HEADER HYDROLASE 17-APR-12 2LS0 TITLE SOLUTION STRUCTURE OF THE TARGET RECOGNITION DOMAIN OF ZOOCIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZOOCIN A ENDOPEPTIDASE; COMPND 3 CHAIN: 1; COMPND 4 FRAGMENT: UNP RESIDUES 170-285; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS EQUI SUBSP. ZOOEPIDEMICUS; SOURCE 3 ORGANISM_TAXID: 40041; SOURCE 4 GENE: ZOOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PQE80L+384BP INSERT CONTAINING TRD KEYWDS SPECIFICITY, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.TIMKOVICH,Y.CHEN,R.S.SIMMONDS REVDAT 4 27-MAR-13 2LS0 1 JRNL REVDAT 3 30-JAN-13 2LS0 1 JRNL REVDAT 2 12-DEC-12 2LS0 1 JRNL REVDAT 1 05-DEC-12 2LS0 0 JRNL AUTH Y.CHEN,R.S.SIMMONDS,J.K.YOUNG,R.TIMKOVICH JRNL TITL SOLUTION STRUCTURE OF THE RECOMBINANT TARGET RECOGNITION JRNL TITL 2 DOMAIN OF ZOOCIN A. JRNL REF PROTEINS V. 81 722 2013 JRNL REFN ISSN 0887-3585 JRNL PMID 23184858 JRNL DOI 10.1002/PROT.24224 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNSSOLVE 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB102760. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.4 MM [U-95% 13C; U-90% 15N] REMARK 210 PROTEIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.1 MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.7-1.4 MM [U-90% REMARK 210 15N] PROTEIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.1 MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.7-1.4 MM REMARK 210 PROTEIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.1 MM SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.7-1.4 MM REMARK 210 PROTEIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.1 MM SODIUM AZIDE, REMARK 210 99.8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D DQF-COSY; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D 1H-13C NOESY; 3D CCC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.2, CNSSOLVE 1.2, REMARK 210 NMRPIPE, NMRDRAW, PIPP, NMRVIEW, REMARK 210 SPARKY, ARIA 2.0, PROCHECKNMR, REMARK 210 TALOS, PYMOL 1.5.0.1, DEEPVIEW/ REMARK 210 SWISS-PDBVIEWER REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA ASN 1 53 HB2 TRP 1 115 1.13 REMARK 500 O THR 1 64 H GLY 1 67 1.34 REMARK 500 O ASN 1 40 H VAL 1 44 1.45 REMARK 500 O ASP 1 122 H TYR 1 126 1.55 REMARK 500 O ASN 1 40 N VAL 1 44 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS 1 6 113.58 -168.09 REMARK 500 1 THR 1 15 -169.32 -70.03 REMARK 500 1 THR 1 19 58.27 -113.30 REMARK 500 1 LEU 1 21 94.30 -67.01 REMARK 500 1 ASP 1 28 114.63 -174.18 REMARK 500 1 THR 1 46 155.40 169.47 REMARK 500 1 ASP 1 47 56.96 72.33 REMARK 500 1 THR 1 49 91.98 -46.75 REMARK 500 1 ASP 1 52 -13.05 -153.68 REMARK 500 1 ALA 1 57 -35.16 -35.30 REMARK 500 1 SER 1 65 -35.66 -37.81 REMARK 500 1 THR 1 70 74.15 42.05 REMARK 500 1 GLN 1 73 -24.72 86.90 REMARK 500 1 SER 1 90 173.08 175.09 REMARK 500 1 SER 1 98 69.30 -64.99 REMARK 500 1 LEU 1 101 -153.53 -76.08 REMARK 500 1 THR 1 119 21.74 -63.34 REMARK 500 1 SER 1 120 125.26 -175.13 REMARK 500 2 ARG 1 2 96.18 66.13 REMARK 500 2 HIS 1 5 -76.99 73.58 REMARK 500 2 PRO 1 14 -167.59 -68.63 REMARK 500 2 LEU 1 21 89.82 -62.49 REMARK 500 2 ASP 1 28 114.98 -175.04 REMARK 500 2 THR 1 46 154.31 170.10 REMARK 500 2 ASP 1 47 56.35 72.47 REMARK 500 2 THR 1 49 92.31 -46.95 REMARK 500 2 ASP 1 52 -11.91 -152.72 REMARK 500 2 ALA 1 57 -34.47 -35.65 REMARK 500 2 SER 1 65 -35.48 -37.52 REMARK 500 2 THR 1 70 79.64 -160.56 REMARK 500 2 SER 1 90 172.68 172.30 REMARK 500 2 SER 1 98 69.61 -64.78 REMARK 500 2 LEU 1 101 -153.32 -77.86 REMARK 500 2 ASN 1 117 99.26 -65.24 REMARK 500 2 THR 1 119 24.40 -63.71 REMARK 500 2 SER 1 120 120.39 -176.63 REMARK 500 3 HIS 1 9 22.29 -169.81 REMARK 500 3 HIS 1 10 -66.17 -90.91 REMARK 500 3 PRO 1 14 42.79 -83.01 REMARK 500 3 THR 1 18 36.71 -154.84 REMARK 500 3 THR 1 19 30.30 -155.67 REMARK 500 3 LEU 1 21 95.32 -56.48 REMARK 500 3 LYS 1 22 165.24 -41.96 REMARK 500 3 ASP 1 28 116.54 -174.87 REMARK 500 3 THR 1 46 153.80 169.69 REMARK 500 3 ASP 1 47 56.33 72.41 REMARK 500 3 THR 1 49 91.88 -47.18 REMARK 500 3 ASP 1 52 -11.38 -154.89 REMARK 500 3 ALA 1 56 87.62 -69.78 REMARK 500 3 ALA 1 57 -35.77 -33.35 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18404 RELATED DB: BMRB DBREF 2LS0 1 13 128 UNP O54308 O54308_STRSZ 170 285 SEQADV 2LS0 MET 1 1 UNP O54308 EXPRESSION TAG SEQADV 2LS0 ARG 1 2 UNP O54308 EXPRESSION TAG SEQADV 2LS0 GLY 1 3 UNP O54308 EXPRESSION TAG SEQADV 2LS0 SER 1 4 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 5 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 6 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 7 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 8 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 9 UNP O54308 EXPRESSION TAG SEQADV 2LS0 HIS 1 10 UNP O54308 EXPRESSION TAG SEQADV 2LS0 GLY 1 11 UNP O54308 EXPRESSION TAG SEQADV 2LS0 SER 1 12 UNP O54308 EXPRESSION TAG SEQRES 1 1 128 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 1 128 PRO THR THR PRO THR THR ASN LEU LYS ILE TYR LYS VAL SEQRES 3 1 128 ASP ASP LEU GLN LYS ILE ASN GLY ILE TRP GLN VAL ARG SEQRES 4 1 128 ASN ASN ILE LEU VAL PRO THR ASP PHE THR TRP VAL ASP SEQRES 5 1 128 ASN GLY ILE ALA ALA ASP ASP VAL ILE GLU VAL THR SER SEQRES 6 1 128 ASN GLY THR ARG THR SER ASP GLN VAL LEU GLN LYS GLY SEQRES 7 1 128 GLY TYR PHE VAL ILE ASN PRO ASN ASN VAL LYS SER VAL SEQRES 8 1 128 GLY THR PRO MET LYS GLY SER GLY GLY LEU SER TRP ALA SEQRES 9 1 128 GLN VAL ASN PHE THR THR GLY GLY ASN VAL TRP LEU ASN SEQRES 10 1 128 THR THR SER LYS ASP ASN LEU LEU TYR GLY LYS HELIX 1 1 ASP 1 58 VAL 1 60 5 3 HELIX 2 2 SER 1 120 TYR 1 126 1 7 SHEET 1 A 3 GLN 1 30 ILE 1 32 0 SHEET 2 A 3 ILE 1 35 VAL 1 38 -1 O GLN 1 37 N GLN 1 30 SHEET 3 A 3 ILE 1 55 ALA 1 56 -1 O ILE 1 55 N VAL 1 38 SHEET 1 B 3 VAL 1 88 MET 1 95 0 SHEET 2 B 3 TRP 1 103 PHE 1 108 -1 O ASN 1 107 N LYS 1 89 SHEET 3 B 3 GLY 1 112 ASN 1 117 -1 O LEU 1 116 N ALA 1 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1