HEADER APOPTOSIS 20-APR-12 2LS7 TITLE HIGH DEFINITION SOLUTION STRUCTURE OF PED/PEA-15 DEATH EFFECTOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASTROCYTIC PHOSPHOPROTEIN PEA-15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-90; COMPND 5 SYNONYM: 15 KDA PHOSPHOPROTEIN ENRICHED IN ASTROCYTES; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PEA15, PEA15A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE-9 KEYWDS SIX HELIX BUNDLE, DEATH EFFECTOR DOMAIN, DEATH DOMAIN SUPERFAMILY, KEYWDS 2 APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.C.TWOMEY,Y.WEI REVDAT 3 14-JUN-23 2LS7 1 REMARK REVDAT 2 27-APR-16 2LS7 1 ATOM DBREF REMARK SEQRES REVDAT 1 08-AUG-12 2LS7 0 JRNL AUTH E.C.TWOMEY,Y.WEI JRNL TITL HIGH-DEFINITION NMR STRUCTURE OF PED/PEA-15 DEATH EFFECTOR JRNL TITL 2 DOMAIN REVEALS DETAILS OF KEY POLAR SIDE CHAIN INTERACTIONS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 424 141 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22732408 JRNL DOI 10.1016/J.BBRC.2012.06.091 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.29 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102767. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PHOSPHOPROTEIN ENRICHED IN REMARK 210 ASTROCYTES 15A, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCA; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HNHA; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A 91 REMARK 465 GLU A 92 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 15 ARG A 85 NE ARG A 85 CZ 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 53 48.16 -87.39 REMARK 500 1 LEU A 55 102.21 -168.40 REMARK 500 1 ARG A 72 58.86 -149.11 REMARK 500 2 ASN A 53 40.99 -87.53 REMARK 500 2 LEU A 55 114.82 -164.59 REMARK 500 2 ARG A 72 51.49 -143.22 REMARK 500 3 ASN A 53 41.14 -90.61 REMARK 500 3 LEU A 55 103.67 -161.29 REMARK 500 3 ARG A 72 58.88 -146.24 REMARK 500 4 ASN A 53 43.66 -88.24 REMARK 500 4 LEU A 55 89.20 -165.01 REMARK 500 4 ASP A 56 -168.61 -72.69 REMARK 500 4 ARG A 72 55.67 -144.26 REMARK 500 5 ASN A 53 44.17 -84.84 REMARK 500 5 LEU A 55 107.41 -164.69 REMARK 500 5 ARG A 72 57.23 -144.70 REMARK 500 6 ASN A 53 43.64 -86.22 REMARK 500 6 LEU A 55 102.67 -167.38 REMARK 500 6 ARG A 72 61.48 -150.76 REMARK 500 6 PRO A 73 -6.89 -59.98 REMARK 500 7 ASN A 53 45.43 -87.08 REMARK 500 7 LEU A 55 116.32 -162.77 REMARK 500 7 ASP A 58 -32.02 -131.00 REMARK 500 7 ARG A 72 55.28 -145.86 REMARK 500 8 ASN A 53 43.58 -83.85 REMARK 500 8 LEU A 55 86.89 -162.39 REMARK 500 8 ASP A 56 -179.88 -68.62 REMARK 500 8 ARG A 72 56.35 -145.03 REMARK 500 9 ASN A 53 41.45 -87.28 REMARK 500 9 LEU A 55 96.61 -162.14 REMARK 500 9 ARG A 72 54.91 -145.71 REMARK 500 10 ASN A 53 40.98 -84.54 REMARK 500 10 LEU A 55 101.30 -166.59 REMARK 500 10 ARG A 72 59.25 -147.27 REMARK 500 11 ASN A 53 44.13 -87.49 REMARK 500 11 LEU A 55 108.74 -161.73 REMARK 500 11 PRO A 73 -9.83 -57.44 REMARK 500 12 ASN A 53 40.88 -89.19 REMARK 500 12 LEU A 55 111.45 -162.30 REMARK 500 12 LYS A 57 2.34 -60.93 REMARK 500 12 ASP A 58 -39.34 -130.83 REMARK 500 12 ARG A 72 55.76 -146.38 REMARK 500 13 LEU A 55 106.54 -162.94 REMARK 500 13 ARG A 72 59.52 -149.51 REMARK 500 13 PRO A 73 -6.19 -57.08 REMARK 500 14 HIS A 52 -169.09 -105.55 REMARK 500 14 ASN A 53 39.09 -90.72 REMARK 500 14 LEU A 55 105.54 -164.39 REMARK 500 15 ASN A 53 41.16 -88.46 REMARK 500 15 LEU A 55 101.48 -167.33 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 72 0.11 SIDE CHAIN REMARK 500 2 ARG A 71 0.07 SIDE CHAIN REMARK 500 4 ARG A 71 0.10 SIDE CHAIN REMARK 500 5 ARG A 71 0.08 SIDE CHAIN REMARK 500 5 ARG A 85 0.15 SIDE CHAIN REMARK 500 6 ARG A 72 0.14 SIDE CHAIN REMARK 500 6 ARG A 83 0.08 SIDE CHAIN REMARK 500 7 ARG A 71 0.10 SIDE CHAIN REMARK 500 10 ARG A 72 0.15 SIDE CHAIN REMARK 500 11 ARG A 72 0.17 SIDE CHAIN REMARK 500 11 ARG A 83 0.10 SIDE CHAIN REMARK 500 11 ARG A 85 0.10 SIDE CHAIN REMARK 500 12 ARG A 71 0.13 SIDE CHAIN REMARK 500 12 ARG A 85 0.08 SIDE CHAIN REMARK 500 13 ARG A 72 0.13 SIDE CHAIN REMARK 500 13 ARG A 83 0.08 SIDE CHAIN REMARK 500 13 ARG A 85 0.09 SIDE CHAIN REMARK 500 14 ARG A 72 0.13 SIDE CHAIN REMARK 500 14 ARG A 85 0.08 SIDE CHAIN REMARK 500 15 ARG A 71 0.11 SIDE CHAIN REMARK 500 15 ARG A 72 0.09 SIDE CHAIN REMARK 500 15 ARG A 85 0.08 SIDE CHAIN REMARK 500 18 ARG A 71 0.09 SIDE CHAIN REMARK 500 18 ARG A 72 0.14 SIDE CHAIN REMARK 500 18 ARG A 85 0.08 SIDE CHAIN REMARK 500 20 ARG A 72 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 11 ASP A 56 -10.49 REMARK 500 13 ASP A 56 -10.65 REMARK 500 15 ASP A 56 -10.01 REMARK 500 17 ASP A 56 -10.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N3K RELATED DB: PDB REMARK 900 RE-REFINED WITH RDCS AND EXPLICIT SOLVENT FOR DED ONLY REMARK 900 RELATED ID: 18412 RELATED DB: BMRB DBREF 2LS7 A 1 92 UNP Q62048 PEA15_MOUSE 1 92 SEQRES 1 A 92 MET ALA GLU TYR GLY THR LEU LEU GLN ASP LEU THR ASN SEQRES 2 A 92 ASN ILE THR LEU GLU ASP LEU GLU GLN LEU LYS SER ALA SEQRES 3 A 92 CYS LYS GLU ASP ILE PRO SER GLU LYS SER GLU GLU ILE SEQRES 4 A 92 THR THR GLY SER ALA TRP PHE SER PHE LEU GLU SER HIS SEQRES 5 A 92 ASN LYS LEU ASP LYS ASP ASN LEU SER TYR ILE GLU HIS SEQRES 6 A 92 ILE PHE GLU ILE SER ARG ARG PRO ASP LEU LEU THR MET SEQRES 7 A 92 VAL VAL ASP TYR ARG THR ARG VAL LEU LYS ILE SER GLU SEQRES 8 A 92 GLU HELIX 1 2 ALA A 2 ASN A 14 1 13 HELIX 2 2 LEU A 17 ALA A 26 1 10 HELIX 3 3 SER A 33 GLU A 37 1 5 HELIX 4 4 GLY A 42 SER A 51 1 10 HELIX 5 5 SER A 61 ILE A 69 1 9 HELIX 6 6 PRO A 73 ILE A 89 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1