HEADER OXIDOREDUCTASE 28-MAR-12 2LRC TITLE STRUCTURE OF THIOREDOXIN 2 FROM PSEUDOMONAS AERUGINOSA PAO1 IN ITS TITLE 2 REDUCED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA2694; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PJF119EH KEYWDS THIOREDOXIN FOLD, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.B.GARCIN,C.KREUZER,O.BORNET,F.GUERLESQUIN REVDAT 2 14-JUN-23 2LRC 1 REMARK SEQADV REVDAT 1 17-APR-13 2LRC 0 JRNL AUTH E.B.GARCIN,O.BORNET,M.NOUAILLER,F.GUERLESQUIN, JRNL AUTH 2 C.SEBBAN-KREUZER JRNL TITL AN UNUSUAL THIOREDOXIN FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, AMBER REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, AND REMARK 3 KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102736. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HBHA(CO)NH; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 2D CBCACO; REMARK 210 3D HN(CA)CO; 3D HBHANH; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE; REMARK 210 3D HSQC-NOESY 13C; 3D HSQC-NOESY REMARK 210 15N REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 13 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 14 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 23.03 -78.44 REMARK 500 1 ARG A 90 81.77 54.62 REMARK 500 2 ARG A 62 152.60 72.65 REMARK 500 2 ARG A 63 -112.19 -98.94 REMARK 500 2 LEU A 72 -130.72 -96.78 REMARK 500 2 TRP A 73 -48.02 -138.57 REMARK 500 2 ALA A 86 -179.06 -171.22 REMARK 500 2 ARG A 90 77.02 56.53 REMARK 500 3 GLU A 8 41.98 -79.98 REMARK 500 3 ARG A 62 -132.47 52.18 REMARK 500 3 ARG A 63 155.89 75.71 REMARK 500 3 LEU A 72 -109.94 -101.60 REMARK 500 3 TRP A 73 -49.93 -147.23 REMARK 500 3 ARG A 90 79.42 56.05 REMARK 500 4 LYS A 2 -133.47 49.93 REMARK 500 4 ALA A 19 -39.42 -134.61 REMARK 500 4 ASP A 58 -150.41 -91.99 REMARK 500 4 LEU A 64 -44.15 71.97 REMARK 500 4 LEU A 72 -118.63 -112.60 REMARK 500 4 TRP A 73 -50.10 -151.58 REMARK 500 4 ALA A 86 -179.40 -171.63 REMARK 500 5 GLU A 8 36.44 -76.77 REMARK 500 5 ALA A 19 -41.44 -136.53 REMARK 500 5 ARG A 62 122.43 77.18 REMARK 500 5 ARG A 63 -131.70 -93.36 REMARK 500 5 LEU A 72 -116.76 -118.20 REMARK 500 5 TRP A 73 -49.92 -147.89 REMARK 500 5 ARG A 90 77.58 52.73 REMARK 500 6 GLU A 8 37.16 -85.19 REMARK 500 6 LEU A 64 -55.69 102.68 REMARK 500 6 LEU A 72 -119.62 -97.58 REMARK 500 6 TRP A 73 -50.15 -139.18 REMARK 500 6 ARG A 90 76.44 57.84 REMARK 500 7 GLU A 8 37.34 -76.11 REMARK 500 7 ALA A 19 -48.79 -148.29 REMARK 500 7 LEU A 72 -117.15 -103.88 REMARK 500 7 TRP A 73 -51.23 -142.41 REMARK 500 7 ARG A 90 81.33 56.74 REMARK 500 8 GLU A 8 31.05 -74.70 REMARK 500 8 ALA A 19 -36.18 -133.67 REMARK 500 8 ARG A 62 125.13 72.76 REMARK 500 8 ARG A 63 -111.07 -94.14 REMARK 500 8 LEU A 72 -129.46 -91.52 REMARK 500 8 TRP A 73 -49.20 -150.03 REMARK 500 8 ARG A 90 78.35 50.80 REMARK 500 9 GLU A 8 40.90 -88.65 REMARK 500 9 ALA A 19 -45.32 -142.82 REMARK 500 9 ARG A 63 159.28 69.47 REMARK 500 9 LEU A 64 -28.11 -151.15 REMARK 500 9 LYS A 71 -96.19 -80.38 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 17 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18130 RELATED DB: BMRB DBREF 2LRC A 1 108 UNP Q9I0E8 Q9I0E8_PSEAE 1 108 SEQADV 2LRC HIS A 109 UNP Q9I0E8 EXPRESSION TAG SEQADV 2LRC HIS A 110 UNP Q9I0E8 EXPRESSION TAG SEQADV 2LRC HIS A 111 UNP Q9I0E8 EXPRESSION TAG SEQADV 2LRC HIS A 112 UNP Q9I0E8 EXPRESSION TAG SEQADV 2LRC HIS A 113 UNP Q9I0E8 EXPRESSION TAG SEQADV 2LRC HIS A 114 UNP Q9I0E8 EXPRESSION TAG SEQRES 1 A 114 MET LYS THR ARG TYR SER ALA GLU ALA PRO ALA ARG ASP SEQRES 2 A 114 GLU LEU ASP ARG LEU ALA GLY PRO THR LEU VAL GLU PHE SEQRES 3 A 114 GLY THR ASP TRP CYS GLY HIS CYS GLN ALA ALA GLN PRO SEQRES 4 A 114 LEU LEU ALA GLU VAL PHE SER ASP TYR PRO GLU VAL GLY SEQRES 5 A 114 HIS LEU LYS VAL GLU ASP GLY PRO GLY ARG ARG LEU GLY SEQRES 6 A 114 ARG SER PHE GLN VAL LYS LEU TRP PRO THR PHE VAL PHE SEQRES 7 A 114 LEU ARG ASP GLY ARG GLU VAL ALA ARG VAL VAL ARG PRO SEQRES 8 A 114 GLY SER ALA SER VAL LEU GLU GLU ALA PHE GLU SER LEU SEQRES 9 A 114 VAL GLY GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 11 ASP A 16 1 6 HELIX 2 2 CYS A 31 SER A 46 1 16 HELIX 3 3 ARG A 63 PHE A 68 1 6 HELIX 4 4 SER A 93 GLY A 106 1 14 SHEET 1 A 4 GLY A 52 GLU A 57 0 SHEET 2 A 4 THR A 22 GLY A 27 1 N GLU A 25 O VAL A 56 SHEET 3 A 4 THR A 75 ARG A 80 -1 O THR A 75 N PHE A 26 SHEET 4 A 4 ARG A 83 VAL A 89 -1 O VAL A 85 N PHE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1