HEADER SIGNALING PROTEIN 09-MAR-12 2LQN TITLE SOLUTION STRUCTURE OF CRKL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRK-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET42A KEYWDS SH2, SH3, V-CRK SARCOMA VIRUS CT10 ONCOGENE HOMOLOG (AVIAN)-LIKE, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.JANKOWSKI,T.SALEH,C.KALODIMOS REVDAT 5 15-MAY-24 2LQN 1 REMARK REVDAT 4 14-JUN-23 2LQN 1 REMARK REVDAT 3 14-OCT-15 2LQN 1 ATOM MODEL REVDAT 2 06-JUN-12 2LQN 1 JRNL REVDAT 1 16-MAY-12 2LQN 0 JRNL AUTH W.JANKOWSKI,T.SALEH,M.T.PAI,G.SRIRAM,R.B.BIRGE,C.G.KALODIMOS JRNL TITL DOMAIN ORGANIZATION DIFFERENCES EXPLAIN BCR-ABL'S PREFERENCE JRNL TITL 2 FOR CRKL OVER CRKII. JRNL REF NAT.CHEM.BIOL. V. 8 590 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22581121 JRNL DOI 10.1038/NCHEMBIO.954 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102711. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.8 MM [U-100% 15N] REMARK 210 POTASSIUM PHOSPHATE, 0.3-0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] SODIUM REMARK 210 CHLORIDE, 0.3-0.8 MM [U-13C; U- REMARK 210 15N; U-2H] BETA-MERCAPTOETHANOL, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 PHE A 286 HG1 THR A 289 1.19 REMARK 500 H LYS A 145 HG3 GLU A 148 1.22 REMARK 500 HB2 HIS A 187 HB2 HIS A 190 1.30 REMARK 500 HG22 VAL A 128 HG3 LYS A 180 1.32 REMARK 500 OD2 ASP A 7 H ASP A 10 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 57 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 5 ARG A 57 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 16 ARG A 57 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 5 -66.61 -142.14 REMARK 500 1 PHE A 6 -147.18 11.15 REMARK 500 1 SER A 9 -25.92 -161.23 REMARK 500 1 VAL A 19 -76.46 -138.55 REMARK 500 1 SER A 20 171.66 94.80 REMARK 500 1 GLN A 29 82.00 -66.50 REMARK 500 1 GLN A 31 -105.16 45.41 REMARK 500 1 HIS A 33 150.62 66.85 REMARK 500 1 ARG A 57 66.49 -167.44 REMARK 500 1 ASP A 75 -30.41 74.89 REMARK 500 1 TYR A 92 101.05 64.82 REMARK 500 1 LEU A 93 -99.25 -63.66 REMARK 500 1 THR A 95 14.85 -154.37 REMARK 500 1 PRO A 106 40.78 -95.76 REMARK 500 1 SER A 107 108.67 -51.39 REMARK 500 1 MET A 110 -168.70 179.81 REMARK 500 1 SER A 114 -97.91 56.86 REMARK 500 1 ALA A 115 85.06 51.50 REMARK 500 1 ASN A 117 83.45 56.01 REMARK 500 1 THR A 120 -66.88 -157.04 REMARK 500 1 GLU A 122 30.02 -91.93 REMARK 500 1 ASP A 123 -75.86 -123.77 REMARK 500 1 LEU A 125 88.38 67.73 REMARK 500 1 GLU A 126 -51.84 173.29 REMARK 500 1 ASP A 133 102.08 54.99 REMARK 500 1 ASN A 137 40.50 70.98 REMARK 500 1 LYS A 145 -151.81 -110.16 REMARK 500 1 PRO A 176 3.09 -63.81 REMARK 500 1 GLU A 179 48.21 -159.73 REMARK 500 1 LEU A 181 -91.41 -73.22 REMARK 500 1 SER A 184 -83.44 -76.65 REMARK 500 1 SER A 185 168.88 175.26 REMARK 500 1 PRO A 186 96.54 -64.06 REMARK 500 1 ASN A 192 -64.47 70.70 REMARK 500 1 ARG A 193 80.06 59.13 REMARK 500 1 SER A 197 124.01 70.49 REMARK 500 1 THR A 212 132.88 72.88 REMARK 500 1 SER A 220 -165.80 -113.90 REMARK 500 1 LEU A 230 95.85 64.15 REMARK 500 1 PRO A 231 -159.07 -73.50 REMARK 500 1 SER A 232 99.22 -57.63 REMARK 500 1 PRO A 248 -151.45 -75.67 REMARK 500 1 THR A 254 21.38 -151.45 REMARK 500 1 VAL A 279 -109.68 -109.27 REMARK 500 1 PRO A 287 62.26 -62.98 REMARK 500 1 PHE A 288 -14.77 62.54 REMARK 500 1 THR A 289 -12.31 69.68 REMARK 500 1 HIS A 290 25.00 89.37 REMARK 500 2 SER A 2 142.00 70.13 REMARK 500 2 SER A 8 76.88 -69.36 REMARK 500 REMARK 500 THIS ENTRY HAS 752 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 178 GLU A 179 7 144.33 REMARK 500 SER A 56 ARG A 57 11 -145.64 REMARK 500 SER A 9 ASP A 10 12 -148.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 169 0.08 SIDE CHAIN REMARK 500 12 ARG A 169 0.10 SIDE CHAIN REMARK 500 18 ARG A 32 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18321 RELATED DB: BMRB DBREF 2LQN A 1 303 UNP P46109 CRKL_HUMAN 1 303 SEQRES 1 A 303 MET SER SER ALA ARG PHE ASP SER SER ASP ARG SER ALA SEQRES 2 A 303 TRP TYR MET GLY PRO VAL SER ARG GLN GLU ALA GLN THR SEQRES 3 A 303 ARG LEU GLN GLY GLN ARG HIS GLY MET PHE LEU VAL ARG SEQRES 4 A 303 ASP SER SER THR CYS PRO GLY ASP TYR VAL LEU SER VAL SEQRES 5 A 303 SER GLU ASN SER ARG VAL SER HIS TYR ILE ILE ASN SER SEQRES 6 A 303 LEU PRO ASN ARG ARG PHE LYS ILE GLY ASP GLN GLU PHE SEQRES 7 A 303 ASP HIS LEU PRO ALA LEU LEU GLU PHE TYR LYS ILE HIS SEQRES 8 A 303 TYR LEU ASP THR THR THR LEU ILE GLU PRO ALA PRO ARG SEQRES 9 A 303 TYR PRO SER PRO PRO MET GLY SER VAL SER ALA PRO ASN SEQRES 10 A 303 LEU PRO THR ALA GLU ASP ASN LEU GLU TYR VAL ARG THR SEQRES 11 A 303 LEU TYR ASP PHE PRO GLY ASN ASP ALA GLU ASP LEU PRO SEQRES 12 A 303 PHE LYS LYS GLY GLU ILE LEU VAL ILE ILE GLU LYS PRO SEQRES 13 A 303 GLU GLU GLN TRP TRP SER ALA ARG ASN LYS ASP GLY ARG SEQRES 14 A 303 VAL GLY MET ILE PRO VAL PRO TYR VAL GLU LYS LEU VAL SEQRES 15 A 303 ARG SER SER PRO HIS GLY LYS HIS GLY ASN ARG ASN SER SEQRES 16 A 303 ASN SER TYR GLY ILE PRO GLU PRO ALA HIS ALA TYR ALA SEQRES 17 A 303 GLN PRO GLN THR THR THR PRO LEU PRO ALA VAL SER GLY SEQRES 18 A 303 SER PRO GLY ALA ALA ILE THR PRO LEU PRO SER THR GLN SEQRES 19 A 303 ASN GLY PRO VAL PHE ALA LYS ALA ILE GLN LYS ARG VAL SEQRES 20 A 303 PRO CYS ALA TYR ASP LYS THR ALA LEU ALA LEU GLU VAL SEQRES 21 A 303 GLY ASP ILE VAL LYS VAL THR ARG MET ASN ILE ASN GLY SEQRES 22 A 303 GLN TRP GLU GLY GLU VAL ASN GLY ARG LYS GLY LEU PHE SEQRES 23 A 303 PRO PHE THR HIS VAL LYS ILE PHE ASP PRO GLN ASN PRO SEQRES 24 A 303 ASP GLU ASN GLU HELIX 1 1 ASP A 10 TRP A 14 1 5 HELIX 2 2 VAL A 19 LEU A 28 1 10 HELIX 3 3 HIS A 80 TYR A 88 1 9 HELIX 4 4 GLU A 202 ALA A 206 5 5 SHEET 1 A 6 TYR A 15 GLY A 17 0 SHEET 2 A 6 MET A 35 ASP A 40 1 O ASP A 40 N GLY A 17 SHEET 3 A 6 TYR A 48 SER A 53 -1 O SER A 53 N MET A 35 SHEET 4 A 6 SER A 59 LEU A 66 -1 O TYR A 61 N LEU A 50 SHEET 5 A 6 ARG A 70 ILE A 73 -1 O ARG A 70 N LEU A 66 SHEET 6 A 6 GLN A 76 PHE A 78 -1 O PHE A 78 N PHE A 71 SHEET 1 B 3 TYR A 15 GLY A 17 0 SHEET 2 B 3 MET A 35 ASP A 40 1 O ASP A 40 N GLY A 17 SHEET 3 B 3 GLU A 100 PRO A 101 1 O GLU A 100 N PHE A 36 SHEET 1 C 5 VAL A 170 PRO A 174 0 SHEET 2 C 5 TRP A 160 ARG A 164 -1 N TRP A 161 O ILE A 173 SHEET 3 C 5 GLU A 148 GLU A 154 -1 N GLU A 154 O SER A 162 SHEET 4 C 5 TYR A 127 THR A 130 -1 N VAL A 128 O LEU A 150 SHEET 5 C 5 VAL A 178 LYS A 180 -1 O GLU A 179 N ARG A 129 SHEET 1 D 5 LYS A 283 PRO A 287 0 SHEET 2 D 5 GLN A 274 GLU A 278 -1 N TRP A 275 O PHE A 286 SHEET 3 D 5 ASP A 262 ARG A 268 -1 N ARG A 268 O GLU A 276 SHEET 4 D 5 VAL A 238 ALA A 242 -1 N ALA A 240 O VAL A 264 SHEET 5 D 5 VAL A 291 PHE A 294 -1 O LYS A 292 N LYS A 241 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1