HEADER HYDROLASE 20-APR-12 2LS6 TITLE SOLUTION NMR STRUCTURE OF A NON-CANONICAL GALACTOSE-BINDING CBM32 FROM TITLE 2 CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONOGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 660-800; COMPND 5 EC: 3.2.1.35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 STRAIN: ATCC 13124; SOURCE 5 GENE: CPF_0184, NAGH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS GLYCOSIDE HYDROLASES, CARBOHYRATE-BINDING MODULES, GALACTOSE, KEYWDS 2 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR J.M.GRONDIN,S.CHITAYAT,E.FICKO-BLEAN,A.B.BORASTON,S.P.SMITH REVDAT 4 12-FEB-14 2LS6 1 JRNL REVDAT 3 25-DEC-13 2LS6 1 JRNL REVDAT 2 04-DEC-13 2LS6 1 JRNL REVDAT 1 01-MAY-13 2LS6 0 JRNL AUTH J.M.GRONDIN,S.CHITAYAT,E.FICKO-BLEAN,S.HOULISTON, JRNL AUTH 2 C.H.ARROWSMITH,A.B.BORASTON,S.P.SMITH JRNL TITL AN UNUSUAL MODE OF GALACTOSE RECOGNITION BY A FAMILY 32 JRNL TITL 2 CARBOHYDRATE-BINDING MODULE. JRNL REF J.MOL.BIOL. V. 426 869 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24326248 JRNL DOI 10.1016/J.JMB.2013.11.029 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB102766. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 44 H ILE A 47 1.53 REMARK 500 O GLU A 116 H VAL A 118 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 6 -40.37 -176.57 REMARK 500 1 HIS A 8 168.96 60.69 REMARK 500 1 HIS A 10 -78.76 64.17 REMARK 500 1 SER A 11 -67.65 -139.88 REMARK 500 1 LEU A 14 -177.82 60.08 REMARK 500 1 ARG A 17 -69.57 68.39 REMARK 500 1 SER A 19 35.91 -98.60 REMARK 500 1 HIS A 20 -72.45 66.15 REMARK 500 1 MET A 21 96.84 58.68 REMARK 500 1 ALA A 22 -75.50 -153.64 REMARK 500 1 SER A 23 78.67 -109.04 REMARK 500 1 ASP A 24 109.54 -59.18 REMARK 500 1 SER A 34 129.54 -178.00 REMARK 500 1 GLN A 37 73.05 -67.75 REMARK 500 1 ASP A 45 -31.91 -38.65 REMARK 500 1 ASN A 50 63.04 63.67 REMARK 500 1 LYS A 59 -26.09 -164.03 REMARK 500 1 ASN A 60 -67.73 -10.01 REMARK 500 1 ARG A 63 122.88 171.23 REMARK 500 1 VAL A 66 137.37 60.91 REMARK 500 1 VAL A 72 120.60 -172.48 REMARK 500 1 ASN A 82 130.04 176.43 REMARK 500 1 SER A 91 -61.62 -104.20 REMARK 500 1 PRO A 93 -19.25 -47.80 REMARK 500 1 THR A 96 -164.98 -176.16 REMARK 500 1 MET A 97 163.07 -40.40 REMARK 500 1 LYS A 99 122.25 -176.05 REMARK 500 1 ALA A 100 167.04 172.64 REMARK 500 1 TYR A 104 132.53 -175.65 REMARK 500 1 ASP A 107 31.15 -95.08 REMARK 500 1 ARG A 109 -73.39 -138.97 REMARK 500 1 ASP A 113 153.58 -45.83 REMARK 500 1 LEU A 114 -65.44 -128.60 REMARK 500 1 GLU A 116 166.59 -44.29 REMARK 500 1 TYR A 120 32.64 -70.53 REMARK 500 1 ASP A 132 89.11 -61.05 REMARK 500 1 GLU A 144 63.19 -178.52 REMARK 500 1 ALA A 145 178.83 -51.53 REMARK 500 1 ASP A 155 129.69 179.01 REMARK 500 1 LYS A 160 91.75 -57.84 REMARK 500 1 GLU A 162 -72.87 -109.19 REMARK 500 2 SER A 3 -148.97 -146.94 REMARK 500 2 HIS A 5 -86.87 71.64 REMARK 500 2 HIS A 6 -58.24 -176.38 REMARK 500 2 HIS A 9 -77.55 67.69 REMARK 500 2 LEU A 14 177.85 64.30 REMARK 500 2 HIS A 20 -151.77 43.16 REMARK 500 2 MET A 21 164.42 71.58 REMARK 500 2 ASP A 24 109.52 63.35 REMARK 500 2 ASN A 26 -79.94 -69.25 REMARK 500 REMARK 500 THIS ENTRY HAS 843 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17694 RELATED DB: BMRB DBREF 2LS6 A 24 164 UNP Q0TUP2 Q0TUP2_CLOP1 660 800 SEQADV 2LS6 MET A 1 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 GLY A 2 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 3 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 4 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 5 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 6 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 7 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 8 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 9 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 10 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 11 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 12 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 GLY A 13 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 LEU A 14 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 VAL A 15 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 PRO A 16 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 ARG A 17 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 GLY A 18 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 19 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 HIS A 20 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 MET A 21 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 ALA A 22 UNP Q0TUP2 EXPRESSION TAG SEQADV 2LS6 SER A 23 UNP Q0TUP2 EXPRESSION TAG SEQRES 1 A 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 164 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP PRO ASN SEQRES 3 A 164 ARG ILE ILE ALA THR TYR ILE SER ASN ARG GLN ASP ALA SEQRES 4 A 164 PRO THR GLY ASN PRO ASP ASN ILE PHE ASP ASN ASN ALA SEQRES 5 A 164 SER THR GLU LEU VAL TYR LYS ASN PRO ASN ARG ILE ASP SEQRES 6 A 164 VAL GLY THR TYR VAL GLY VAL LYS TYR SER ASN PRO ILE SEQRES 7 A 164 THR LEU ASN ASN VAL GLU PHE LEU MET GLY ALA ASN SER SEQRES 8 A 164 ASN PRO ASN ASP THR MET GLN LYS ALA LYS ILE GLN TYR SEQRES 9 A 164 THR VAL ASP GLY ARG GLU TRP ILE ASP LEU GLU GLU GLY SEQRES 10 A 164 VAL GLU TYR THR MET PRO GLY ALA ILE LYS VAL GLU ASN SEQRES 11 A 164 LEU ASP LEU LYS VAL ARG GLY VAL ARG LEU ILE ALA THR SEQRES 12 A 164 GLU ALA ARG GLU ASN THR TRP LEU GLY VAL ARG ASP ILE SEQRES 13 A 164 ASN VAL ASN LYS LYS GLU ASP SER HELIX 1 1 PRO A 44 ASP A 49 1 6 SHEET 1 A 2 LEU A 56 TYR A 58 0 SHEET 2 A 2 LEU A 151 VAL A 153 -1 O VAL A 153 N LEU A 56 SHEET 1 B 3 GLY A 71 VAL A 72 0 SHEET 2 B 3 LEU A 133 ALA A 142 -1 O VAL A 138 N VAL A 72 SHEET 3 B 3 ILE A 78 LEU A 80 -1 N ILE A 78 O VAL A 135 SHEET 1 C 4 GLY A 71 VAL A 72 0 SHEET 2 C 4 LEU A 133 ALA A 142 -1 O VAL A 138 N VAL A 72 SHEET 3 C 4 ALA A 100 THR A 105 -1 N THR A 105 O ARG A 136 SHEET 4 C 4 TRP A 111 ASP A 113 -1 O ILE A 112 N TYR A 104 SHEET 1 D 2 VAL A 83 LEU A 86 0 SHEET 2 D 2 ASP A 155 VAL A 158 -1 O ASP A 155 N LEU A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1