HEADER PROTEIN BINDING/PROTEIN BINDING 01-MAY-12 2LSJ TITLE SOLUTION STRUCTURE OF THE MOUSE REV1 CTD IN COMPLEX WITH THE REV1- TITLE 2 INTERACTING REGION (RIR)OF POL KAPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE KAPPA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: REV1-INTERACTING REGION (RIR); COMPND 11 SYNONYM: DINB PROTEIN, DINP; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: REV1, REV1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL-C2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS REV1, RIR, POL KAPPA, TRANSLESION SYNTHESIS, TLS, CTD, PROTEIN KEYWDS 2 BINDING-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LIU,J.WOJTASZEK,P.ZHOU REVDAT 3 14-JUN-23 2LSJ 1 REMARK SEQADV REVDAT 2 19-JUN-13 2LSJ 1 JRNL REVDAT 1 20-JUN-12 2LSJ 0 JRNL AUTH J.WOJTASZEK,J.LIU,S.D'SOUZA,S.WANG,Y.XUE,G.C.WALKER,P.ZHOU JRNL TITL MULTIFACETED RECOGNITION OF VERTEBRATE REV1 BY TRANSLESION JRNL TITL 2 POLYMERASES ZETA AND KAPPA. JRNL REF J.BIOL.CHEM. V. 287 26400 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22700975 JRNL DOI 10.1074/JBC.M112.380998 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TALOS, CYANA REMARK 3 AUTHORS : CORNILESCU, DELAGLIO AND BAX (TALOS), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102779. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7-1 MM [U-100% 15N] PROTEIN, REMARK 210 0.7-1 MM [U-100% 15N] PEPTIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM DTT, 1 REMARK 210 MM EDTA, 90% H2O/10% D2O; 0.7-1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 0.7-1 MM [U-100% 13C; U- REMARK 210 100% 15N] PEPTIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM DTT, 1 MM EDTA, REMARK 210 90% H2O/10% D2O; 0.7-1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 0.7-1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PEPTIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 100 MM POTASSIUM CHLORIDE, 10 MM REMARK 210 DTT, 1 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D HN(COCA)CB; 3D HA(CA)NH; 3D REMARK 210 HA(CACO)NH; 3D HNCO; 3D (HCA) REMARK 210 CO(CA)NH; 4D HCCH-TOCSY; 4D REMARK 210 HCCONH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 4D 13C-HMQC- REMARK 210 NOESY-15N-HSQC; 4D 13C-HMQC- REMARK 210 NOESY-13C-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 CYS A 19 REMARK 465 PHE A 20 REMARK 465 ARG A 21 REMARK 465 PRO A 22 REMARK 465 SER B 201 REMARK 465 HIS B 202 REMARK 465 MET B 203 REMARK 465 SER B 204 REMARK 465 HIS B 205 REMARK 465 LYS B 206 REMARK 465 CYS B 221 REMARK 465 GLN B 222 REMARK 465 ASP B 223 REMARK 465 THR B 224 REMARK 465 SER B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 25 86.23 -69.77 REMARK 500 1 ASP A 49 79.13 -113.86 REMARK 500 1 THR A 111 -60.60 -95.81 REMARK 500 1 SER B 208 139.50 -177.05 REMARK 500 2 PRO A 25 85.06 -69.77 REMARK 500 2 SER A 88 -178.44 -57.57 REMARK 500 2 THR A 111 -60.73 -95.70 REMARK 500 3 PRO A 25 91.17 -69.80 REMARK 500 3 THR A 45 -54.81 -122.35 REMARK 500 3 ASP A 49 78.44 -112.25 REMARK 500 3 THR A 111 -60.85 -95.55 REMARK 500 4 PRO A 25 96.54 -69.80 REMARK 500 4 ASP A 49 78.32 -112.65 REMARK 500 4 SER A 88 -179.17 -57.36 REMARK 500 4 THR A 111 -60.89 -95.67 REMARK 500 4 SER B 208 141.10 -179.43 REMARK 500 5 PRO A 25 86.64 -69.72 REMARK 500 5 THR A 111 -60.48 -95.75 REMARK 500 5 SER B 208 146.70 -179.11 REMARK 500 6 PRO A 25 83.25 -69.78 REMARK 500 6 ASP A 49 78.69 -113.35 REMARK 500 6 THR A 111 -60.27 -96.13 REMARK 500 6 SER B 208 149.32 -178.16 REMARK 500 7 PRO A 25 96.10 -69.85 REMARK 500 7 SER A 88 177.05 -55.66 REMARK 500 7 THR A 111 -60.95 -95.77 REMARK 500 8 PRO A 25 91.63 -69.74 REMARK 500 8 SER A 88 176.98 -55.08 REMARK 500 8 SER B 208 140.90 -179.37 REMARK 500 9 PRO A 25 83.72 -69.72 REMARK 500 9 SER A 88 172.68 -53.46 REMARK 500 9 THR A 111 -60.92 -95.93 REMARK 500 9 SER B 219 50.18 -93.79 REMARK 500 10 PRO A 25 94.50 -69.75 REMARK 500 11 PRO A 25 93.87 -69.77 REMARK 500 11 THR A 111 -60.67 -95.53 REMARK 500 11 SER B 208 137.40 -176.24 REMARK 500 12 PRO A 25 96.11 -69.73 REMARK 500 13 PRO A 25 98.59 -69.74 REMARK 500 13 SER A 88 175.83 -54.96 REMARK 500 13 THR A 111 -60.66 -95.56 REMARK 500 14 PRO A 25 94.53 -69.70 REMARK 500 14 ASP A 49 78.03 -112.44 REMARK 500 14 SER A 88 -178.11 -68.26 REMARK 500 14 THR A 111 -60.59 -95.77 REMARK 500 15 PRO A 25 85.77 -69.77 REMARK 500 16 PRO A 25 98.12 -69.81 REMARK 500 16 SER A 88 -177.41 -64.76 REMARK 500 16 THR A 111 -60.64 -95.68 REMARK 500 16 SER B 219 -74.31 -95.04 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LSG RELATED DB: PDB REMARK 900 RELATED ID: 18433 RELATED DB: BMRB DBREF 2LSJ A 5 119 UNP Q920Q2 REV1_MOUSE 1135 1249 DBREF 2LSJ B 203 225 UNP Q9QUG2 POLK_MOUSE 560 582 SEQADV 2LSJ GLY A 1 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSJ SER A 2 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSJ GLY A 3 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSJ GLY A 4 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSJ SER B 201 UNP Q9QUG2 EXPRESSION TAG SEQADV 2LSJ HIS B 202 UNP Q9QUG2 EXPRESSION TAG SEQRES 1 A 119 GLY SER GLY GLY GLY ALA GLN ASP LEU SER SER LEU LEU SEQRES 2 A 119 PRO GLY GLN SER SER CYS PHE ARG PRO ALA ALA PRO ASN SEQRES 3 A 119 LEU ALA GLY ALA VAL GLU PHE SER ASP VAL LYS THR LEU SEQRES 4 A 119 LEU LYS GLU TRP ILE THR THR ILE SER ASP PRO MET GLU SEQRES 5 A 119 GLU ASP ILE LEU GLN VAL VAL ARG TYR CYS THR ASP LEU SEQRES 6 A 119 ILE GLU GLU LYS ASP LEU GLU LYS LEU ASP LEU VAL ILE SEQRES 7 A 119 LYS TYR MET LYS ARG LEU MET GLN GLN SER VAL GLU SER SEQRES 8 A 119 VAL TRP ASN MET ALA PHE ASP PHE ILE LEU ASP ASN VAL SEQRES 9 A 119 GLN VAL VAL LEU GLN GLN THR TYR GLY SER THR LEU LYS SEQRES 10 A 119 VAL THR SEQRES 1 B 25 SER HIS MET SER HIS LYS LYS SER PHE PHE ASP LYS LYS SEQRES 2 B 25 ARG SER GLU ARG ILE SER ASN CYS GLN ASP THR SER HELIX 1 1 GLU A 32 THR A 46 1 15 HELIX 2 2 MET A 51 LYS A 69 1 19 HELIX 3 3 ASP A 70 SER A 88 1 19 HELIX 4 4 SER A 91 GLN A 110 1 20 HELIX 5 5 SER B 208 SER B 219 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1