67 REMARK 500 8 PRO A 37 -134.60 -22.97 REMARK 500 8 ASP A 38 -59.19 -143.31 REMARK 500 8 ILE A 39 -41.58 -144.32 REMARK 500 8 ASP A 40 -74.26 -71.71 REMARK 500 9 GLU A 34 -53.66 -154.39 REMARK 500 9 PRO A 37 -150.17 -47.16 REMARK 500 9 ASP A 38 -71.63 -143.25 REMARK 500 9 ILE A 39 -62.70 -27.81 REMARK 500 10 PRO A 25 140.97 -34.45 REMARK 500 10 PRO A 30 -73.68 -83.41 REMARK 500 10 GLU A 34 -47.63 -174.12 REMARK 500 10 LEU A 36 73.41 -115.73 REMARK 500 10 ASP A 38 -77.91 -85.45 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 CYS A 32 SG 109.6 REMARK 620 3 HIS A 45 NE2 111.1 109.5 REMARK 620 4 CYS A 49 SG 107.3 109.3 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JVX RELATED DB: PDB REMARK 900 RELATED ID: 18195 RELATED DB: BMRB DBREF 2LO4 A 24 51 UNP Q96CV9 OPTN_HUMAN 550 577 SEQADV 2LO4 MET A 1 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 GLY A 2 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 3 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 4 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 5 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 6 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 7 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 8 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 9 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 10 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 11 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 12 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 GLY A 13 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 LEU A 14 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 VAL A 15 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 PRO A 16 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 ARG A 17 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 GLY A 18 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 19 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 HIS A 20 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 MET A 21 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 ALA A 22 UNP Q96CV9 EXPRESSION TAG SEQADV 2LO4 SER A 23 UNP Q96CV9 EXPRESSION TAG SEQRES 1 A 51 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 51 LEU VAL PRO ARG GLY SER HIS MET ALA SER ILE PRO ILE SEQRES 3 A 51 HIS SER CYS PRO LYS CYS GLY GLU VAL LEU PRO ASP ILE SEQRES 4 A 51 ASP THR LEU GLN ILE HIS VAL MET ASP CYS ILE ILE HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ILE A 39 CYS A 49 1 11 LINK SG CYS A 29 ZN ZN A 300 1555 1555 2.30 LINK SG CYS A 32 ZN ZN A 300 1555 1555 2.30 LINK NE2 HIS A 45 ZN ZN A 300 1555 1555 2.12 LINK SG CYS A 49 ZN ZN A 300 1555 1555 2.28 SITE 1 AC1 4 CYS A 29 CYS A 32 HIS A 45 CYS A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1