HEADER DE NOVO PROTEIN 19-MAR-12 2LR0 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP NTPASE TITLE 2 FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR136 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-LOOP NTPASE FOLD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,N.KOGA,R.KOGA,R.XIAO,H.LEE,H.JANJUA,E.KOHAN,T.B.ACTON, AUTHOR 2 J.K.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2LR0 1 REMARK REVDAT 1 04-JUL-12 2LR0 0 JRNL AUTH G.LIU,N.KOGA,R.KOGA,R.XIAO,H.LEE,H.JANJUA,E.KOHAN,T.B.ACTON, JRNL AUTH 2 J.K.EVERETT,D.BAKER,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP JRNL TITL 2 NTPASE FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 OR136 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102724. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16309 MM [U-100% 13C; U-100% REMARK 210 15N] OR136.001, 100 MM NACL, 5 REMARK 210 MM DTT, 0.02 % NAN3, 10 MM TRIS- REMARK 210 HCL PH 7.5, 90% H2O/10% D2O; REMARK 210 0.72 MM [U-100% 13C; U-100% 15N] REMARK 210 OR136.007, 100 MM NACL, 5 MM DTT, REMARK 210 0.02 % NAN3, 10 MM TRIS-HCL PH REMARK 210 7.5, 90% H2O/10% D2O; 0.72 MM [U- REMARK 210 100% 13C; U-100% 15N] OR136.006, REMARK 210 100 MM NACL, 5 MM DTT, 0.02 % REMARK 210 NAN3, 10 MM TRIS-HCL PH 7.5, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, SPARKY, REMARK 210 TALOS+, PALES, REDCAT, PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 108 -54.55 -139.53 REMARK 500 2 HIS A 130 86.85 -67.53 REMARK 500 2 HIS A 131 79.42 -103.23 REMARK 500 3 ASN A 33 -60.19 -108.41 REMARK 500 3 PHE A 51 98.46 -63.76 REMARK 500 3 THR A 108 -44.49 -135.82 REMARK 500 3 HIS A 130 14.96 -140.24 REMARK 500 3 HIS A 132 -43.70 -160.26 REMARK 500 6 GLU A 48 -34.65 -133.57 REMARK 500 6 HIS A 131 90.15 -65.57 REMARK 500 7 LYS A 49 37.19 -91.43 REMARK 500 7 ASN A 59 -50.41 -132.65 REMARK 500 7 GLU A 128 -70.46 -84.57 REMARK 500 8 THR A 108 -42.38 -148.90 REMARK 500 8 HIS A 129 30.80 -80.16 REMARK 500 8 HIS A 133 9.08 -153.10 REMARK 500 9 HIS A 130 102.43 -55.48 REMARK 500 10 THR A 108 -57.19 -131.34 REMARK 500 11 HIS A 132 92.15 -68.70 REMARK 500 12 GLU A 48 74.75 -102.51 REMARK 500 12 ASN A 59 16.25 -143.15 REMARK 500 12 GLU A 128 -75.35 -82.31 REMARK 500 13 THR A 108 -51.96 -128.64 REMARK 500 13 HIS A 132 19.56 53.14 REMARK 500 14 THR A 108 -30.03 -144.75 REMARK 500 14 HIS A 130 89.69 -33.12 REMARK 500 15 SER A 58 117.93 -164.58 REMARK 500 15 GLU A 128 -75.29 -70.19 REMARK 500 15 HIS A 129 32.82 -154.96 REMARK 500 15 HIS A 133 -11.20 -153.55 REMARK 500 16 PHE A 51 93.73 -63.40 REMARK 500 16 ASP A 84 142.66 -171.24 REMARK 500 16 THR A 108 -63.74 -122.73 REMARK 500 16 HIS A 131 104.60 -49.63 REMARK 500 17 LYS A 49 3.11 -163.40 REMARK 500 17 ASN A 50 171.20 67.85 REMARK 500 17 PHE A 51 103.98 -56.04 REMARK 500 17 THR A 108 -39.20 -130.52 REMARK 500 17 HIS A 129 90.73 67.97 REMARK 500 17 HIS A 130 -146.58 -97.47 REMARK 500 18 GLU A 52 146.37 -171.19 REMARK 500 18 SER A 58 120.39 -170.77 REMARK 500 18 ASP A 84 170.20 179.42 REMARK 500 18 ASP A 86 40.07 -86.67 REMARK 500 18 HIS A 129 68.66 -102.67 REMARK 500 18 HIS A 131 -38.77 -170.37 REMARK 500 19 SER A 58 115.88 -160.57 REMARK 500 19 HIS A 129 41.83 -92.52 REMARK 500 20 PHE A 51 94.93 -67.41 REMARK 500 20 ASP A 84 146.19 -171.16 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18337 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR136 RELATED DB: TARGETTRACK DBREF 2LR0 A 1 134 PDB 2LR0 2LR0 1 134 SEQRES 1 A 134 MET LYS ILE LEU ILE LEU ILE ASN THR ASN ASN ASP GLU SEQRES 2 A 134 LEU ILE LYS LYS ILE LYS LYS GLU VAL GLU ASN GLN GLY SEQRES 3 A 134 TYR GLN VAL ARG ASP VAL ASN ASP SER ASP GLU LEU LYS SEQRES 4 A 134 LYS GLU MET LYS LYS LEU ALA GLU GLU LYS ASN PHE GLU SEQRES 5 A 134 LYS ILE LEU ILE LYS SER ASN ASP LYS GLN LEU LEU LYS SEQRES 6 A 134 GLU MET LEU GLU LEU ILE SER LYS LEU GLY TYR LYS VAL SEQRES 7 A 134 PHE LEU LEU LEU ALA ASP GLN ASP GLU ASN GLU LEU GLU SEQRES 8 A 134 GLU PHE LYS ARG LYS ILE GLU SER GLN GLY TYR GLU VAL SEQRES 9 A 134 ARG LYS VAL THR ASP ASP GLU GLU ALA LEU LYS ILE VAL SEQRES 10 A 134 ARG GLU PHE MET GLN LYS ALA GLY SER LEU GLU HIS HIS SEQRES 11 A 134 HIS HIS HIS HIS HELIX 1 1 ASN A 11 ASN A 24 1 14 HELIX 2 2 ASP A 34 GLU A 48 1 15 HELIX 3 3 ASP A 60 SER A 72 1 13 HELIX 4 4 ASP A 86 GLN A 100 1 15 HELIX 5 5 ASP A 109 ALA A 124 1 16 HELIX 6 6 ALA A 124 HIS A 129 1 6 SHEET 1 A 5 GLN A 28 ASP A 31 0 SHEET 2 A 5 GLU A 52 LYS A 57 1 O LEU A 55 N ARG A 30 SHEET 3 A 5 LYS A 2 THR A 9 1 N ILE A 7 O ILE A 56 SHEET 4 A 5 VAL A 78 ALA A 83 1 O PHE A 79 N LEU A 4 SHEET 5 A 5 ARG A 105 VAL A 107 1 O VAL A 107 N LEU A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1