HEADER HYDROLASE/HYDROLASE INHIBITOR 05-AUG-91 2LPR TITLE STRUCTURAL BASIS FOR BROAD SPECIFICITY IN ALPHA-LYTIC PROTEASE MUTANTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-LYTIC PROTEASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.12; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHOXYSUCCINYL-ALA-ALA-PRO-VALINE BORONIC ACID INHIBITOR; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSOBACTER ENZYMOGENES; SOURCE 3 ORGANISM_TAXID: 69; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.BONE,D.A.AGARD REVDAT 3 13-JUL-11 2LPR 1 VERSN REVDAT 2 24-FEB-09 2LPR 1 VERSN REVDAT 1 15-JAN-93 2LPR 0 JRNL AUTH R.BONE,A.FUJISHIGE,C.A.KETTNER,D.A.AGARD JRNL TITL STRUCTURAL BASIS FOR BROAD SPECIFICITY IN ALPHA-LYTIC JRNL TITL 2 PROTEASE MUTANTS. JRNL REF BIOCHEMISTRY V. 30 10388 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 1931963 JRNL DOI 10.1021/BI00107A005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.BONE,D.FRANK,D.KETTNER,D.A.AGARD REMARK 1 TITL STRUCTURAL ANALYSIS OF SPECIFICITY: ALPHA-LYTIC PROTEASE REMARK 1 TITL 2 COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES REMARK 1 REF BIOCHEMISTRY V. 28 7600 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.BONE,J.L.SILEN,D.A.AGARD REMARK 1 TITL STRUCTURAL PLASTICITY BROADENS THE SPECIFICITY OF AN REMARK 1 TITL 2 ENGINEERED PROTEASE REMARK 1 REF NATURE V. 339 191 1989 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.A.KETTNER,R.BONE,D.A.AGARD,W.W.BACHOVCHIN REMARK 1 TITL KINETIC PROPERTIES OF THE BINDING OF ALPHA-LYTIC PROTEASE TO REMARK 1 TITL 2 PEPTIDE BORONIC ACIDS REMARK 1 REF BIOCHEMISTRY V. 27 7682 1988 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.BONE,A.B.SHENVI,C.A.KETTNER,D.A.AGARD REMARK 1 TITL SERINE PROTEASE MECHANISM: STRUCTURE OF AN INHIBITORY REMARK 1 TITL 2 COMPLEX OF ALPHA-LYTIC PROTEASE AND A TIGHTLY BOUND PEPTIDE REMARK 1 TITL 3 BORONIC ACID REMARK 1 REF BIOCHEMISTRY V. 26 7609 1987 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.FUJINAGA,L.T.J.DELBAERE,G.D.BRAYER,M.N.G.JAMES REMARK 1 TITL REFINED STRUCTURE OF ALPHA-LYTIC PROTEASE AT 1.7 ANGSTROMS REMARK 1 TITL 2 RESOLUTION. ANALYSIS OF HYDROGEN BONDING AND SOLVENT REMARK 1 TITL 3 STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 184 479 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH G.D.BRAYER,L.T.J.DELBAERE,M.N.G.JAMES REMARK 1 TITL MOLECULAR STRUCTURE OF THE ALPHA-LYTIC PROTEASE FROM REMARK 1 TITL 2 MYXOBACTER 495 AT 2.8 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 131 743 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.053 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE METHOXYSUCCINYL PORTION OF THE REMARK 3 INHIBITOR WAS DISORDERED AND NO COORDINATES ARE INCLUDED FOR IT REMARK 3 IN THIS ENTRY REMARK 4 REMARK 4 2LPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.72667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.72667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.45333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 INHIBITORY PEPTIDE BORONIC ACIDS ARE PEPTIDE ANALOGS IN WHICH THE C REMARK 400 -TERMINAL CARBOXYL GROUP HAS BEEN REPLACED WITH THE BORONIC ACID REMARK 400 GROUP (B(OH)2). REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSU P 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48B NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 48B NE - CZ - NH2 ANGL. DEV. = -12.8 DEGREES REMARK 500 HIS A 57 CA - C - O ANGL. DEV. = -12.9 DEGREES REMARK 500 THR A 62 CA - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 91 CD - NE - CZ ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 91 NH1 - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 SER A 107 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 SER A 110 CA - CB - OG ANGL. DEV. = -18.8 DEGREES REMARK 500 GLN A 112 CG - CD - OE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 SER A 120D N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 125 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLU A 129 OE1 - CD - OE2 ANGL. DEV. = 10.8 DEGREES REMARK 500 GLU A 129 CG - CD - OE2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER A 139 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 THR A 161 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 GLU A 174 OE1 - CD - OE2 ANGL. DEV. = 7.9 DEGREES REMARK 500 GLU A 174 CG - CD - OE2 ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 192B CD - NE - CZ ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 192B NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 192B NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 194 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 39 -82.59 -131.98 REMARK 500 ASN A 64 -0.92 67.03 REMARK 500 PHE A 94 131.78 -170.01 REMARK 500 PRO A 99A -158.87 -81.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 192B 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 232 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 364 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 410 DISTANCE = 5.09 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 INHIBITORY PEPTIDE BORONIC ACIDS ARE PEPTIDE ANALOGS IN REMARK 600 WHICH THE C-TERMINAL CARBOXYL GROUP HAS BEEN REPLACED WITH REMARK 600 THE BORONIC ACID GROUP (B(OH)2). REMARK 600 REMARK 600 INHIBITOR NUMBERING IS BY ANALOGY TO PROTEASE SUBSTRATE REMARK 600 NOMENCLATURE IN WHICH THE RESIDUE PRIOR TO THE SCISSILE REMARK 600 BOND IS THE P1 RESIDUE, THE NEXT TOWARDS THE N-TERMINUS IS REMARK 600 THE P2 RESIDUE ETC. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN P OF METHOXYSUCCINYL-ALA- REMARK 800 ALA-PRO-VALINE BORONIC ACID INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A RESIDUE NUMBERING IS DONE BY HOMOLOGY WITH CHYMOTRYPSIN FOR REMARK 999 RESIDUES 15A - 244. CHAIN P INHIBITOR NUMBERING IS DONE BY ANALOGY REMARK 999 TO PROTEASE SUBSTRATE NOMENCLATURE IN WHICH THE RESIDUE PRIOR TO REMARK 999 THE SCISSILE BOND IS THE P1 RESIDUE, THE NEXT TOWARD THE N-TERMINUS REMARK 999 IS THE P2 RESIDUE, ETC. DBREF 2LPR A 15A 244 UNP P00778 PRLA_LYSEN 200 397 DBREF 2LPR P 1 5 PDB 2LPR 2LPR 5 1 SEQADV 2LPR ALA A 192 UNP P00778 MET 337 CONFLICT SEQRES 1 A 198 ALA ASN ILE VAL GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 A 198 ALA SER LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 A 198 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY THR SEQRES 4 A 198 VAL ASN ALA THR ALA ARG ILE GLY GLY ALA VAL VAL GLY SEQRES 5 A 198 THR PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 A 198 TRP VAL SER LEU THR SER ALA GLN THR LEU LEU PRO ARG SEQRES 7 A 198 VAL ALA ASN GLY SER SER PHE VAL THR VAL ARG GLY SER SEQRES 8 A 198 THR GLU ALA ALA VAL GLY ALA ALA VAL CYS ARG SER GLY SEQRES 9 A 198 ARG THR THR GLY TYR GLN CYS GLY THR ILE THR ALA LYS SEQRES 10 A 198 ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG GLY SEQRES 11 A 198 LEU THR GLN GLY ASN ALA CYS ALA GLY ARG GLY ASP SER SEQRES 12 A 198 GLY GLY SER TRP ILE THR SER ALA GLY GLN ALA GLN GLY SEQRES 13 A 198 VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN ASN SEQRES 14 A 198 CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE GLU SEQRES 15 A 198 ARG LEU GLN PRO ILE LEU SER GLN TYR GLY LEU SER LEU SEQRES 16 A 198 VAL THR GLY SEQRES 1 P 5 MSU ALA ALA PRO B2V MODRES 2LPR B2V P 1 VAL VALINE BORONIC ACID HET B2V P 1 8 HET SO4 A 1 5 HETNAM B2V VALINE BORONIC ACID HETNAM SO4 SULFATE ION FORMUL 2 B2V C4 H12 B N O2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *180(H2 O) HELIX 1 1 ALA A 55 GLY A 59 5 5 HELIX 2 2 GLY A 221 ARG A 224 5 7 HELIX 3 3 LEU A 231 GLY A 238 1 9 SHEET 1 A 3 THR A 113 SER A 120C 0 SHEET 1 B 8 SER A 40 SER A 43 0 SHEET 2 B 8 GLU A 30 ILE A 33 -1 O TYR A 31 N CYS A 42 SHEET 3 B 8 ALA A 83 VAL A 93 -1 O ALA A 83 N ILE A 80 SHEET 4 B 8 ARG A 103 LEU A 108 -1 O ARG A 103 N VAL A 93 SHEET 5 B 8 THR A 49 THR A 54 -1 O LYS A 50 N LEU A 108 SHEET 6 B 8 SER A 240 LEU A 241 -1 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.06 SSBOND 2 CYS A 137 CYS A 159 1555 1555 2.01 SSBOND 3 CYS A 191 CYS A 220 1555 1555 2.02 LINK N B2V P 1 C PRO P 2 1555 1555 1.33 LINK B B2V P 1 OG SER A 195 1555 1555 1.57 CISPEP 1 PHE A 94 PRO A 99A 0 -3.56 SITE 1 AC1 7 ALA A 15A ASN A 15B ARG A 230 PRO A 233 SITE 2 AC1 7 HOH A 270 HOH A 281 HOH A 371 SITE 1 AC2 14 HIS A 57 ARG A 125 TYR A 171 GLY A 192A SITE 2 AC2 14 GLY A 193 ASP A 194 SER A 195 MET A 213 SITE 3 AC2 14 SER A 214 GLY A 215 GLY A 216 VAL A 217A SITE 4 AC2 14 HOH P 89 HOH P 102 CRYST1 66.250 66.250 80.180 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015094 0.008715 0.000000 0.00000 SCALE2 0.000000 0.017429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012472 0.00000