HEADER MEMBRANE PROTEIN 26-APR-12 2LSB TITLE SOLUTION-STATE NMR STRUCTURE OF THE HUMAN PRION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-231; COMPND 5 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPROEXHTA KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BILJAN,G.ILC,G.GIANCIN,I.ZHUKOV,J.PLAVEC,G.LEGNAME REVDAT 3 14-JUN-23 2LSB 1 REMARK REVDAT 2 05-SEP-12 2LSB 1 JRNL REVDAT 1 27-JUN-12 2LSB 0 JRNL AUTH I.BILJAN,G.GIACHIN,G.ILC,I.ZHUKOV,J.PLAVEC,G.LEGNAME JRNL TITL STRUCTURAL BASIS FOR THE PROTECTIVE EFFECT OF THE HUMAN JRNL TITL 2 PRION PROTEIN CARRYING THE DOMINANT-NEGATIVE E219K JRNL TITL 3 POLYMORPHISM. JRNL REF BIOCHEM.J. V. 446 243 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22676969 JRNL DOI 10.1042/BJ20111940 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, YASARA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), KRIEGER, NABUURS AND SPRONK (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102771. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 1.5 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D 1H-15N NOESY; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 6 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 19 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 20 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 100 -154.85 -124.19 REMARK 500 1 ALA A 118 28.24 -143.03 REMARK 500 1 ARG A 136 88.27 49.44 REMARK 500 1 ASP A 167 19.08 52.22 REMARK 500 1 GLU A 168 18.17 57.99 REMARK 500 1 TYR A 169 37.74 -142.34 REMARK 500 1 SER A 230 32.31 -80.49 REMARK 500 2 ARG A 136 87.17 50.04 REMARK 500 2 TYR A 169 89.05 -67.78 REMARK 500 3 ARG A 136 87.11 52.47 REMARK 500 3 CYS A 179 -71.25 -46.71 REMARK 500 4 ARG A 136 91.06 47.14 REMARK 500 4 TYR A 169 40.60 -74.67 REMARK 500 5 THR A 95 3.95 -65.50 REMARK 500 5 ARG A 136 91.87 38.08 REMARK 500 5 TYR A 169 37.10 -74.23 REMARK 500 6 ALA A 117 44.84 -158.24 REMARK 500 6 ARG A 136 88.26 47.33 REMARK 500 6 GLU A 168 17.95 53.72 REMARK 500 7 HIS A 96 41.12 -80.23 REMARK 500 7 ARG A 136 89.72 49.00 REMARK 500 7 SER A 230 44.74 -77.60 REMARK 500 8 LEU A 125 -64.67 -96.14 REMARK 500 8 ARG A 136 92.18 44.68 REMARK 500 9 LYS A 104 155.84 65.90 REMARK 500 9 ARG A 136 92.22 45.46 REMARK 500 9 SER A 230 33.65 -76.37 REMARK 500 10 ARG A 136 90.28 46.22 REMARK 500 11 ARG A 136 86.75 51.50 REMARK 500 11 TYR A 169 46.63 -75.38 REMARK 500 11 CYS A 179 -72.16 -46.00 REMARK 500 12 TRP A 99 -8.21 57.82 REMARK 500 12 ARG A 136 92.30 39.87 REMARK 500 12 CYS A 179 -70.99 -46.56 REMARK 500 13 SER A 97 39.88 -81.10 REMARK 500 13 PRO A 105 -151.56 -82.78 REMARK 500 13 ALA A 113 42.29 -141.70 REMARK 500 13 ARG A 136 84.95 50.70 REMARK 500 13 GLU A 168 -73.51 -93.34 REMARK 500 13 TYR A 169 105.08 -170.21 REMARK 500 14 LYS A 101 155.08 62.25 REMARK 500 14 LYS A 104 154.81 65.58 REMARK 500 14 ARG A 136 89.64 46.81 REMARK 500 14 TYR A 169 90.69 -66.32 REMARK 500 15 LYS A 110 -41.51 -152.43 REMARK 500 15 ARG A 136 89.05 46.77 REMARK 500 15 SER A 230 85.86 -66.14 REMARK 500 16 ASN A 100 36.38 -92.80 REMARK 500 16 LYS A 101 156.57 57.61 REMARK 500 16 MET A 109 13.79 -141.71 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18426 RELATED DB: BMRB DBREF 2LSB A 90 231 UNP P04156 PRIO_HUMAN 90 231 SEQRES 1 A 142 GLY GLN GLY GLY GLY THR HIS SER GLN TRP ASN LYS PRO SEQRES 2 A 142 SER LYS PRO LYS THR ASN MET LYS HIS MET ALA GLY ALA SEQRES 3 A 142 ALA ALA ALA GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR SEQRES 4 A 142 MET LEU GLY SER ALA MET SER ARG PRO ILE ILE HIS PHE SEQRES 5 A 142 GLY SER ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 6 A 142 HIS ARG TYR PRO ASN GLN VAL TYR TYR ARG PRO MET ASP SEQRES 7 A 142 GLU TYR SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL SEQRES 8 A 142 ASN ILE THR ILE LYS GLN HIS THR VAL THR THR THR THR SEQRES 9 A 142 LYS GLY GLU ASN PHE THR GLU THR ASP VAL LYS MET MET SEQRES 10 A 142 GLU ARG VAL VAL GLU GLN MET CYS ILE THR GLN TYR GLU SEQRES 11 A 142 ARG GLU SER GLN ALA TYR TYR GLN ARG GLY SER SER HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 ASN A 171 THR A 193 1 23 HELIX 4 4 THR A 199 TYR A 226 1 28 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1