HEADER PROTEIN TRANSPORT 16-MAR-12 2LQV TITLE YEBF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YEBF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-118; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEBF, B1847, JW1836; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PT7-5 KEYWDS SECRETION, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.PREHNA,G.ZHANG,X.GONG,M.DUSZYK,M.OKON,L.P.MCINTOSH,J.H.WEINER, AUTHOR 2 N.C.J.STRYNADKA REVDAT 3 14-JUN-23 2LQV 1 REMARK SEQADV REVDAT 2 25-JUL-12 2LQV 1 JRNL REVDAT 1 13-JUN-12 2LQV 0 JRNL AUTH G.PREHNA,G.ZHANG,X.GONG,M.DUSZYK,M.OKON,L.P.MCINTOSH, JRNL AUTH 2 J.H.WEINER,N.C.STRYNADKA JRNL TITL A PROTEIN EXPORT PATHWAY INVOLVING ESCHERICHIA COLI PORINS. JRNL REF STRUCTURE V. 20 1154 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22658749 JRNL DOI 10.1016/J.STR.2012.04.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA, CNSSOLVE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.1; 0.1 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 13C; U-100% REMARK 210 15N] E COLI PROTEIN, 50 MM HEPES, REMARK 210 100 MM SODIUM CHLORIDE, 0.1 MM REMARK 210 TCEP, 0.1 MM PMSF, 95 % H2O, 5 % REMARK 210 D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCACO; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; CCC-TOCSY-NNH; HCC- REMARK 210 TOCSY-NNH; (HB)CB(CGCD)HD- REMARK 210 AROMATIC; HBGCBGCCBGCACONNH; CT- REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, SPARKY, TALOS, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 LEU A 38 HA3 GLY A 42 1.33 REMARK 500 HZ1 LYS A 34 OD1 ASP A 50 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 60 -9.33 74.17 REMARK 500 1 ASP A 84 -78.56 62.06 REMARK 500 2 ASP A 84 -81.01 70.22 REMARK 500 2 GLN A 116 -65.54 -129.75 REMARK 500 3 ASN A 54 47.35 -78.23 REMARK 500 3 LYS A 64 77.80 65.60 REMARK 500 3 ASP A 70 135.52 72.35 REMARK 500 3 ASP A 84 -76.55 68.66 REMARK 500 3 ASP A 85 11.17 -160.14 REMARK 500 4 ASN A 24 77.68 50.33 REMARK 500 4 LYS A 28 -66.14 -99.86 REMARK 500 4 ALA A 60 -76.49 -148.68 REMARK 500 4 GLN A 63 -50.46 74.66 REMARK 500 4 ALA A 69 -54.75 -168.44 REMARK 500 4 ASP A 84 -71.12 73.02 REMARK 500 4 ASP A 85 5.34 -160.89 REMARK 500 4 ARG A 118 -61.30 -130.52 REMARK 500 5 SER A 27 56.80 -153.21 REMARK 500 5 VAL A 66 -71.55 -64.68 REMARK 500 5 ASP A 84 -74.09 59.20 REMARK 500 5 TYR A 102 96.92 68.30 REMARK 500 6 ASN A 23 -169.98 -160.53 REMARK 500 6 LYS A 64 -178.41 -67.85 REMARK 500 6 ASP A 84 -79.05 68.44 REMARK 500 6 TYR A 102 -74.04 -69.28 REMARK 500 6 TYR A 115 -156.08 -94.72 REMARK 500 6 GLN A 116 42.07 -88.50 REMARK 500 7 VAL A 56 23.22 -156.98 REMARK 500 7 ALA A 60 90.55 65.57 REMARK 500 7 ASP A 84 -79.99 73.51 REMARK 500 7 ASP A 85 8.98 -154.04 REMARK 500 7 HIS A 101 48.33 -100.66 REMARK 500 7 TYR A 115 10.19 -144.05 REMARK 500 7 GLN A 116 -86.66 -95.22 REMARK 500 7 ARG A 117 161.05 170.72 REMARK 500 8 ASP A 61 -53.08 -120.03 REMARK 500 8 ASP A 62 -77.39 -73.43 REMARK 500 8 ASP A 84 -73.00 60.84 REMARK 500 8 ASP A 99 149.63 -172.96 REMARK 500 9 ASN A 23 -72.88 -177.72 REMARK 500 9 ARG A 55 -40.33 -144.56 REMARK 500 9 GLN A 68 47.09 -163.83 REMARK 500 9 ALA A 69 -19.23 78.31 REMARK 500 9 ASP A 70 72.21 -112.64 REMARK 500 9 ASP A 84 -71.03 73.94 REMARK 500 9 ASP A 85 2.41 -154.29 REMARK 500 9 LEU A 119 -89.91 -76.71 REMARK 500 10 ARG A 55 -75.04 -87.46 REMARK 500 10 VAL A 56 121.60 -179.23 REMARK 500 10 ASP A 84 -77.47 70.49 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18332 RELATED DB: BMRB DBREF 2LQV A 22 118 UNP P33219 YEBF_ECOLI 22 118 SEQADV 2LQV LEU A 119 UNP P33219 EXPRESSION TAG SEQADV 2LQV GLU A 120 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 121 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 122 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 123 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 124 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 125 UNP P33219 EXPRESSION TAG SEQADV 2LQV HIS A 126 UNP P33219 EXPRESSION TAG SEQRES 1 A 105 ALA ASN ASN GLU THR SER LYS SER VAL THR PHE PRO LYS SEQRES 2 A 105 CYS GLU ASP LEU ASP ALA ALA GLY ILE ALA ALA SER VAL SEQRES 3 A 105 LYS ARG ASP TYR GLN GLN ASN ARG VAL ALA ARG TRP ALA SEQRES 4 A 105 ASP ASP GLN LYS ILE VAL GLY GLN ALA ASP PRO VAL ALA SEQRES 5 A 105 TRP VAL SER LEU GLN ASP ILE GLN GLY LYS ASP ASP LYS SEQRES 6 A 105 TRP SER VAL PRO LEU THR VAL ARG GLY LYS SER ALA ASP SEQRES 7 A 105 ILE HIS TYR GLN VAL SER VAL ASP CYS LYS ALA GLY MET SEQRES 8 A 105 ALA GLU TYR GLN ARG ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 9 A 105 HIS HELIX 1 1 ASP A 39 GLN A 53 1 15 HELIX 2 2 SER A 76 ILE A 80 5 5 SHEET 1 A 2 ALA A 73 TRP A 74 0 SHEET 2 A 2 THR A 92 VAL A 93 -1 O THR A 92 N TRP A 74 SHEET 1 B 4 GLN A 81 LYS A 83 0 SHEET 2 B 4 LYS A 86 VAL A 89 -1 O SER A 88 N GLN A 81 SHEET 3 B 4 VAL A 104 ASP A 107 -1 O VAL A 106 N TRP A 87 SHEET 4 B 4 MET A 112 GLU A 114 -1 O GLU A 114 N SER A 105 SSBOND 1 CYS A 35 CYS A 108 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1