HEADER OXIDOREDUCTASE 04-MAY-12 2LST TITLE SOLUTION STRUCTURE OF A THIOREDOXIN FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-153; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 5 GENE: TT_C1057; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, NEW YORK STRUCTURAL GENOMICS RESEARCH KEYWDS 2 CONSORTIUM, OXIDOREDUCTASE, PSI-BIOLOGY, NYSGRC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, AUTHOR 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH,A.GIZZI, AUTHOR 3 B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE,B.MATIKAINEN,H.PATEL, AUTHOR 4 R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN,S.C.ALMO,NEW YORK STRUCTURAL AUTHOR 5 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 15-MAY-24 2LST 1 REMARK REVDAT 2 14-JUN-23 2LST 1 REMARK SEQADV REVDAT 1 16-MAY-12 2LST 0 JRNL AUTH R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, JRNL AUTH 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH, JRNL AUTH 3 A.GIZZI,B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE, JRNL AUTH 4 B.MATIKAINEN,H.PATEL,R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN, JRNL AUTH 5 S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF A THIOREDOXIN FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2LST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102789. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] REMARK 210 THIOREDOXIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 5 MM DTT, 1 MM EDTA, 90% H2O, REMARK 210 10% D2O; 0.5 MM [U-13C; U-15N] REMARK 210 THIOREDOXIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 5 MM DTT, 1 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C REMARK 210 HSQC; AROMATIC 13C HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.21, ARIA 2.3, CCPN 2.1.5, REMARK 210 NMRPIPE 5.4, VNMRJ 2.2D, TOPSPIN REMARK 210 1.3, MDDNMR 2.0, MDDGUI 1.0, REMARK 210 SIDER REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3DS COLLECTED USING NON-UNIFORM SAMPLING WITH THE REMARK 210 MDDNMR AND MDDGUI PROGRAMS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 69 HH21 ARG A 72 1.55 REMARK 500 HD1 HIS A 30 OD2 ASP A 63 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -75.16 -87.27 REMARK 500 1 PHE A 40 -69.39 -91.78 REMARK 500 1 ARG A 75 87.21 62.28 REMARK 500 1 PRO A 77 -138.65 -74.29 REMARK 500 1 ALA A 89 -77.59 66.46 REMARK 500 1 SER A 101 -73.29 69.64 REMARK 500 1 ARG A 102 156.69 68.14 REMARK 500 2 SER A 2 41.96 -145.48 REMARK 500 2 PRO A 32 -90.41 -83.70 REMARK 500 2 PHE A 40 -68.34 -92.30 REMARK 500 2 ARG A 75 79.10 63.08 REMARK 500 2 PRO A 77 -90.10 -65.56 REMARK 500 2 ALA A 89 -76.13 67.48 REMARK 500 2 SER A 101 -95.48 179.95 REMARK 500 2 ARG A 102 119.13 66.65 REMARK 500 2 CYS A 121 -55.72 -143.88 REMARK 500 2 HIS A 126 66.90 -163.34 REMARK 500 3 PRO A 32 -92.01 -81.11 REMARK 500 3 PHE A 40 -70.60 -90.32 REMARK 500 3 PRO A 77 -83.52 -61.56 REMARK 500 3 THR A 79 158.09 175.57 REMARK 500 3 ALA A 89 -76.80 68.01 REMARK 500 3 ALA A 120 37.36 -96.27 REMARK 500 3 GLU A 123 -167.85 -123.81 REMARK 500 3 HIS A 128 -41.91 -130.89 REMARK 500 4 SER A 2 62.69 -155.22 REMARK 500 4 PHE A 40 -70.64 -91.01 REMARK 500 4 ASP A 63 -33.32 -163.21 REMARK 500 4 ARG A 75 73.19 44.85 REMARK 500 4 THR A 79 138.94 71.62 REMARK 500 4 ALA A 89 -71.55 68.72 REMARK 500 4 GLU A 94 98.93 -69.78 REMARK 500 4 SER A 101 174.31 68.15 REMARK 500 4 GLU A 123 -62.87 68.87 REMARK 500 4 HIS A 127 79.65 -152.82 REMARK 500 4 HIS A 128 -30.25 72.28 REMARK 500 5 SER A 2 117.34 68.73 REMARK 500 5 HIS A 30 48.72 -94.42 REMARK 500 5 PRO A 32 -98.56 -58.93 REMARK 500 5 THR A 39 -61.58 -92.13 REMARK 500 5 PHE A 40 -70.58 -91.45 REMARK 500 5 ALA A 89 -65.49 70.66 REMARK 500 5 SER A 101 128.61 71.44 REMARK 500 5 HIS A 126 -30.90 -178.29 REMARK 500 6 PRO A 32 -105.34 -84.25 REMARK 500 6 PHE A 40 -70.32 -91.34 REMARK 500 6 ARG A 75 76.85 53.81 REMARK 500 6 ALA A 89 93.42 -53.59 REMARK 500 6 ALA A 91 -168.36 -176.95 REMARK 500 6 ALA A 120 -55.99 -157.49 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011484 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 18443 RELATED DB: BMRB DBREF 2LST A 4 122 UNP Q72IS5 Q72IS5_THET2 35 153 SEQADV 2LST MET A 1 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST SER A 2 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST LEU A 3 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST GLU A 123 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST GLY A 124 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 125 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 126 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 127 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 128 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 129 UNP Q72IS5 EXPRESSION TAG SEQADV 2LST HIS A 130 UNP Q72IS5 EXPRESSION TAG SEQRES 1 A 130 MET SER LEU ARG TRP TYR PRO TYR PRO GLU ALA LEU ALA SEQRES 2 A 130 LEU ALA GLN ALA HIS GLY ARG MET VAL MET VAL TYR PHE SEQRES 3 A 130 HIS SER GLU HIS CYS PRO TYR CYS GLN GLN MET ASN THR SEQRES 4 A 130 PHE VAL LEU SER ASP PRO GLY VAL SER ARG LEU LEU GLU SEQRES 5 A 130 ALA ARG PHE VAL VAL ALA SER VAL SER VAL ASP THR PRO SEQRES 6 A 130 GLU GLY GLN GLU LEU ALA ARG ARG TYR ARG VAL PRO GLY SEQRES 7 A 130 THR PRO THR PHE VAL PHE LEU VAL PRO LYS ALA GLY ALA SEQRES 8 A 130 TRP GLU GLU VAL GLY ARG LEU PHE GLY SER ARG PRO ARG SEQRES 9 A 130 ALA GLU PHE LEU LYS GLU LEU ARG GLN VAL CYS VAL LYS SEQRES 10 A 130 GLY GLY ALA CYS GLY GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 7 GLY A 19 1 13 HELIX 2 2 TYR A 33 PHE A 40 1 8 HELIX 3 3 ASP A 44 ARG A 54 1 11 HELIX 4 4 THR A 64 TYR A 74 1 11 HELIX 5 5 PRO A 103 CYS A 121 1 19 SHEET 1 A 5 TRP A 5 TYR A 6 0 SHEET 2 A 5 PHE A 55 SER A 61 1 O VAL A 57 N TYR A 6 SHEET 3 A 5 MET A 21 HIS A 27 1 N MET A 23 O ALA A 58 SHEET 4 A 5 THR A 81 LYS A 88 -1 O VAL A 83 N VAL A 24 SHEET 5 A 5 ALA A 91 PHE A 99 -1 O LEU A 98 N PHE A 82 CISPEP 1 THR A 79 PRO A 80 1 -1.92 CISPEP 2 THR A 79 PRO A 80 2 -3.13 CISPEP 3 THR A 79 PRO A 80 3 0.13 CISPEP 4 THR A 79 PRO A 80 4 0.87 CISPEP 5 THR A 79 PRO A 80 5 -0.60 CISPEP 6 THR A 79 PRO A 80 6 0.05 CISPEP 7 THR A 79 PRO A 80 7 -1.14 CISPEP 8 THR A 79 PRO A 80 8 -5.05 CISPEP 9 THR A 79 PRO A 80 9 0.57 CISPEP 10 THR A 79 PRO A 80 10 -1.82 CISPEP 11 THR A 79 PRO A 80 11 0.45 CISPEP 12 THR A 79 PRO A 80 12 -0.19 CISPEP 13 THR A 79 PRO A 80 13 1.42 CISPEP 14 THR A 79 PRO A 80 14 -3.36 CISPEP 15 THR A 79 PRO A 80 15 -4.87 CISPEP 16 THR A 79 PRO A 80 16 0.05 CISPEP 17 THR A 79 PRO A 80 17 4.73 CISPEP 18 THR A 79 PRO A 80 18 4.06 CISPEP 19 THR A 79 PRO A 80 19 1.57 CISPEP 20 THR A 79 PRO A 80 20 0.51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1