HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-APR-12 2LS5 TITLE SOLUTION STRUCTURE OF A PUTATIVE PROTEIN DISULFIDE ISOMERASE FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 53-200; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_1583; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, NEW YORK KEYWDS 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, PSI-BIOLOGY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, AUTHOR 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH,A.GIZZI, AUTHOR 3 B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE,B.MATIKAINEN,H.PATEL, AUTHOR 4 R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN,S.C.ALMO,NEW YORK STRUCTURAL AUTHOR 5 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 15-MAY-24 2LS5 1 REMARK REVDAT 2 14-JUN-23 2LS5 1 REMARK SEQADV REVDAT 1 09-MAY-12 2LS5 0 JRNL AUTH R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, JRNL AUTH 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH, JRNL AUTH 3 A.GIZZI,B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE, JRNL AUTH 4 B.MATIKAINEN,H.PATEL,R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN, JRNL AUTH 5 S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE PROTEIN DISULFIDE ISOMERASE JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2LS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102765. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PUTATIVE REMARK 210 PROTEIN DISULFIDE ISOMERASE, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 1 MM REMARK 210 EDTA, 90% H2O, 10% D2O; 1 MM [U- REMARK 210 13C; U-15N] PUTATIVE PROTEIN REMARK 210 DISULFIDE ISOMERASE, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 1 MM EDTA, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C CT REMARK 210 -HSQC; AROMATIC 13C CT-HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, NMRPIPE 5.4, VNMRJ REMARK 210 2.2D, TOPSPIN 2.1, CCPN 2.1.5, REMARK 210 MDDNMR 2.0, MDDGUI 1.0 REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3DS WERE ACQUIRED USING NUS WITH EITHER THE MDDNMR OR REMARK 210 MDDGUI APPROACH REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 22 HZ1 LYS A 24 1.52 REMARK 500 HZ3 LYS A 57 OD2 ASP A 58 1.56 REMARK 500 O GLU A 148 H GLU A 152 1.57 REMARK 500 OD2 ASP A 68 HH21 ARG A 123 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -79.89 -78.04 REMARK 500 1 ILE A 59 -63.67 -105.16 REMARK 500 1 ASP A 65 -75.99 -96.80 REMARK 500 1 ASN A 66 -72.19 66.56 REMARK 500 1 ALA A 67 -26.17 155.32 REMARK 500 1 ASP A 68 22.38 -140.04 REMARK 500 1 ASP A 77 -26.87 -160.10 REMARK 500 1 PRO A 79 -166.64 -68.75 REMARK 500 1 VAL A 92 85.98 28.66 REMARK 500 1 PRO A 100 98.40 -69.98 REMARK 500 1 ALA A 113 56.90 -119.57 REMARK 500 1 ILE A 115 -60.48 -152.54 REMARK 500 1 LEU A 133 50.07 39.86 REMARK 500 1 TYR A 134 -74.17 68.97 REMARK 500 1 ASN A 135 120.15 59.39 REMARK 500 1 GLU A 152 94.87 81.77 REMARK 500 1 HIS A 156 -46.50 70.70 REMARK 500 1 HIS A 158 -37.75 72.50 REMARK 500 2 SER A 2 -85.89 -84.11 REMARK 500 2 TRP A 60 -73.06 -69.86 REMARK 500 2 ASP A 65 -81.18 -84.18 REMARK 500 2 ASN A 66 -71.70 61.41 REMARK 500 2 ALA A 67 -26.88 173.06 REMARK 500 2 ASP A 68 28.29 -154.62 REMARK 500 2 ASP A 77 21.05 -145.61 REMARK 500 2 VAL A 92 87.17 43.93 REMARK 500 2 PRO A 100 87.07 -69.24 REMARK 500 2 THR A 116 93.97 71.77 REMARK 500 2 LEU A 133 104.95 46.32 REMARK 500 2 TYR A 134 112.61 -39.26 REMARK 500 2 GLU A 152 -175.16 45.86 REMARK 500 3 ASP A 58 -65.18 -106.12 REMARK 500 3 TRP A 60 -71.32 -75.33 REMARK 500 3 ASP A 65 -84.19 -92.47 REMARK 500 3 ASN A 66 -77.60 59.24 REMARK 500 3 ALA A 67 -23.01 156.31 REMARK 500 3 ASP A 77 -35.81 73.08 REMARK 500 3 VAL A 92 83.91 40.95 REMARK 500 3 ASP A 99 75.46 -119.35 REMARK 500 3 ALA A 113 40.88 -81.45 REMARK 500 3 LEU A 133 -172.18 49.28 REMARK 500 3 HIS A 154 138.61 62.51 REMARK 500 3 HIS A 157 29.00 -149.74 REMARK 500 3 HIS A 158 -57.36 -152.71 REMARK 500 4 ILE A 59 -60.54 -105.43 REMARK 500 4 LYS A 64 -92.38 56.65 REMARK 500 4 ASN A 66 -72.62 69.31 REMARK 500 4 ALA A 67 -30.62 164.80 REMARK 500 4 ASP A 77 -30.58 -153.18 REMARK 500 4 ARG A 111 -36.65 78.87 REMARK 500 REMARK 500 THIS ENTRY HAS 269 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011533 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 18411 RELATED DB: BMRB DBREF 2LS5 A 4 151 UNP Q8A7E1 Q8A7E1_BACTN 53 200 SEQADV 2LS5 MET A 1 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 SER A 2 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 LEU A 3 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 GLU A 152 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 GLY A 153 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 154 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 155 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 156 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 157 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 158 UNP Q8A7E1 EXPRESSION TAG SEQADV 2LS5 HIS A 159 UNP Q8A7E1 EXPRESSION TAG SEQRES 1 A 159 MET SER LEU GLY TYR ILE VAL ARG ILE GLY GLU MET ALA SEQRES 2 A 159 PRO ASP PHE THR ILE THR LEU THR ASP GLY LYS GLN VAL SEQRES 3 A 159 THR LEU SER SER LEU ARG GLY LYS VAL VAL MET LEU GLN SEQRES 4 A 159 PHE THR ALA SER TRP CYS GLY VAL CYS ARG LYS GLU MET SEQRES 5 A 159 PRO PHE ILE GLU LYS ASP ILE TRP LEU LYS HIS LYS ASP SEQRES 6 A 159 ASN ALA ASP PHE ALA LEU ILE GLY ILE ASP ARG ASP GLU SEQRES 7 A 159 PRO LEU GLU LYS VAL LEU ALA PHE ALA LYS SER THR GLY SEQRES 8 A 159 VAL THR TYR PRO LEU GLY LEU ASP PRO GLY ALA ASP ILE SEQRES 9 A 159 PHE ALA LYS TYR ALA LEU ARG ASP ALA GLY ILE THR ARG SEQRES 10 A 159 ASN VAL LEU ILE ASP ARG GLU GLY LYS ILE VAL LYS LEU SEQRES 11 A 159 THR ARG LEU TYR ASN GLU GLU GLU PHE ALA SER LEU VAL SEQRES 12 A 159 GLN GLN ILE ASN GLU MET LEU LYS GLU GLY HIS HIS HIS SEQRES 13 A 159 HIS HIS HIS HELIX 1 1 LEU A 28 ARG A 32 1 5 HELIX 2 2 VAL A 47 ILE A 59 1 13 HELIX 3 3 ILE A 59 LYS A 64 1 6 HELIX 4 4 PRO A 79 GLY A 91 1 13 HELIX 5 5 ALA A 102 LYS A 107 1 6 HELIX 6 6 ASN A 135 LEU A 150 1 16 SHEET 1 A 7 GLN A 25 THR A 27 0 SHEET 2 A 7 THR A 17 LEU A 20 -1 N ILE A 18 O VAL A 26 SHEET 3 A 7 LEU A 96 LEU A 98 -1 O LEU A 98 N THR A 19 SHEET 4 A 7 PHE A 69 ASP A 75 1 N GLY A 73 O GLY A 97 SHEET 5 A 7 VAL A 35 THR A 41 1 N GLN A 39 O ILE A 74 SHEET 6 A 7 ARG A 117 ILE A 121 -1 O ILE A 121 N VAL A 36 SHEET 7 A 7 ILE A 127 ARG A 132 -1 O VAL A 128 N LEU A 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1