HEADER TRANSCRIPTION REGULATOR 09-MAR-12 2LQK TITLE NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE CDNL PROTEIN TITLE 2 FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-67; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 5 GENE: CDNL, TT_C1818; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTYB12 KEYWDS RNA POLYMERASE INTERACTING DOMAIN, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JIMENEZ,S.PADMANABHAN REVDAT 3 14-JUN-23 2LQK 1 REMARK SEQADV REVDAT 2 08-AUG-12 2LQK 1 JRNL REVDAT 1 01-AUG-12 2LQK 0 JRNL AUTH A.GALLEGO-GARCIA,Y.MIRASSOU,M.ELIAS-ARNANZ,S.PADMANABHAN, JRNL AUTH 2 M.A.JIMENEZ JRNL TITL NMR STRUCTURE NOTE: N-TERMINAL DOMAIN OF THERMUS JRNL TITL 2 THERMOPHILUS CDNL. JRNL REF J.BIOMOL.NMR V. 53 355 2012 JRNL REFN ISSN 0925-2738 JRNL PMID 22782235 JRNL DOI 10.1007/S10858-012-9648-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, AND KOLLM (AMBER) REMARK 3 , GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102708. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288; 308 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.15; 0.15; 0.15 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM TTCDNLNT, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 90 % H2O, 10 % D2O, REMARK 210 90% H2O/10% D2O; 1 MM TTCDNLNT, REMARK 210 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 0.5 MM DSS, 100 % D2O, REMARK 210 100% D2O; 1 MM [U-100% 13C; U- REMARK 210 100% 15N] TTCDNLNT, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 90 % H2O, 10 % D2O, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] TTCDNLNT, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HBHANH; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -56.08 -149.97 REMARK 500 1 MET A 4 -52.17 -149.12 REMARK 500 1 GLU A 6 -66.67 -122.26 REMARK 500 1 GLU A 69 -60.17 -109.43 REMARK 500 2 MET A 4 -43.43 -152.03 REMARK 500 3 LYS A 5 96.92 -57.53 REMARK 500 3 GLU A 6 -69.99 -97.83 REMARK 500 3 LEU A 66 81.66 -168.89 REMARK 500 4 GLU A 6 -75.41 -91.47 REMARK 500 5 MET A 4 -77.47 -135.99 REMARK 500 6 HIS A 3 -65.03 -92.50 REMARK 500 6 PRO A 68 99.93 -69.39 REMARK 500 7 MET A 4 -64.43 -90.01 REMARK 500 9 HIS A 3 20.01 -146.57 REMARK 500 9 GLU A 6 -64.21 -142.00 REMARK 500 9 LEU A 66 101.22 -58.22 REMARK 500 11 HIS A 3 46.74 -155.60 REMARK 500 12 LYS A 5 15.11 -141.45 REMARK 500 12 GLU A 69 -57.30 -125.66 REMARK 500 14 LYS A 5 70.42 -109.54 REMARK 500 14 LEU A 66 109.15 -58.92 REMARK 500 16 MET A 4 -52.78 -152.96 REMARK 500 17 GLU A 6 -72.26 -102.06 REMARK 500 17 SER A 30 96.44 -68.41 REMARK 500 18 GLU A 6 -76.02 -131.09 REMARK 500 19 SER A 30 96.82 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18193 RELATED DB: BMRB DBREF 2LQK A 4 70 UNP Q72GN0 Q72GN0_THET2 1 67 SEQADV 2LQK ALA A 1 UNP Q72GN0 EXPRESSION TAG SEQADV 2LQK GLY A 2 UNP Q72GN0 EXPRESSION TAG SEQADV 2LQK HIS A 3 UNP Q72GN0 EXPRESSION TAG SEQRES 1 A 70 ALA GLY HIS MET LYS GLU PHE ARG PRO GLY ASP LYS VAL SEQRES 2 A 70 VAL LEU PRO PRO TYR GLY VAL GLY VAL VAL ALA GLY ILE SEQRES 3 A 70 ALA GLN ARG SER VAL SER GLY VAL SER ARG ALA TYR TYR SEQRES 4 A 70 GLN VAL ASP PHE PRO GLY SER ARG SER LYS ALA TYR VAL SEQRES 5 A 70 PRO VAL GLU ALA PRO HIS SER VAL GLY LEU ARG LYS ALA SEQRES 6 A 70 LEU ALA PRO GLU GLU SHEET 1 A 5 TYR A 51 PRO A 53 0 SHEET 2 A 5 VAL A 34 ASP A 42 -1 N TYR A 39 O VAL A 52 SHEET 3 A 5 GLY A 21 VAL A 31 -1 N GLY A 25 O GLN A 40 SHEET 4 A 5 LYS A 12 VAL A 14 -1 N VAL A 13 O GLY A 21 SHEET 5 A 5 ARG A 63 LYS A 64 -1 O ARG A 63 N VAL A 14 CISPEP 1 PRO A 16 PRO A 17 1 -0.06 CISPEP 2 PRO A 16 PRO A 17 2 1.75 CISPEP 3 PRO A 16 PRO A 17 3 0.14 CISPEP 4 PRO A 16 PRO A 17 4 0.18 CISPEP 5 PRO A 16 PRO A 17 5 0.22 CISPEP 6 PRO A 16 PRO A 17 6 0.06 CISPEP 7 PRO A 16 PRO A 17 7 -0.38 CISPEP 8 PRO A 16 PRO A 17 8 -0.10 CISPEP 9 PRO A 16 PRO A 17 9 0.02 CISPEP 10 PRO A 16 PRO A 17 10 0.00 CISPEP 11 PRO A 16 PRO A 17 11 0.01 CISPEP 12 PRO A 16 PRO A 17 12 0.24 CISPEP 13 PRO A 16 PRO A 17 13 0.58 CISPEP 14 PRO A 16 PRO A 17 14 -0.10 CISPEP 15 PRO A 16 PRO A 17 15 0.05 CISPEP 16 PRO A 16 PRO A 17 16 -0.03 CISPEP 17 PRO A 16 PRO A 17 17 0.27 CISPEP 18 PRO A 16 PRO A 17 18 0.14 CISPEP 19 PRO A 16 PRO A 17 19 0.16 CISPEP 20 PRO A 16 PRO A 17 20 2.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1