data_2LQZ
# 
_entry.id   2LQZ 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2LQZ         pdb_00002lqz 10.2210/pdb2lqz/pdb 
RCSB  RCSB102723   ?            ?                   
BMRB  18336        ?            10.13018/BMR18336   
WWPDB D_1000102723 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2012-08-01 
2 'Structure model' 1 1 2012-11-07 
3 'Structure model' 1 2 2023-06-14 
4 'Structure model' 1 3 2024-05-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references' 
2 3 'Structure model' 'Database references' 
3 3 'Structure model' Other                 
4 4 'Structure model' 'Data collection'     
5 4 'Structure model' 'Database references' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' database_2           
2 3 'Structure model' pdbx_database_status 
3 4 'Structure model' chem_comp_atom       
4 4 'Structure model' chem_comp_bond       
5 4 'Structure model' database_2           
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                       
2 3 'Structure model' '_database_2.pdbx_database_accession'        
3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 
4 4 'Structure model' '_database_2.pdbx_DOI'                       
# 
_pdbx_database_status.deposit_site                    BMRB 
_pdbx_database_status.entry_id                        2LQZ 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.recvd_initial_deposition_date   2012-03-19 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  REL 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            REL 
# 
_pdbx_database_related.db_id          18336 
_pdbx_database_related.db_name        BMRB 
_pdbx_database_related.content_type   unspecified 
_pdbx_database_related.details        . 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Harjes, E.J.'   1 
'Matsuo, H.J.'   2 
'Kitamura, A.J.' 3 
# 
_citation.id                        primary 
_citation.title                     'Structure of the RNA claw of the DNA packaging motor of bacteriophage 29.' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            40 
_citation.page_first                9953 
_citation.page_last                 9963 
_citation.year                      2012 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   22879380 
_citation.pdbx_database_id_DOI      10.1093/nar/gks724 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Harjes, E.'    1 ? 
primary 'Kitamura, A.'  2 ? 
primary 'Zhao, W.'      3 ? 
primary 'Morais, M.C.'  4 ? 
primary 'Jardine, P.J.' 5 ? 
primary 'Grimes, S.'    6 ? 
primary 'Matsuo, H.'    7 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           'RNA (27-MER)' 
_entity.formula_weight             8586.128 
_entity.pdbx_number_of_molecules   1 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       GGACUUCCAUUGCUUCGGCAAAAGUCC 
_entity_poly.pdbx_seq_one_letter_code_can   GGACUUCCAUUGCUUCGGCAAAAGUCC 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G n 
1 2  G n 
1 3  A n 
1 4  C n 
1 5  U n 
1 6  U n 
1 7  C n 
1 8  C n 
1 9  A n 
1 10 U n 
1 11 U n 
1 12 G n 
1 13 C n 
1 14 U n 
1 15 U n 
1 16 C n 
1 17 G n 
1 18 G n 
1 19 C n 
1 20 A n 
1 21 A n 
1 22 A n 
1 23 A n 
1 24 G n 
1 25 U n 
1 26 C n 
1 27 C n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G 1  1  1  G GUA A . n 
A 1 2  G 2  2  2  G GUA A . n 
A 1 3  A 3  3  3  A ADE A . n 
A 1 4  C 4  4  4  C CYT A . n 
A 1 5  U 5  5  5  U URI A . n 
A 1 6  U 6  6  6  U URI A . n 
A 1 7  C 7  7  7  C CYT A . n 
A 1 8  C 8  8  8  C CYT A . n 
A 1 9  A 9  9  9  A ADE A . n 
A 1 10 U 10 10 10 U URI A . n 
A 1 11 U 11 11 11 U URI A . n 
A 1 12 G 12 12 12 G GUA A . n 
A 1 13 C 13 13 13 C CYT A . n 
A 1 14 U 14 14 14 U URI A . n 
A 1 15 U 15 15 15 U URI A . n 
A 1 16 C 16 16 16 C CYT A . n 
A 1 17 G 17 17 17 G GUA A . n 
A 1 18 G 18 18 18 G GUA A . n 
A 1 19 C 19 19 19 C CYT A . n 
A 1 20 A 20 20 20 A ADE A . n 
A 1 21 A 21 21 21 A ADE A . n 
A 1 22 A 22 22 22 A ADE A . n 
A 1 23 A 23 23 23 A ADE A . n 
A 1 24 G 24 24 24 G GUA A . n 
A 1 25 U 25 25 25 U URI A . n 
A 1 26 C 26 26 26 C CYT A . n 
A 1 27 C 27 27 27 C CYT A . n 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.crystals_number            ? 
_exptl.details                    ? 
_exptl.entry_id                   2LQZ 
_exptl.method                     'SOLUTION NMR' 
_exptl.method_details             ? 
# 
_struct.entry_id                  2LQZ 
_struct.title                     'Structure of the RNA claw of the DNA packaging motor of bacteriophage 29' 
_struct.pdbx_model_details        'closest to the average, model 1' 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2LQZ 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'RNA, bulge' 
# 
_struct_asym.id                            A 
_struct_asym.pdbx_blank_PDB_chainid_flag   N 
_struct_asym.pdbx_modified                 N 
_struct_asym.entity_id                     1 
_struct_asym.details                       ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2LQZ 
_struct_ref.pdbx_db_accession          2LQZ 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              2LQZ 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 27 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             2LQZ 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  27 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       27 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A G 1  N1 ? ? ? 1_555 A C 27 N3 ? ? A G 1  A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog2  hydrog ? ? A G 1  N2 ? ? ? 1_555 A C 27 O2 ? ? A G 1  A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog3  hydrog ? ? A G 1  O6 ? ? ? 1_555 A C 27 N4 ? ? A G 1  A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog4  hydrog ? ? A G 2  N1 ? ? ? 1_555 A C 26 N3 ? ? A G 2  A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog5  hydrog ? ? A G 2  N2 ? ? ? 1_555 A C 26 O2 ? ? A G 2  A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog6  hydrog ? ? A G 2  O6 ? ? ? 1_555 A C 26 N4 ? ? A G 2  A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog7  hydrog ? ? A A 3  N1 ? ? ? 1_555 A U 25 N3 ? ? A A 3  A U 25 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog8  hydrog ? ? A A 3  N6 ? ? ? 1_555 A U 25 O4 ? ? A A 3  A U 25 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog9  hydrog ? ? A C 4  N3 ? ? ? 1_555 A G 24 N1 ? ? A C 4  A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog10 hydrog ? ? A C 4  N4 ? ? ? 1_555 A G 24 O6 ? ? A C 4  A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog11 hydrog ? ? A C 4  O2 ? ? ? 1_555 A G 24 N2 ? ? A C 4  A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog12 hydrog ? ? A U 5  O2 ? ? ? 1_555 A A 9  N6 ? ? A U 5  A A 9  1_555 ? ? ? ? ? ? 'U-A PAIR'    ? ? ? 
hydrog13 hydrog ? ? A U 5  N3 ? ? ? 1_555 A A 23 N1 ? ? A U 5  A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog14 hydrog ? ? A U 5  O4 ? ? ? 1_555 A A 23 N6 ? ? A U 5  A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog15 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 21 N1 ? ? A U 10 A A 21 1_555 ? ? ? ? ? ? 'U-A PAIR'    ? ? ? 
hydrog16 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog17 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog18 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 12 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog19 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 12 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog20 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 12 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog21 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog22 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog23 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog24 hydrog ? ? A U 14 O2 ? ? ? 1_555 A G 17 N1 ? ? A U 14 A G 17 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 3 O2     A U 5  ? ? H61   A A 9  ? ? 1.57 
2 5 "HO2'" A A 21 ? ? "O5'" A A 22 ? ? 1.57 
# 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'structures with the lowest energy' 
_pdbx_nmr_ensemble.conformers_calculated_total_number            50 
_pdbx_nmr_ensemble.conformers_submitted_total_number             9 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.entry_id                                      2LQZ 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.entry_id             2LQZ 
_pdbx_nmr_representative.selection_criteria   'closest to the average' 
# 
_pdbx_nmr_sample_details.contents         '300 uM [U-100% 13C; U-100% 15N] RNA (27-MER), 90% H2O/10% D2O' 
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.solvent_system   '90% H2O/10% D2O' 
# 
_pdbx_nmr_exptl_sample.component             'RNA (27-MER)-1' 
_pdbx_nmr_exptl_sample.concentration         300 
_pdbx_nmr_exptl_sample.concentration_range   ? 
_pdbx_nmr_exptl_sample.concentration_units   uM 
_pdbx_nmr_exptl_sample.isotopic_labeling     '[U-100% 13C; U-100% 15N]' 
_pdbx_nmr_exptl_sample.solution_id           1 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      50 
_pdbx_nmr_exptl_sample_conditions.pH                  6.5 
_pdbx_nmr_exptl_sample_conditions.pressure            ambient 
_pdbx_nmr_exptl_sample_conditions.pressure_units      ? 
_pdbx_nmr_exptl_sample_conditions.temperature         298 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
loop_
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.solution_id 
_pdbx_nmr_exptl.type 
1 1 1 '2D 1H-1H NOESY'           
1 2 1 '2D 1H-15N HSQC'           
1 3 1 '2D 1H-13C HSQC aliphatic' 
1 4 1 '2D 1H-13C HSQC aromatic'  
1 5 1 '2D DQF-COSY'              
# 
_pdbx_nmr_constraints.disulfide_bond_constraints_total_count        ? 
_pdbx_nmr_constraints.entry_id                                      2LQZ 
_pdbx_nmr_constraints.hydrogen_bond_constraints_total_count         ? 
_pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count        12 
_pdbx_nmr_constraints.NA_beta-angle_constraints_total_count         13 
_pdbx_nmr_constraints.NA_chi-angle_constraints_total_count          12 
_pdbx_nmr_constraints.NA_delta-angle_constraints_total_count        16 
_pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count      12 
_pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count        13 
_pdbx_nmr_constraints.NA_other-angle_constraints_total_count        29 
_pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count       99 
_pdbx_nmr_constraints.NOE_constraints_total                         429 
_pdbx_nmr_constraints.NOE_interentity_total_count                   ? 
_pdbx_nmr_constraints.NOE_interproton_distance_evaluation           ? 
_pdbx_nmr_constraints.NOE_intraresidue_total_count                  136 
_pdbx_nmr_constraints.NOE_long_range_total_count                    68 
_pdbx_nmr_constraints.NOE_medium_range_total_count                  33 
_pdbx_nmr_constraints.NOE_motional_averaging_correction             ? 
_pdbx_nmr_constraints.NOE_pseudoatom_corrections                    ? 
_pdbx_nmr_constraints.NOE_sequential_total_count                    192 
_pdbx_nmr_constraints.protein_chi_angle_constraints_total_count     ? 
_pdbx_nmr_constraints.protein_other_angle_constraints_total_count   ? 
_pdbx_nmr_constraints.protein_phi_angle_constraints_total_count     ? 
_pdbx_nmr_constraints.protein_psi_angle_constraints_total_count     ? 
# 
_pdbx_nmr_refine.entry_id           2LQZ 
_pdbx_nmr_refine.method             'simulated annealing' 
_pdbx_nmr_refine.details            ? 
_pdbx_nmr_refine.software_ordinal   1 
# 
_pdbx_nmr_software.authors          'Brunger A. T. et.al.' 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.name             CNS 
_pdbx_nmr_software.version          ? 
_pdbx_nmr_software.ordinal          1 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A OP3    O N N 1   
A P      P N N 2   
A OP1    O N N 3   
A OP2    O N N 4   
A "O5'"  O N N 5   
A "C5'"  C N N 6   
A "C4'"  C N R 7   
A "O4'"  O N N 8   
A "C3'"  C N S 9   
A "O3'"  O N N 10  
A "C2'"  C N R 11  
A "O2'"  O N N 12  
A "C1'"  C N R 13  
A N9     N Y N 14  
A C8     C Y N 15  
A N7     N Y N 16  
A C5     C Y N 17  
A C6     C Y N 18  
A N6     N N N 19  
A N1     N Y N 20  
A C2     C Y N 21  
A N3     N Y N 22  
A C4     C Y N 23  
A HOP3   H N N 24  
A HOP2   H N N 25  
A "H5'"  H N N 26  
A "H5''" H N N 27  
A "H4'"  H N N 28  
A "H3'"  H N N 29  
A "HO3'" H N N 30  
A "H2'"  H N N 31  
A "HO2'" H N N 32  
A "H1'"  H N N 33  
A H8     H N N 34  
A H61    H N N 35  
A H62    H N N 36  
A H2     H N N 37  
C OP3    O N N 38  
C P      P N N 39  
C OP1    O N N 40  
C OP2    O N N 41  
C "O5'"  O N N 42  
C "C5'"  C N N 43  
C "C4'"  C N R 44  
C "O4'"  O N N 45  
C "C3'"  C N S 46  
C "O3'"  O N N 47  
C "C2'"  C N R 48  
C "O2'"  O N N 49  
C "C1'"  C N R 50  
C N1     N N N 51  
C C2     C N N 52  
C O2     O N N 53  
C N3     N N N 54  
C C4     C N N 55  
C N4     N N N 56  
C C5     C N N 57  
C C6     C N N 58  
C HOP3   H N N 59  
C HOP2   H N N 60  
C "H5'"  H N N 61  
C "H5''" H N N 62  
C "H4'"  H N N 63  
C "H3'"  H N N 64  
C "HO3'" H N N 65  
C "H2'"  H N N 66  
C "HO2'" H N N 67  
C "H1'"  H N N 68  
C H41    H N N 69  
C H42    H N N 70  
C H5     H N N 71  
C H6     H N N 72  
G OP3    O N N 73  
G P      P N N 74  
G OP1    O N N 75  
G OP2    O N N 76  
G "O5'"  O N N 77  
G "C5'"  C N N 78  
G "C4'"  C N R 79  
G "O4'"  O N N 80  
G "C3'"  C N S 81  
G "O3'"  O N N 82  
G "C2'"  C N R 83  
G "O2'"  O N N 84  
G "C1'"  C N R 85  
G N9     N Y N 86  
G C8     C Y N 87  
G N7     N Y N 88  
G C5     C Y N 89  
G C6     C N N 90  
G O6     O N N 91  
G N1     N N N 92  
G C2     C N N 93  
G N2     N N N 94  
G N3     N N N 95  
G C4     C Y N 96  
G HOP3   H N N 97  
G HOP2   H N N 98  
G "H5'"  H N N 99  
G "H5''" H N N 100 
G "H4'"  H N N 101 
G "H3'"  H N N 102 
G "HO3'" H N N 103 
G "H2'"  H N N 104 
G "HO2'" H N N 105 
G "H1'"  H N N 106 
G H8     H N N 107 
G H1     H N N 108 
G H21    H N N 109 
G H22    H N N 110 
U OP3    O N N 111 
U P      P N N 112 
U OP1    O N N 113 
U OP2    O N N 114 
U "O5'"  O N N 115 
U "C5'"  C N N 116 
U "C4'"  C N R 117 
U "O4'"  O N N 118 
U "C3'"  C N S 119 
U "O3'"  O N N 120 
U "C2'"  C N R 121 
U "O2'"  O N N 122 
U "C1'"  C N R 123 
U N1     N N N 124 
U C2     C N N 125 
U O2     O N N 126 
U N3     N N N 127 
U C4     C N N 128 
U O4     O N N 129 
U C5     C N N 130 
U C6     C N N 131 
U HOP3   H N N 132 
U HOP2   H N N 133 
U "H5'"  H N N 134 
U "H5''" H N N 135 
U "H4'"  H N N 136 
U "H3'"  H N N 137 
U "HO3'" H N N 138 
U "H2'"  H N N 139 
U "HO2'" H N N 140 
U "H1'"  H N N 141 
U H3     H N N 142 
U H5     H N N 143 
U H6     H N N 144 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A OP3   P      sing N N 1   
A OP3   HOP3   sing N N 2   
A P     OP1    doub N N 3   
A P     OP2    sing N N 4   
A P     "O5'"  sing N N 5   
A OP2   HOP2   sing N N 6   
A "O5'" "C5'"  sing N N 7   
A "C5'" "C4'"  sing N N 8   
A "C5'" "H5'"  sing N N 9   
A "C5'" "H5''" sing N N 10  
A "C4'" "O4'"  sing N N 11  
A "C4'" "C3'"  sing N N 12  
A "C4'" "H4'"  sing N N 13  
A "O4'" "C1'"  sing N N 14  
A "C3'" "O3'"  sing N N 15  
A "C3'" "C2'"  sing N N 16  
A "C3'" "H3'"  sing N N 17  
A "O3'" "HO3'" sing N N 18  
A "C2'" "O2'"  sing N N 19  
A "C2'" "C1'"  sing N N 20  
A "C2'" "H2'"  sing N N 21  
A "O2'" "HO2'" sing N N 22  
A "C1'" N9     sing N N 23  
A "C1'" "H1'"  sing N N 24  
A N9    C8     sing Y N 25  
A N9    C4     sing Y N 26  
A C8    N7     doub Y N 27  
A C8    H8     sing N N 28  
A N7    C5     sing Y N 29  
A C5    C6     sing Y N 30  
A C5    C4     doub Y N 31  
A C6    N6     sing N N 32  
A C6    N1     doub Y N 33  
A N6    H61    sing N N 34  
A N6    H62    sing N N 35  
A N1    C2     sing Y N 36  
A C2    N3     doub Y N 37  
A C2    H2     sing N N 38  
A N3    C4     sing Y N 39  
C OP3   P      sing N N 40  
C OP3   HOP3   sing N N 41  
C P     OP1    doub N N 42  
C P     OP2    sing N N 43  
C P     "O5'"  sing N N 44  
C OP2   HOP2   sing N N 45  
C "O5'" "C5'"  sing N N 46  
C "C5'" "C4'"  sing N N 47  
C "C5'" "H5'"  sing N N 48  
C "C5'" "H5''" sing N N 49  
C "C4'" "O4'"  sing N N 50  
C "C4'" "C3'"  sing N N 51  
C "C4'" "H4'"  sing N N 52  
C "O4'" "C1'"  sing N N 53  
C "C3'" "O3'"  sing N N 54  
C "C3'" "C2'"  sing N N 55  
C "C3'" "H3'"  sing N N 56  
C "O3'" "HO3'" sing N N 57  
C "C2'" "O2'"  sing N N 58  
C "C2'" "C1'"  sing N N 59  
C "C2'" "H2'"  sing N N 60  
C "O2'" "HO2'" sing N N 61  
C "C1'" N1     sing N N 62  
C "C1'" "H1'"  sing N N 63  
C N1    C2     sing N N 64  
C N1    C6     sing N N 65  
C C2    O2     doub N N 66  
C C2    N3     sing N N 67  
C N3    C4     doub N N 68  
C C4    N4     sing N N 69  
C C4    C5     sing N N 70  
C N4    H41    sing N N 71  
C N4    H42    sing N N 72  
C C5    C6     doub N N 73  
C C5    H5     sing N N 74  
C C6    H6     sing N N 75  
G OP3   P      sing N N 76  
G OP3   HOP3   sing N N 77  
G P     OP1    doub N N 78  
G P     OP2    sing N N 79  
G P     "O5'"  sing N N 80  
G OP2   HOP2   sing N N 81  
G "O5'" "C5'"  sing N N 82  
G "C5'" "C4'"  sing N N 83  
G "C5'" "H5'"  sing N N 84  
G "C5'" "H5''" sing N N 85  
G "C4'" "O4'"  sing N N 86  
G "C4'" "C3'"  sing N N 87  
G "C4'" "H4'"  sing N N 88  
G "O4'" "C1'"  sing N N 89  
G "C3'" "O3'"  sing N N 90  
G "C3'" "C2'"  sing N N 91  
G "C3'" "H3'"  sing N N 92  
G "O3'" "HO3'" sing N N 93  
G "C2'" "O2'"  sing N N 94  
G "C2'" "C1'"  sing N N 95  
G "C2'" "H2'"  sing N N 96  
G "O2'" "HO2'" sing N N 97  
G "C1'" N9     sing N N 98  
G "C1'" "H1'"  sing N N 99  
G N9    C8     sing Y N 100 
G N9    C4     sing Y N 101 
G C8    N7     doub Y N 102 
G C8    H8     sing N N 103 
G N7    C5     sing Y N 104 
G C5    C6     sing N N 105 
G C5    C4     doub Y N 106 
G C6    O6     doub N N 107 
G C6    N1     sing N N 108 
G N1    C2     sing N N 109 
G N1    H1     sing N N 110 
G C2    N2     sing N N 111 
G C2    N3     doub N N 112 
G N2    H21    sing N N 113 
G N2    H22    sing N N 114 
G N3    C4     sing N N 115 
U OP3   P      sing N N 116 
U OP3   HOP3   sing N N 117 
U P     OP1    doub N N 118 
U P     OP2    sing N N 119 
U P     "O5'"  sing N N 120 
U OP2   HOP2   sing N N 121 
U "O5'" "C5'"  sing N N 122 
U "C5'" "C4'"  sing N N 123 
U "C5'" "H5'"  sing N N 124 
U "C5'" "H5''" sing N N 125 
U "C4'" "O4'"  sing N N 126 
U "C4'" "C3'"  sing N N 127 
U "C4'" "H4'"  sing N N 128 
U "O4'" "C1'"  sing N N 129 
U "C3'" "O3'"  sing N N 130 
U "C3'" "C2'"  sing N N 131 
U "C3'" "H3'"  sing N N 132 
U "O3'" "HO3'" sing N N 133 
U "C2'" "O2'"  sing N N 134 
U "C2'" "C1'"  sing N N 135 
U "C2'" "H2'"  sing N N 136 
U "O2'" "HO2'" sing N N 137 
U "C1'" N1     sing N N 138 
U "C1'" "H1'"  sing N N 139 
U N1    C2     sing N N 140 
U N1    C6     sing N N 141 
U C2    O2     doub N N 142 
U C2    N3     sing N N 143 
U N3    C4     sing N N 144 
U N3    H3     sing N N 145 
U C4    O4     doub N N 146 
U C4    C5     sing N N 147 
U C5    C6     doub N N 148 
U C5    H5     sing N N 149 
U C6    H6     sing N N 150 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2LQZ 'double helix'         
2LQZ 'a-form double helix'  
2LQZ tetraloop              
2LQZ 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1  1_555 A C 27 1_555 -0.898 -0.402 -0.048 -6.137  -1.095  -0.718  1  A_G1:C27_A  A 1  ? A 27 ? 19 1 
1 A G 2  1_555 A C 26 1_555 0.282  -0.172 0.027  5.455   -2.680  -0.543  2  A_G2:C26_A  A 2  ? A 26 ? 19 1 
1 A A 3  1_555 A U 25 1_555 0.499  -0.215 0.066  -10.396 -24.303 -11.206 3  A_A3:U25_A  A 3  ? A 25 ? 20 1 
1 A C 4  1_555 A G 24 1_555 0.676  0.106  0.023  -19.083 -8.920  0.509   4  A_C4:G24_A  A 4  ? A 24 ? 19 1 
1 A U 5  1_555 A A 23 1_555 0.539  -0.212 -0.388 19.842  17.588  8.200   5  A_U5:A23_A  A 5  ? A 23 ? 20 1 
1 A U 10 1_555 A A 21 1_555 -0.833 -0.690 -1.577 10.894  -33.963 37.607  6  A_U10:A21_A A 10 ? A 21 ? ?  ? 
1 A U 11 1_555 A A 20 1_555 0.231  -0.255 0.275  -14.785 -18.443 -1.183  7  A_U11:A20_A A 11 ? A 20 ? 20 1 
1 A G 12 1_555 A C 19 1_555 -0.262 -0.240 -0.087 -2.338  -11.145 0.628   8  A_G12:C19_A A 12 ? A 19 ? 19 1 
1 A C 13 1_555 A G 18 1_555 0.435  -0.293 0.067  2.762   -1.473  -1.161  9  A_C13:G18_A A 13 ? A 18 ? 19 1 
1 A U 14 1_555 A G 17 1_555 0.934  -4.242 1.111  13.694  -5.285  -89.718 10 A_U14:G17_A A 14 ? A 17 ? ?  6 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1  1_555 A C 27 1_555 A G 2  1_555 A C 26 1_555 0.623  -0.606 3.108 -0.943  14.723 27.547 -3.668 -1.322 2.454 28.477 1.824  
31.181 1 AA_G1G2:C26C27_AA   A 1  ? A 27 ? A 2  ? A 26 ? 
1 A G 2  1_555 A C 26 1_555 A A 3  1_555 A U 25 1_555 -0.424 -0.916 4.783 5.421   -4.708 39.120 -0.543 1.551  4.760 -6.959 -8.014 
39.748 2 AA_G2A3:U25C26_AA   A 2  ? A 26 ? A 3  ? A 25 ? 
1 A A 3  1_555 A U 25 1_555 A C 4  1_555 A G 24 1_555 1.466  -1.068 3.854 1.561   12.079 25.960 -5.230 -2.567 3.136 25.198 -3.255 
28.630 3 AA_A3C4:G24U25_AA   A 3  ? A 25 ? A 4  ? A 24 ? 
1 A C 4  1_555 A G 24 1_555 A U 5  1_555 A A 23 1_555 0.484  -0.111 2.864 -2.682  -4.212 29.749 0.534  -1.407 2.799 -8.131 5.178  
30.156 4 AA_C4U5:A23G24_AA   A 4  ? A 24 ? A 5  ? A 23 ? 
1 A U 10 1_555 A A 21 1_555 A U 11 1_555 A A 20 1_555 -2.703 -0.514 4.436 -11.306 34.424 21.873 -5.916 2.051  2.643 56.901 18.688 
42.133 5 AA_U10U11:A20A21_AA A 10 ? A 21 ? A 11 ? A 20 ? 
1 A U 11 1_555 A A 20 1_555 A G 12 1_555 A C 19 1_555 0.080  -0.245 2.984 3.008   16.835 31.772 -2.559 0.256  2.540 28.332 -5.062 
35.978 6 AA_U11G12:C19A20_AA A 11 ? A 20 ? A 12 ? A 19 ? 
1 A G 12 1_555 A C 19 1_555 A C 13 1_555 A G 18 1_555 0.176  -0.348 3.109 -1.393  20.550 28.422 -3.446 -0.488 2.333 36.424 2.469  
34.975 7 AA_G12C13:G18C19_AA A 12 ? A 19 ? A 13 ? A 18 ? 
1 A C 13 1_555 A G 18 1_555 A U 14 1_555 A G 17 1_555 1.638  -1.332 3.703 -11.984 8.740  95.456 -1.059 -1.326 3.432 5.879  8.061  
96.324 8 AA_C13U14:G17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? 
# 
loop_
_pdbx_nmr_spectrometer.field_strength 
_pdbx_nmr_spectrometer.manufacturer 
_pdbx_nmr_spectrometer.model 
_pdbx_nmr_spectrometer.spectrometer_id 
_pdbx_nmr_spectrometer.type 
800 Varian INOVA 1 'Varian INOVA' 
600 Varian INOVA 2 'Varian INOVA' 
900 Varian INOVA 3 'Varian INOVA' 
# 
_atom_sites.entry_id                    2LQZ 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_