HEADER TRANSCRIPTION/CELL CYCLE 29-JAN-12 2LP0 TITLE THE SOLUTION STRUCTURE OF HOMEODOMAIN-PROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-C9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 192-251; COMPND 5 SYNONYM: HOMEOBOX PROTEIN HOX-3B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GEMININ; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 171-190; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOXC9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: GMNN; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET32 KEYWDS HOMEODOMAIN, TRANSCRIPTION-CELL CYCLE COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.LIU,B.ZHOU,Z.XU,G.ZHU REVDAT 3 15-MAY-24 2LP0 1 REMARK REVDAT 2 14-JUN-23 2LP0 1 REMARK REVDAT 1 06-JUN-12 2LP0 0 JRNL AUTH B.ZHOU,C.LIU,Z.XU,G.ZHU JRNL TITL STRUCTURAL BASIS FOR HOMEODOMAIN RECOGNITION BY THE JRNL TITL 2 CELL-CYCLE REGULATOR GEMININ JRNL REF PROC.NATL.ACAD.SCI.USA 2012 JRNL REFN ESSN 1091-6490 JRNL PMID 22615398 JRNL DOI 10.1073/PNAS.1200874109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS, HADDOCK, CYANA REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), ALEXANDRE BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102653. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 HOX-C9-1, 1.0 MM GEMININ-2, 25 REMARK 210 MM POTASSIUM PHOSPHATE-3, 100 MM REMARK 210 SODIUM CHLORIDE-4, 5 MM DTT-5, REMARK 210 90% H2O/10% D2O; 1.0 MM HOX-C9-6, REMARK 210 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 GEMININ-7, 25 MM POTASSIUM REMARK 210 PHOSPHATE-8, 100 MM SODIUM REMARK 210 CHLORIDE-9, 5 MM DTT-10, 90% H2O/ REMARK 210 10% D2O; 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] HOX-C9-11, 1.0 MM REMARK 210 GEMININ-12, 25 MM POTASSIUM REMARK 210 PHOSPHATE-13, 100 MM SODIUM REMARK 210 CHLORIDE-14, 5 MM DTT-15, 100% REMARK 210 D2O; 1.0 MM HOX-C9-16, 0.8 MM [U- REMARK 210 100% 13C; U-100% 15N] GEMININ-17, REMARK 210 25 MM POTASSIUM PHOSPHATE-18, REMARK 210 100 MM SODIUM CHLORIDE-19, 5 MM REMARK 210 DTT-20, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 13C-FILTERED 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA, REMARK 210 PROCHECKNMR, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 20 OE1 GLU B 179 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 20 -86.76 69.47 REMARK 500 1 PHE B 174 -80.68 -81.20 REMARK 500 1 ASP B 175 -107.37 36.79 REMARK 500 1 SER B 176 149.09 165.78 REMARK 500 1 SER B 184 12.19 -144.17 REMARK 500 2 ARG A 18 129.03 70.81 REMARK 500 2 LYS A 19 92.08 -68.75 REMARK 500 2 LEU A 54 -93.53 -97.90 REMARK 500 2 ASN A 55 43.77 -176.32 REMARK 500 2 MET A 75 92.00 -161.23 REMARK 500 2 PHE B 174 -63.13 -145.27 REMARK 500 3 LYS A 19 -45.70 72.83 REMARK 500 3 LYS A 20 -149.73 -77.12 REMARK 500 3 LEU A 54 -91.33 -94.13 REMARK 500 3 ASN A 55 33.30 -179.44 REMARK 500 3 LYS A 74 -73.21 -87.82 REMARK 500 3 MET A 75 46.45 -80.87 REMARK 500 3 PHE B 174 -60.96 -108.35 REMARK 500 3 ASP B 175 9.21 -156.23 REMARK 500 3 SER B 176 28.13 -142.29 REMARK 500 3 GLU B 178 24.21 -157.09 REMARK 500 3 VAL B 181 73.24 -113.08 REMARK 500 3 SER B 184 49.80 -81.59 REMARK 500 3 VAL B 186 50.14 -94.02 REMARK 500 3 SER B 189 -26.23 -174.28 REMARK 500 4 LYS A 20 171.25 67.62 REMARK 500 4 LEU A 54 -92.04 -91.37 REMARK 500 4 ASN A 55 29.80 177.65 REMARK 500 4 LYS A 74 -70.90 -70.40 REMARK 500 4 VAL B 181 67.46 -100.10 REMARK 500 4 LEU B 185 -33.60 -166.08 REMARK 500 4 VAL B 186 69.23 -100.57 REMARK 500 4 ASP B 188 64.32 62.99 REMARK 500 4 SER B 189 -4.54 -142.48 REMARK 500 5 LYS A 19 -68.07 73.16 REMARK 500 5 LYS A 20 -155.15 57.16 REMARK 500 5 GLU B 177 -72.44 -91.24 REMARK 500 5 ASP B 183 134.59 65.52 REMARK 500 5 LEU B 185 -86.26 -101.50 REMARK 500 5 SER B 189 -37.36 -146.60 REMARK 500 6 LYS A 19 -73.40 -131.91 REMARK 500 6 PRO A 23 99.81 -69.47 REMARK 500 6 MET A 75 38.59 -83.39 REMARK 500 6 GLN B 172 95.04 63.60 REMARK 500 6 GLU B 173 -91.27 65.97 REMARK 500 6 PHE B 174 -71.62 -154.17 REMARK 500 6 SER B 176 85.30 -67.55 REMARK 500 6 GLU B 177 31.90 -148.16 REMARK 500 6 THR B 180 -50.21 -129.75 REMARK 500 6 SER B 184 -154.60 -110.38 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17407 RELATED DB: BMRB DBREF 2LP0 A 17 76 UNP P31274 HXC9_HUMAN 192 251 DBREF 2LP0 B 171 190 UNP O75496 GEMI_HUMAN 171 190 SEQRES 1 A 60 THR ARG LYS LYS ARG CYS PRO TYR THR LYS TYR GLN THR SEQRES 2 A 60 LEU GLU LEU GLU LYS GLU PHE LEU PHE ASN MET TYR LEU SEQRES 3 A 60 THR ARG ASP ARG ARG TYR GLU VAL ALA ARG VAL LEU ASN SEQRES 4 A 60 LEU THR GLU ARG GLN VAL LYS ILE TRP PHE GLN ASN ARG SEQRES 5 A 60 ARG MET LYS MET LYS LYS MET ASN SEQRES 1 B 20 ASN GLN GLU PHE ASP SER GLU GLU GLU THR VAL GLU ASP SEQRES 2 B 20 SER LEU VAL GLU ASP SER GLU HELIX 1 1 THR A 25 ASN A 39 1 15 HELIX 2 2 THR A 43 LEU A 54 1 12 HELIX 3 3 THR A 57 LYS A 74 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1