HEADER TRANSFERASE 06-FEB-12 2LP5 TITLE NATIVE STRUCTURE OF THE FYN SH3 A39V/N53P/V55L COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN RESIDUES 85-142; COMPND 5 SYNONYM: PROTO-ONCOGENE C-FYN, P59-FYN; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS AMYLOID FIBRIL, PROTEIN FOLDING INTERMEDIATE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.NEUDECKER,P.ROBUSTELLI,A.CAVALLI,M.VENDRUSCOLO,L.E.KAY REVDAT 2 14-JUN-23 2LP5 1 REMARK SEQADV REVDAT 1 16-MAY-12 2LP5 0 JRNL AUTH P.NEUDECKER,P.ROBUSTELLI,A.CAVALLI,P.WALSH,P.LUNDSTROM, JRNL AUTH 2 A.ZARRINE-AFSAR,S.SHARPE,M.VENDRUSCOLO,L.E.KAY JRNL TITL STRUCTURE OF AN INTERMEDIATE STATE IN PROTEIN FOLDING AND JRNL TITL 2 AGGREGATION. JRNL REF SCIENCE V. 336 362 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22517863 JRNL DOI 10.1126/SCIENCE.1214203 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 3.0 REV 2007.068.09.07, ALMOST 2.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CAVALLI (ALMOST) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE MOLECULAR DYNAMICS REMARK 3 SIMULATED ANNEALING REFINEMENT OF AN INITIAL MODEL BASED ON THE REMARK 3 CRYSTAL STRUCTURE OF THE FYN SH3 DOMAIN MUTANT N53I/V55L (PDB REMARK 3 3CQT) WITH NOE DISTANCE, CHEMICAL SHIFT DERIVED BACKBONE TORSION REMARK 3 DIHEDRAL, AND RDC RESTRAINTS REMARK 4 REMARK 4 2LP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102658. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-15N] FYN SH3 REMARK 210 A39V/N53P/V55L, 0.2 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 1.0 MM [U-15N; U-2H] FYN REMARK 210 SH3 A39V/N53P/V55L, 0.2 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 0.8 MM [U-15N; U-2H] FYN REMARK 210 SH3 A39V/N53P/V55L, 0.2 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 24 MG/ML REMARK 210 PF1 PHAGE, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-15N; U-2H] FYN SH3 A39V/ REMARK 210 N53P/V55L, 0.2 MM EDTA, 0.05 % REMARK 210 SODIUM AZIDE, 50 MM POTASSIUM REMARK 210 PHOSPHATE, UNCERTAIN V/V PEG/ REMARK 210 HEXANOL, 90% H2O/10% D2O; 1.2 MM REMARK 210 [U-13C; U-15N; U-2H] FYN SH3 REMARK 210 A39V/N53P/V55L, 0.2 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 0.8 MM [U-13C; U-15N; U-2H] REMARK 210 FYN SH3 A39V/N53P/V55L, 0.2 MM REMARK 210 EDTA, 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 36 MG/ML REMARK 210 PF1 PHAGE, 90% H2O/10% D2O; 1.0 REMARK 210 MM [U-13C; U-15N; U-50% 2H] FYN REMARK 210 SH3 A39V/N53P/V55L, 0.2 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 1.0 MM [U-13C; U-15N; U-50% REMARK 210 2H] FYN SH3 A39V/N53P/V55L, 0.2 REMARK 210 MM EDTA, 0.05 % SODIUM AZIDE, 50 REMARK 210 MM POTASSIUM PHOSPHATE, 100% D2O; REMARK 210 1.0 MM [2'-13C GLUCOSE; U-15N] REMARK 210 FYN SH3 A39V/N53P/V55L, 0.2 MM REMARK 210 EDTA, 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 100% D2O; REMARK 210 1.0 MM [1'-13C GLUCOSE; U-15N] REMARK 210 FYN SH3 A39V/N53P/V55L, 0.2 MM REMARK 210 EDTA, 0.05 % SODIUM AZIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 1.2 MM [1'-13C GLUCOSE; U- REMARK 210 15N] FYN SH3 A39V/N53P/V55L, 0.2 REMARK 210 MM EDTA, 0.05 % SODIUM AZIDE, 50 REMARK 210 MM POTASSIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY REMARK 210 -HSQC; 3D HNCO; 3D HNCA; 3D C(CO) REMARK 210 NH; 2D 1H-13C CTHSQC; 2D 1H-13C REMARK 210 HSQC; 15N SQ CPMG; 15N TROSY/ REMARK 210 ANTITROSY CPMG; 1HN SQ CPMG; REMARK 210 13CO SQ CPMG; 13CA SQ CPMG; 1HA REMARK 210 SQ CPMG; 13CH3 SQ CPMG REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEWJ 8.0.RC4, MUNIN 1.0, REMARK 210 CATIA 0.52P, ALMOST 2.0, TALOS+ REMARK 210 1.01F REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE CPMG NMR RELAXATION DISPERSION EXPERIMENTS WERE REMARK 210 SUPPLEMENTED WITH SIGN DETERMINATION EXPERIMENTS AS APPROPRIATE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 MET A -3 REMARK 465 VAL A -2 REMARK 465 GLN A -1 REMARK 465 ILE A 0 REMARK 465 ARG A 60 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHF RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FYN SH3 DOMAIN FROM H. SAPIENS REMARK 900 RELATED ID: 3CQT RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FYN SH3 DOMAIN MUTANT N53I/V55L FROM G. REMARK 900 GALLUS REMARK 900 RELATED ID: 2L2P RELATED DB: PDB REMARK 900 STRUCTURE OF A FOLDING INTERMEDIATE OF THE FYN SH3 DOMAIN MUTANT REMARK 900 A39V/N53P/V55L FROM G. GALLUS REMARK 900 RELATED ID: 17149 RELATED DB: BMRB REMARK 900 SEQUENCE-SPECIFIC 1H, 13C, 15N NMR RESONANCE ASSIGNMENTS FOR THE REMARK 900 NATIVE STATE AND A FOLDING INTERMEDIATE OF THE FYN SH3 DOMAIN REMARK 900 MUTANT A39V/N53P/V55L FROM G. GALLUS DBREF 2LP5 A 2 59 UNP Q05876 FYN_CHICK 85 142 SEQADV 2LP5 GLY A -5 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 ALA A -4 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 MET A -3 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 VAL A -2 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 GLN A -1 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 ILE A 0 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 SER A 1 UNP Q05876 EXPRESSION TAG SEQADV 2LP5 VAL A 39 UNP Q05876 ALA 122 ENGINEERED MUTATION SEQADV 2LP5 PRO A 53 UNP Q05876 ASN 136 ENGINEERED MUTATION SEQADV 2LP5 LEU A 55 UNP Q05876 VAL 138 ENGINEERED MUTATION SEQADV 2LP5 ARG A 60 UNP Q05876 EXPRESSION TAG SEQRES 1 A 66 GLY ALA MET VAL GLN ILE SER THR LEU PHE GLU ALA LEU SEQRES 2 A 66 TYR ASP TYR GLU ALA ARG THR GLU ASP ASP LEU SER PHE SEQRES 3 A 66 HIS LYS GLY GLU LYS PHE GLN ILE LEU ASN SER SER GLU SEQRES 4 A 66 GLY ASP TRP TRP GLU VAL ARG SER LEU THR THR GLY GLU SEQRES 5 A 66 THR GLY TYR ILE PRO SER PRO TYR LEU ALA PRO VAL ASP SEQRES 6 A 66 ARG HELIX 1 1 PRO A 51 TYR A 54 4 4 SHEET 1 A 5 THR A 47 PRO A 51 0 SHEET 2 A 5 TRP A 36 SER A 41 -1 N VAL A 39 O GLY A 48 SHEET 3 A 5 LYS A 25 ASN A 30 -1 N ASN A 30 O GLU A 38 SHEET 4 A 5 PHE A 4 ALA A 6 -1 N PHE A 4 O PHE A 26 SHEET 5 A 5 LEU A 55 PRO A 57 -1 O ALA A 56 N GLU A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1