HEADER PROTEIN BINDING 28-MAR-12 2LRB OBSLTE 11-JUN-14 2LRB 2MP4 TITLE SOLUTION STRUCTURE OF ADF LIKE UNC-60A PROTEIN OF CAENORHABDITIS TITLE 2 ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-DEPOLYMERIZING FACTOR 1, ISOFORMS A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCOORDINATED PROTEIN 60; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: UNC-60, C38C3.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PETNH6 KEYWDS ADF/COFILIN PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.SHUKLA,R.YADAV,A.KABRA,D.KUMAR,S.ONO,A.ARORA REVDAT 2 11-JUN-14 2LRB 1 OBSLTE REVDAT 1 22-MAY-13 2LRB 0 JRNL AUTH V.SHUKLA,R.YADAV,A.JAIN,S.TRIPATHI,A.KABRA,D.KUMAR,S.ONO, JRNL AUTH 2 A.ARORA JRNL TITL NMR STRUCTURE AND BACKBONE DYNAMICS OF ADF LIKE UNC-60A JRNL TITL 2 PROTEIN FROM CAENORHABDITIS ELEGANS: ITS DIVERGENCE FROM JRNL TITL 3 CONVENTIONAL ADF/COFILIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS SOLVE REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB102735. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.65 MM [U-99% 15N] UNC-60A-1, REMARK 210 20 MM SODIUM PHOSPHATE-2, 50 MM REMARK 210 SODIUM CHLORIDE-3, 0.1 % SODIUM REMARK 210 AZIDE-4, 7 % [U-99% 2H] D2O-5, REMARK 210 93% H2O/7% D2O; 0.65 MM [U-99% REMARK 210 13C; U-99% 15N] UNC-60A-6, 20 MM REMARK 210 SODIUM PHOSPHATE-7, 50 MM SODIUM REMARK 210 CHLORIDE-8, 0.1 % SODIUM AZIDE-9, REMARK 210 7 % [U-99% 2H] D2O-10, 93% H2O/7% REMARK 210 D2O; 0.65 MM [U-99% 13C; U-99% REMARK 210 15N] UNC-60A-11, 20 MM SODIUM REMARK 210 PHOSPHATE-12, 50 MM SODIUM REMARK 210 CHLORIDE-13, 0.1 % SODIUM AZIDE- REMARK 210 14, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 2D 1H REMARK 210 -13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D CB(CGCDCE) REMARK 210 HE; 2D CB(CGCD)HD; 3D HNCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE3 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CARA, PSVS 1.4, ICING, REMARK 210 CYANA 3.0 REMARK 210 METHOD USED : WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 79 HH12 ARG A 81 1.56 REMARK 500 OD1 ASP A 54 HG SER A 58 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 26 -74.93 -123.42 REMARK 500 1 ASP A 54 -24.55 -178.01 REMARK 500 1 LYS A 60 -46.23 -168.77 REMARK 500 1 SER A 115 107.96 -50.39 REMARK 500 1 LYS A 152 -72.83 -45.08 REMARK 500 2 SER A 3 32.11 -94.81 REMARK 500 2 ASP A 57 -71.48 -98.56 REMARK 500 2 SER A 59 -49.35 74.62 REMARK 500 2 ALA A 96 -169.96 -122.56 REMARK 500 2 MET A 101 -176.51 -170.65 REMARK 500 2 ALA A 114 -167.15 -78.30 REMARK 500 2 THR A 135 -86.52 59.65 REMARK 500 2 ASP A 164 80.58 64.24 REMARK 500 3 PRO A 9 1.14 -65.88 REMARK 500 3 SER A 59 -34.85 65.65 REMARK 500 3 ASP A 75 -83.43 -62.53 REMARK 500 3 ARG A 93 96.92 -68.80 REMARK 500 3 VAL A 94 108.96 -162.17 REMARK 500 3 ALA A 114 -165.99 -164.21 REMARK 500 3 LEU A 133 -43.92 -143.42 REMARK 500 3 THR A 135 -81.30 65.31 REMARK 500 4 ASP A 54 -16.80 -149.70 REMARK 500 4 ASP A 57 -68.66 -92.66 REMARK 500 4 SER A 59 -60.65 72.47 REMARK 500 4 ASN A 76 33.85 -97.90 REMARK 500 4 LEU A 77 -80.44 51.02 REMARK 500 4 THR A 78 112.39 -161.59 REMARK 500 4 THR A 135 -78.24 65.60 REMARK 500 5 ASP A 57 -68.49 -93.39 REMARK 500 5 SER A 59 -52.67 73.23 REMARK 500 5 THR A 78 99.62 -168.07 REMARK 500 5 THR A 135 -87.96 63.17 REMARK 500 5 LYS A 152 -79.53 -39.51 REMARK 500 6 ASP A 57 -69.88 -94.96 REMARK 500 6 SER A 59 -55.85 69.65 REMARK 500 6 THR A 78 121.14 172.92 REMARK 500 6 LYS A 152 -72.38 -47.36 REMARK 500 7 ARG A 26 -164.22 -78.83 REMARK 500 7 THR A 51 -87.64 -50.97 REMARK 500 7 ASP A 53 97.75 -69.74 REMARK 500 7 ASP A 57 -73.43 -98.42 REMARK 500 7 SER A 59 -64.86 68.87 REMARK 500 7 LEU A 133 -40.91 -140.95 REMARK 500 8 ARG A 26 -71.88 -80.77 REMARK 500 8 ASP A 57 -71.30 -102.41 REMARK 500 8 SER A 59 -55.95 74.59 REMARK 500 8 SER A 144 -51.09 -152.55 REMARK 500 8 LYS A 152 -80.74 -51.86 REMARK 500 9 TYR A 25 -166.24 -103.75 REMARK 500 9 ASP A 54 -20.01 -160.84 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18356 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM A (IDENTIFIER: Q07750- REMARK 999 1) OF DATABASE ADF1_CAEEL DBREF 2LRB A 1 165 UNP Q07750 ADF1_CAEEL 1 165 SEQRES 1 A 165 MET SER SER GLY VAL MET VAL ASP PRO ASP VAL GLN THR SEQRES 2 A 165 SER PHE GLN LYS LEU SER GLU GLY ARG LYS GLU TYR ARG SEQRES 3 A 165 TYR ILE ILE PHE LYS ILE ASP GLU ASN LYS VAL ILE VAL SEQRES 4 A 165 GLU ALA ALA VAL THR GLN ASP GLN LEU GLY ILE THR GLY SEQRES 5 A 165 ASP ASP TYR ASP ASP SER SER LYS ALA ALA PHE ASP LYS SEQRES 6 A 165 PHE VAL GLU ASP VAL LYS SER ARG THR ASP ASN LEU THR SEQRES 7 A 165 ASP CYS ARG TYR ALA VAL PHE ASP PHE LYS PHE THR CYS SEQRES 8 A 165 SER ARG VAL GLY ALA GLY THR SER LYS MET ASP LYS ILE SEQRES 9 A 165 ILE PHE LEU GLN ILE CYS PRO ASP GLY ALA SER ILE LYS SEQRES 10 A 165 LYS LYS MET VAL TYR ALA SER SER ALA ALA ALA ILE LYS SEQRES 11 A 165 THR SER LEU GLY THR GLY LYS ILE LEU GLN PHE GLN VAL SEQRES 12 A 165 SER ASP GLU SER GLU MET SER HIS LYS GLU LEU LEU ASN SEQRES 13 A 165 LYS LEU GLY GLU LYS TYR GLY ASP HIS HELIX 1 1 PRO A 9 GLY A 21 1 13 HELIX 2 2 THR A 44 GLY A 49 5 6 HELIX 3 3 ASP A 54 SER A 59 1 6 HELIX 4 4 LYS A 60 VAL A 70 1 11 HELIX 5 5 LYS A 71 ASN A 76 1 6 HELIX 6 6 SER A 115 GLY A 134 1 20 HELIX 7 7 GLU A 146 MET A 149 5 4 HELIX 8 8 SER A 150 TYR A 162 1 13 SHEET 1 A 6 MET A 6 VAL A 7 0 SHEET 2 A 6 ILE A 38 ALA A 42 1 O VAL A 39 N MET A 6 SHEET 3 A 6 TYR A 27 ILE A 32 -1 N ILE A 29 O ALA A 42 SHEET 4 A 6 CYS A 80 PHE A 89 -1 O TYR A 82 N PHE A 30 SHEET 5 A 6 MET A 101 ILE A 109 -1 O ILE A 105 N PHE A 85 SHEET 6 A 6 LEU A 139 VAL A 143 1 O LEU A 139 N PHE A 106 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1