HEADER PROTEIN FIBRIL 30-APR-12 2LSH TITLE SOLUTION STRUCTURE OF THE CLASS I HYDROPHOBIN DEWA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE-WALL FUNGAL HYDROPHOBIN DEWA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 5 GENE: DEWA, AN8006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHUE KEYWDS HYDROPHOBIN, FUNCTIONAL AMYLOID, SURFACE ACTIVE PROTEIN, PROTEIN KEYWDS 2 FIBRIL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.K.MORRIS,A.H.KWAN,J.P.MACKAY,M.SUNDE REVDAT 2 14-JUN-23 2LSH 1 REMARK SEQADV REVDAT 1 21-NOV-12 2LSH 0 JRNL AUTH V.K.MORRIS,A.H.KWAN,M.SUNDE JRNL TITL ANALYSIS OF THE STRUCTURE AND CONFORMATIONAL STATES OF DEWA JRNL TITL 2 GIVES INSIGHT INTO THE ASSEMBLY OF THE FUNGAL HYDROPHOBINS JRNL REF J.MOL.BIOL. V. 6 83 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 23137797 JRNL DOI 10.1016/J.JMB.2012.10.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, ARIA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102777. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 5.5; 5.1 REMARK 210 IONIC STRENGTH : 40; 40 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 300-500 UM [U-99% 15N] DEWA-1, REMARK 210 0.1 MM DSS-2, 20 MM SODIUM REMARK 210 ACETATE-3, 95 % H20-4, 5 % D20-5, REMARK 210 95% H2O/5% D2O; 300-500 UM [U- REMARK 210 98% 13C; U-98% 15N] DEWA-6, 0.1 REMARK 210 MM DSS-7, 20 MM SODIUM ACETATE-8, REMARK 210 95 % H20-9, 5 % D20-10, 95% H2O/ REMARK 210 5% D2O; 300-500 UM [U-98% 13C; U- REMARK 210 98% 15N] DEWA-11, 0.1 MM DSS-12, REMARK 210 20 MM SODIUM ACETATE-13, 95 % REMARK 210 H20-14, 5 % D20-15, 100% D2O; REMARK 210 300-500 UM [U-98% 13C; U-98% 15N] REMARK 210 DEWA-16, 0.1 MM DSS-17, 20 MM REMARK 210 SODIUM ACETATE-18, 95 % H20-19, REMARK 210 5 % D20-20, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HN(CA)CO; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, TALOS, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 44 HB2 LEU A 47 1.32 REMARK 500 HZ1 LYS A 69 OE2 GLU A 100 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 -33.40 68.96 REMARK 500 1 THR A 14 -51.36 -153.62 REMARK 500 1 SER A 15 -78.06 66.73 REMARK 500 1 ALA A 16 -87.71 52.23 REMARK 500 1 SER A 60 97.89 -62.65 REMARK 500 1 LEU A 76 -53.87 -132.43 REMARK 500 1 LEU A 78 100.45 -54.04 REMARK 500 1 ASN A 93 -87.29 -150.57 REMARK 500 1 THR A 103 168.64 171.73 REMARK 500 1 ASP A 109 -81.06 -115.53 REMARK 500 1 ASN A 110 -53.54 76.67 REMARK 500 2 ALA A 6 -113.40 -102.61 REMARK 500 2 ASN A 9 -88.38 -101.13 REMARK 500 2 ALA A 10 89.91 -153.22 REMARK 500 2 ALA A 13 -46.81 -155.66 REMARK 500 2 LEU A 55 55.35 -107.66 REMARK 500 2 SER A 60 89.16 -61.05 REMARK 500 2 THR A 85 -167.64 -118.82 REMARK 500 2 ASN A 93 -106.21 -133.02 REMARK 500 2 THR A 103 167.59 69.79 REMARK 500 2 ALA A 113 117.35 -163.79 REMARK 500 2 THR A 115 98.43 62.96 REMARK 500 3 ALA A 7 79.85 -112.21 REMARK 500 3 ALA A 16 -73.44 60.72 REMARK 500 3 SER A 60 89.72 -65.43 REMARK 500 3 ASN A 93 -92.20 -148.21 REMARK 500 3 THR A 103 168.04 74.48 REMARK 500 3 ASN A 110 -79.56 64.66 REMARK 500 3 ALA A 111 54.38 -166.84 REMARK 500 3 THR A 115 -45.02 -166.48 REMARK 500 3 LYS A 116 -32.49 -177.89 REMARK 500 4 SER A 5 -90.89 -147.45 REMARK 500 4 ALA A 16 -56.64 67.30 REMARK 500 4 LEU A 55 -40.72 -136.54 REMARK 500 4 LEU A 56 134.34 69.13 REMARK 500 4 SER A 60 101.94 -52.28 REMARK 500 4 LEU A 78 92.34 -64.48 REMARK 500 4 THR A 85 -169.34 -117.15 REMARK 500 4 ASN A 93 -90.33 -155.02 REMARK 500 4 GLU A 100 -82.49 -51.63 REMARK 500 4 THR A 103 157.32 73.59 REMARK 500 4 ALA A 113 -154.91 -94.82 REMARK 500 5 ALA A 4 -20.19 74.36 REMARK 500 5 ALA A 6 79.09 53.54 REMARK 500 5 LYS A 11 -69.66 -130.80 REMARK 500 5 LEU A 12 -39.79 74.96 REMARK 500 5 LEU A 55 72.33 -117.15 REMARK 500 5 SER A 60 88.02 -61.07 REMARK 500 5 LEU A 78 96.15 -59.19 REMARK 500 5 GLU A 87 43.29 -81.57 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17596 RELATED DB: BMRB DBREF 2LSH A 2 118 UNP P52750 DEWA_EMENI 19 135 SEQADV 2LSH SER A 1 UNP P52750 EXPRESSION TAG SEQRES 1 A 118 SER LEU PRO ALA SER ALA ALA LYS ASN ALA LYS LEU ALA SEQRES 2 A 118 THR SER ALA ALA PHE ALA LYS GLN ALA GLU GLY THR THR SEQRES 3 A 118 CYS ASN VAL GLY SER ILE ALA CYS CYS ASN SER PRO ALA SEQRES 4 A 118 GLU THR ASN ASN ASP SER LEU LEU SER GLY LEU LEU GLY SEQRES 5 A 118 ALA GLY LEU LEU ASN GLY LEU SER GLY ASN THR GLY SER SEQRES 6 A 118 ALA CYS ALA LYS ALA SER LEU ILE ASP GLN LEU GLY LEU SEQRES 7 A 118 LEU ALA LEU VAL ASP HIS THR GLU GLU GLY PRO VAL CYS SEQRES 8 A 118 LYS ASN ILE VAL ALA CYS CYS PRO GLU GLY THR THR ASN SEQRES 9 A 118 CYS VAL ALA VAL ASP ASN ALA GLY ALA GLY THR LYS ALA SEQRES 10 A 118 GLU HELIX 1 1 ALA A 16 THR A 25 1 10 HELIX 2 2 ASN A 28 GLY A 30 5 3 HELIX 3 3 SER A 37 ASN A 42 1 6 HELIX 4 4 LEU A 46 LEU A 51 1 6 HELIX 5 5 ALA A 70 ASP A 74 1 5 SHEET 1 A 4 CYS A 67 LYS A 69 0 SHEET 2 A 4 ILE A 32 CYS A 35 -1 N CYS A 34 O ALA A 68 SHEET 3 A 4 ILE A 94 CYS A 97 -1 O ILE A 94 N CYS A 35 SHEET 4 A 4 VAL A 106 ALA A 107 -1 O VAL A 106 N CYS A 97 SHEET 1 B 2 VAL A 82 THR A 85 0 SHEET 2 B 2 GLY A 88 CYS A 91 -1 O VAL A 90 N ASP A 83 SSBOND 1 CYS A 27 CYS A 97 1555 1555 2.03 SSBOND 2 CYS A 34 CYS A 91 1555 1555 2.03 SSBOND 3 CYS A 35 CYS A 67 1555 1555 2.03 SSBOND 4 CYS A 98 CYS A 105 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1