HEADER TRANSFERASE 01-MAY-12 2LSI TITLE SOLUTION STRUCTURE OF POLYMERASE-INTERACTING DOMAIN OF HUMAN REV1 IN TITLE 2 COMPLEX WITH TRANSLESIONAL SYNTHESIS POLYMERASE KAPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN INTERACTION DOMAIN, UNP RESIDUES 1156-1251; COMPND 5 SYNONYM: ALPHA INTEGRIN-BINDING PROTEIN 80, AIBP80, REV1-LIKE COMPND 6 TERMINAL DEOXYCYTIDYL TRANSFERASE; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA POLYMERASE KAPPA; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 562-577; COMPND 13 SYNONYM: DINB PROTEIN, DINP; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REV1, REV1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS POLYMERASE-INTERACTING DOMAIN, REV1, POLYMERASE KAPPA, REV1- KEYWDS 2 INTERACTING MOTIF, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR D.LIU,K.RYU,J.KO,B.CHOI REVDAT 2 14-JUN-23 2LSI 1 REMARK SEQADV REVDAT 1 29-MAY-13 2LSI 0 JRNL AUTH D.LIU,K.RYU,J.KO,B.CHOI JRNL TITL INSIGHTS INTO THE SCAFFOLD MECHANISM OF HUMAN REV1 IN JRNL TITL 2 TRANSLESIONAL SYNTHESIS REVEALED BY THE STRUCTURAL STUDIES JRNL TITL 3 ON ITS POLYMERASE-INTERACTING DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102778. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY-1, 50MM BIS-TRIS-2, 100 REMARK 210 MM NACL-3, 1MM DTT-4, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY AROMATIC; 3D 1H REMARK 210 -13C NOESY ALIPHATIC; 3D 1H-15N REMARK 210 NOESY; 3D HCCH-TOCSY; 3D H(CCO) REMARK 210 NH; 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, EXPLICIT REMARK 210 WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 570 OE1 GLU B 574 1.59 REMARK 500 HZ3 LYS A 1214 OXT THR A 1251 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A1157 107.53 -57.34 REMARK 500 1 VAL A1221 -20.93 44.52 REMARK 500 2 THR A1243 -61.87 -90.36 REMARK 500 2 LYS B 564 -176.65 67.55 REMARK 500 3 ALA A1160 18.90 58.42 REMARK 500 3 ASP A1202 74.12 -101.93 REMARK 500 3 VAL A1221 -9.23 41.06 REMARK 500 3 LYS B 564 178.04 60.93 REMARK 500 3 LYS B 565 134.62 72.65 REMARK 500 3 ARG B 575 73.12 -116.53 REMARK 500 4 PRO A1157 109.14 -41.35 REMARK 500 4 ALA A1160 13.29 59.50 REMARK 500 4 ASP A1202 78.33 -100.34 REMARK 500 4 VAL A1221 -27.94 46.79 REMARK 500 4 LYS B 564 -60.90 67.25 REMARK 500 4 LYS B 565 164.16 60.86 REMARK 500 5 ALA A1160 18.86 58.90 REMARK 500 5 VAL A1221 -0.24 39.86 REMARK 500 5 HIS B 563 -173.16 66.47 REMARK 500 5 LYS B 576 74.34 -102.06 REMARK 500 6 VAL A1221 -29.18 48.01 REMARK 500 7 THR A1243 -61.64 -90.21 REMARK 500 7 HIS B 563 -75.65 -146.05 REMARK 500 7 LYS B 564 -154.17 47.55 REMARK 500 7 ARG B 575 53.31 -94.81 REMARK 500 8 ALA A1160 15.89 59.64 REMARK 500 8 ASP A1202 77.18 -100.26 REMARK 500 8 VAL A1221 -18.80 46.16 REMARK 500 8 THR A1243 -61.96 -90.13 REMARK 500 8 HIS B 563 97.33 66.49 REMARK 500 8 LYS B 576 73.73 -112.69 REMARK 500 9 PRO A1157 108.09 -40.48 REMARK 500 9 ASP A1202 77.51 -103.62 REMARK 500 10 THR A1243 -61.54 -90.49 REMARK 500 10 LYS B 565 89.57 69.24 REMARK 500 10 LYS B 576 64.77 -112.31 REMARK 500 11 ASP A1202 71.25 -103.69 REMARK 500 12 THR A1243 -62.15 -90.59 REMARK 500 12 LYS B 564 120.27 69.71 REMARK 500 13 ASP A1202 78.35 -104.85 REMARK 500 13 VAL A1221 -18.30 46.14 REMARK 500 13 THR A1243 -60.85 -90.84 REMARK 500 13 LYS B 564 135.89 69.58 REMARK 500 14 THR A1243 -61.82 -90.80 REMARK 500 14 HIS B 563 -82.42 -110.44 REMARK 500 14 ARG B 575 -79.10 -110.16 REMARK 500 14 LYS B 576 45.32 38.15 REMARK 500 15 LYS B 564 -171.57 60.19 REMARK 500 15 ARG B 575 33.91 -81.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18432 RELATED DB: BMRB DBREF 2LSI A 1156 1251 UNP Q9UBZ9 REV1_HUMAN 1156 1251 DBREF 2LSI B 562 577 UNP Q9UBT6 POLK_HUMAN 562 577 SEQADV 2LSI GLY A 1153 UNP Q9UBZ9 EXPRESSION TAG SEQADV 2LSI HIS A 1154 UNP Q9UBZ9 EXPRESSION TAG SEQADV 2LSI MET A 1155 UNP Q9UBZ9 EXPRESSION TAG SEQADV 2LSI GLY B 561 UNP Q9UBT6 EXPRESSION TAG SEQRES 1 A 99 GLY HIS MET ALA PRO ASN LEU ALA GLY ALA VAL GLU PHE SEQRES 2 A 99 ASN ASP VAL LYS THR LEU LEU ARG GLU TRP ILE THR THR SEQRES 3 A 99 ILE SER ASP PRO MET GLU GLU ASP ILE LEU GLN VAL VAL SEQRES 4 A 99 LYS TYR CYS THR ASP LEU ILE GLU GLU LYS ASP LEU GLU SEQRES 5 A 99 LYS LEU ASP LEU VAL ILE LYS TYR MET LYS ARG LEU MET SEQRES 6 A 99 GLN GLN SER VAL GLU SER VAL TRP ASN MET ALA PHE ASP SEQRES 7 A 99 PHE ILE LEU ASP ASN VAL GLN VAL VAL LEU GLN GLN THR SEQRES 8 A 99 TYR GLY SER THR LEU LYS VAL THR SEQRES 1 B 17 GLY SER HIS LYS LYS SER PHE PHE ASP LYS LYS ARG SER SEQRES 2 B 17 GLU ARG LYS TRP HELIX 1 1 GLU A 1164 ILE A 1179 1 16 HELIX 2 2 MET A 1183 GLU A 1200 1 18 HELIX 3 3 ASP A 1202 SER A 1220 1 19 HELIX 4 4 GLU A 1222 TYR A 1244 1 23 HELIX 5 5 SER B 566 ARG B 575 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1