HEADER RNA BINDING PROTEIN 23-FEB-12 2LQ5 TITLE NMR STRUCTURE OF THE RNA BINDING MOTIF 39 (RBM39) FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 39; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 3 DOMAIN RESIDUES 418-530; COMPND 5 SYNONYM: COACTIVATOR OF ACTIVATING PROTEIN 1 AND ESTROGEN RECEPTORS, COMPND 6 COACTIVATOR OF AP-1 AND ERS, RNA-BINDING MOTIF PROTEIN 39, RNA- COMPND 7 BINDING REGION-CONTAINING PROTEIN 2, TRANSCRIPTION COACTIVATOR CAPER; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RBM39, CAPER, RNPC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS RNA BINDING DOMAIN, RNA BINDING PROTEIN, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PARTNERSHIP FOR KEYWDS 3 T-CELL BIOLOGY, TCELL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,S.K.DUTTA,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG),PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 3 14-JUN-23 2LQ5 1 REMARK REVDAT 2 21-OCT-15 2LQ5 1 AUTHOR JRNL REVDAT 1 07-MAR-12 2LQ5 0 JRNL AUTH P.SERRANO,S.K.DUTTA,M.GERALT,K.WUTHRICH, JRNL AUTH 2 JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 3 PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) JRNL TITL NMR STRUCTURE OF THE RNA BINDING MOTIF 39 (RBM39) FROM MUS JRNL TITL 2 MUSCULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, OPALP REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.083 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-95% 13C; U-95% 15N] REMARK 210 PROTEIN, 4.5 MM SODIUM AZIDE, 50 REMARK 210 MM SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC; 4D APSY REMARK 210 HACANH; 5D APSY CBCACONH; 5D REMARK 210 APSY HACACONH; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA, TOPSPIN, UNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 12 35.22 -150.08 REMARK 500 1 ASN A 13 82.10 178.00 REMARK 500 1 MET A 14 -11.00 -140.85 REMARK 500 1 GLU A 21 17.42 -149.72 REMARK 500 1 HIS A 40 -66.90 -99.09 REMARK 500 1 ASN A 51 57.82 -117.14 REMARK 500 1 ALA A 80 85.09 -66.03 REMARK 500 1 PHE A 98 70.80 -117.66 REMARK 500 1 ALA A 104 94.29 -45.26 REMARK 500 1 ARG A 112 123.81 -174.23 REMARK 500 2 LEU A 4 34.28 -149.29 REMARK 500 2 SER A 12 59.49 -147.38 REMARK 500 2 ASN A 13 4.57 -179.10 REMARK 500 2 GLU A 21 16.20 -148.01 REMARK 500 2 ARG A 112 119.79 -166.91 REMARK 500 3 SER A 12 33.68 -150.16 REMARK 500 3 ASN A 13 -0.09 -158.19 REMARK 500 3 GLU A 20 11.91 -68.21 REMARK 500 3 LEU A 74 -56.25 -124.45 REMARK 500 3 ALA A 80 81.27 -66.85 REMARK 500 3 SER A 101 8.73 -68.95 REMARK 500 3 ALA A 104 106.06 -57.48 REMARK 500 3 ARG A 112 113.25 -160.66 REMARK 500 4 SER A 12 68.73 -153.72 REMARK 500 4 ASN A 13 7.02 178.20 REMARK 500 4 GLU A 20 34.50 -159.50 REMARK 500 4 HIS A 45 118.63 -166.31 REMARK 500 5 PRO A 3 82.33 -65.21 REMARK 500 5 SER A 12 49.72 -157.16 REMARK 500 5 ASN A 13 -5.94 -165.37 REMARK 500 5 THR A 19 56.83 -112.95 REMARK 500 5 GLU A 20 87.37 -154.29 REMARK 500 5 TRP A 25 3.85 -66.49 REMARK 500 5 HIS A 40 -65.96 -120.19 REMARK 500 5 ALA A 80 -6.54 -57.00 REMARK 500 5 ARG A 112 122.02 -173.97 REMARK 500 6 LEU A 4 33.38 -153.72 REMARK 500 6 SER A 12 63.00 -158.10 REMARK 500 6 ASN A 13 12.21 178.48 REMARK 500 6 GLU A 21 13.35 -156.96 REMARK 500 6 HIS A 45 137.60 -170.80 REMARK 500 6 GLN A 54 40.77 -145.33 REMARK 500 6 PHE A 79 -178.80 -64.21 REMARK 500 6 ALA A 80 27.95 -67.64 REMARK 500 6 PHE A 98 72.31 -117.82 REMARK 500 6 ALA A 104 96.61 -66.52 REMARK 500 7 SER A 12 39.75 -150.11 REMARK 500 7 ASN A 13 9.63 -169.82 REMARK 500 7 VAL A 23 82.41 -67.91 REMARK 500 7 TRP A 25 0.04 -66.60 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 112 0.08 SIDE CHAIN REMARK 500 2 TYR A 88 0.07 SIDE CHAIN REMARK 500 5 TYR A 88 0.08 SIDE CHAIN REMARK 500 6 TYR A 58 0.07 SIDE CHAIN REMARK 500 7 PHE A 9 0.08 SIDE CHAIN REMARK 500 7 ARG A 112 0.08 SIDE CHAIN REMARK 500 8 ARG A 113 0.09 SIDE CHAIN REMARK 500 9 TYR A 88 0.08 SIDE CHAIN REMARK 500 9 TYR A 94 0.07 SIDE CHAIN REMARK 500 9 ARG A 112 0.10 SIDE CHAIN REMARK 500 11 TYR A 94 0.12 SIDE CHAIN REMARK 500 12 TYR A 94 0.07 SIDE CHAIN REMARK 500 13 ARG A 77 0.09 SIDE CHAIN REMARK 500 13 ARG A 113 0.13 SIDE CHAIN REMARK 500 14 ARG A 77 0.08 SIDE CHAIN REMARK 500 16 TYR A 94 0.08 SIDE CHAIN REMARK 500 16 ARG A 112 0.09 SIDE CHAIN REMARK 500 18 ARG A 112 0.08 SIDE CHAIN REMARK 500 19 TYR A 88 0.09 SIDE CHAIN REMARK 500 19 ARG A 112 0.15 SIDE CHAIN REMARK 500 20 HIS A 95 0.09 SIDE CHAIN REMARK 500 20 ARG A 113 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18292 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-421759 RELATED DB: TARGETTRACK DBREF 2LQ5 A 1 113 UNP Q8VH51 RBM39_MOUSE 418 530 SEQRES 1 A 113 VAL GLN PRO LEU ALA THR GLN CYS PHE GLN LEU SER ASN SEQRES 2 A 113 MET PHE ASN PRO GLN THR GLU GLU GLU VAL GLY TRP ASP SEQRES 3 A 113 THR GLU ILE LYS ASP ASP VAL ILE GLU GLU CYS ASN LYS SEQRES 4 A 113 HIS GLY GLY VAL ILE HIS ILE TYR VAL ASP LYS ASN SER SEQRES 5 A 113 ALA GLN GLY ASN VAL TYR VAL LYS CYS PRO SER ILE ALA SEQRES 6 A 113 ALA ALA ILE ALA ALA VAL ASN ALA LEU HIS GLY ARG TRP SEQRES 7 A 113 PHE ALA GLY LYS MET ILE THR ALA ALA TYR VAL PRO LEU SEQRES 8 A 113 PRO THR TYR HIS ASN LEU PHE PRO ASP SER MET THR ALA SEQRES 9 A 113 THR GLN LEU LEU VAL PRO SER ARG ARG HELIX 1 1 TRP A 25 GLY A 41 1 17 HELIX 2 2 SER A 63 HIS A 75 1 13 HELIX 3 3 PRO A 90 PHE A 98 1 9 SHEET 1 A 4 HIS A 45 TYR A 47 0 SHEET 2 A 4 TYR A 58 LYS A 60 -1 O TYR A 58 N TYR A 47 SHEET 3 A 4 CYS A 8 LEU A 11 -1 N PHE A 9 O VAL A 59 SHEET 4 A 4 ALA A 86 TYR A 88 -1 O ALA A 87 N GLN A 10 SHEET 1 B 2 TRP A 78 PHE A 79 0 SHEET 2 B 2 LYS A 82 MET A 83 -1 O LYS A 82 N PHE A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1