HEADER PROTEIN BINDING 13-MAR-12 2LQR TITLE NMR STRUCTURE OF IG3 DOMAIN OF PALLADIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALLADIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE C2-TYPE 3 DOMAIN RESIDUES 1022-1126; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PALLD, KIAA0992; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMAL-C2X KEYWDS ACTIN BINDING PROTEIN, IMMUNOGLUBULIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.R.BECK,R.D.S.DIXON IV,C.A.OTEY,S.L.CAMPBELL,G.S.MURPHY REVDAT 5 01-MAY-24 2LQR 1 REMARK SEQADV REVDAT 4 11-SEP-13 2LQR 1 JRNL REVDAT 3 24-JUL-13 2LQR 1 JRNL REVDAT 2 26-JUN-13 2LQR 1 JRNL REVDAT 1 23-JAN-13 2LQR 0 JRNL AUTH M.R.BECK,R.D.DIXON,S.M.GOICOECHEA,G.S.MURPHY,J.G.BRUNGARDT, JRNL AUTH 2 M.T.BEAM,P.SRINATH,J.PATEL,J.MOHIUDDIN,C.A.OTEY,S.L.CAMPBELL JRNL TITL STRUCTURE AND FUNCTION OF PALLADIN'S ACTIN BINDING DOMAIN. JRNL REF J.MOL.BIOL. V. 425 3325 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23806659 JRNL DOI 10.1016/J.JMB.2013.06.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, ROSETTA RASREC, CYANA REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), O.F. LANGE REMARK 3 AND D. BAKER (ROSETTA), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RASREC METHOD HAS SIX STAGES THAT CYCLE REMARK 3 BETWEEN GENERATING ROSETTA FRAGMENTS, PRODUCING LOW ENERGY REMARK 3 MODELS, AND BIASING CONFORMATIONAL SEARCH SPACE TOWARDS LOW REMARK 3 ENERGY SPACE REMARK 4 REMARK 4 2LQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102715. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM TRIS-MALEATE, 150 MM NACL, REMARK 210 2 MM DTT, 0.01 % SODIUM AZIDE, REMARK 210 10 % D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRDRAW, CYANA 2.2, REMARK 210 PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 SER A 108 C SER A 108 O -0.231 REMARK 500 2 SER A 108 C SER A 108 O -0.230 REMARK 500 3 SER A 108 C SER A 108 O -0.230 REMARK 500 4 SER A 108 C SER A 108 O -0.230 REMARK 500 5 SER A 108 C SER A 108 O -0.230 REMARK 500 6 SER A 108 C SER A 108 O -0.230 REMARK 500 7 SER A 108 C SER A 108 O -0.230 REMARK 500 8 SER A 108 C SER A 108 O -0.227 REMARK 500 9 SER A 108 C SER A 108 O -0.229 REMARK 500 10 SER A 108 C SER A 108 O -0.226 REMARK 500 11 SER A 108 C SER A 108 O -0.230 REMARK 500 12 SER A 108 C SER A 108 O -0.227 REMARK 500 13 SER A 108 C SER A 108 O -0.230 REMARK 500 14 SER A 108 C SER A 108 O -0.228 REMARK 500 15 SER A 108 C SER A 108 O -0.230 REMARK 500 16 SER A 108 C SER A 108 O -0.229 REMARK 500 17 SER A 108 C SER A 108 O -0.228 REMARK 500 18 SER A 108 C SER A 108 O -0.231 REMARK 500 19 SER A 108 C SER A 108 O -0.230 REMARK 500 20 SER A 108 C SER A 108 O -0.230 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PHE A 10 87.90 -66.80 REMARK 500 3 SER A 3 -75.07 -137.07 REMARK 500 5 SER A 3 -75.04 -138.91 REMARK 500 5 ASN A 34 101.71 -168.25 REMARK 500 7 SER A 3 74.94 -179.50 REMARK 500 8 SER A 3 -5.01 132.30 REMARK 500 8 ALA A 32 69.10 -101.11 REMARK 500 10 PHE A 10 83.94 -68.71 REMARK 500 11 SER A 3 35.06 174.93 REMARK 500 11 PHE A 10 84.98 -68.98 REMARK 500 13 SER A 3 75.04 -179.32 REMARK 500 14 SER A 3 -27.55 -172.87 REMARK 500 15 PHE A 10 87.36 -69.74 REMARK 500 16 SER A 3 51.12 -91.76 REMARK 500 18 SER A 3 -105.02 -135.08 REMARK 500 18 ASN A 34 106.51 -161.26 REMARK 500 19 PHE A 10 91.52 -69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15512 RELATED DB: BMRB DBREF 2LQR A 4 108 UNP Q9ET54 PALLD_MOUSE 1022 1126 SEQADV 2LQR GLY A 1 UNP Q9ET54 EXPRESSION TAG SEQADV 2LQR GLY A 2 UNP Q9ET54 EXPRESSION TAG SEQADV 2LQR SER A 3 UNP Q9ET54 EXPRESSION TAG SEQRES 1 A 108 GLY GLY SER ASN ALA THR ALA PRO PHE PHE GLU MET LYS SEQRES 2 A 108 LEU LYS HIS TYR LYS ILE PHE GLU GLY MET PRO VAL THR SEQRES 3 A 108 PHE THR CYS ARG VAL ALA GLY ASN PRO LYS PRO LYS ILE SEQRES 4 A 108 TYR TRP PHE LYS ASP GLY LYS GLN ILE SER PRO LYS SER SEQRES 5 A 108 ASP HIS TYR THR ILE GLN ARG ASP LEU ASP GLY THR CYS SEQRES 6 A 108 SER LEU HIS THR THR ALA SER THR LEU ASP ASP ASP GLY SEQRES 7 A 108 ASN TYR THR ILE MET ALA ALA ASN PRO GLN GLY ARG VAL SEQRES 8 A 108 SER CYS THR GLY ARG LEU MET VAL GLN ALA VAL ASN GLN SEQRES 9 A 108 ARG GLY ARG SER SHEET 1 A 5 TYR A 17 PHE A 20 0 SHEET 2 A 5 ARG A 96 GLN A 100 1 O ARG A 96 N TYR A 17 SHEET 3 A 5 GLY A 78 MET A 83 -1 N GLY A 78 O LEU A 97 SHEET 4 A 5 TYR A 40 LYS A 43 -1 N TYR A 40 O MET A 83 SHEET 5 A 5 LYS A 46 GLN A 47 -1 O LYS A 46 N LYS A 43 SHEET 1 B 4 TYR A 17 PHE A 20 0 SHEET 2 B 4 ARG A 96 GLN A 100 1 O ARG A 96 N TYR A 17 SHEET 3 B 4 GLY A 78 MET A 83 -1 N GLY A 78 O LEU A 97 SHEET 4 B 4 SER A 92 CYS A 93 -1 O CYS A 93 N ILE A 82 SHEET 1 C 3 VAL A 25 ARG A 30 0 SHEET 2 C 3 THR A 64 THR A 69 -1 O THR A 69 N VAL A 25 SHEET 3 C 3 TYR A 55 ARG A 59 -1 N GLN A 58 O SER A 66 CISPEP 1 ASN A 34 PRO A 35 1 9.56 CISPEP 2 ASN A 34 PRO A 35 2 7.77 CISPEP 3 ASN A 34 PRO A 35 3 3.89 CISPEP 4 ASN A 34 PRO A 35 4 4.16 CISPEP 5 ASN A 34 PRO A 35 5 1.40 CISPEP 6 ASN A 34 PRO A 35 6 2.05 CISPEP 7 ASN A 34 PRO A 35 7 7.54 CISPEP 8 ASN A 34 PRO A 35 8 7.64 CISPEP 9 ASN A 34 PRO A 35 9 6.06 CISPEP 10 ASN A 34 PRO A 35 10 9.52 CISPEP 11 ASN A 34 PRO A 35 11 9.35 CISPEP 12 ASN A 34 PRO A 35 12 8.91 CISPEP 13 ASN A 34 PRO A 35 13 8.44 CISPEP 14 ASN A 34 PRO A 35 14 9.06 CISPEP 15 ASN A 34 PRO A 35 15 5.13 CISPEP 16 ASN A 34 PRO A 35 16 3.84 CISPEP 17 ASN A 34 PRO A 35 17 9.31 CISPEP 18 ASN A 34 PRO A 35 18 7.84 CISPEP 19 ASN A 34 PRO A 35 19 9.15 CISPEP 20 ASN A 34 PRO A 35 20 9.18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1