HEADER BLOOD CLOTTING 08-MAY-12 2LSW TITLE STRUCTURE, SULFATIDE-BINDING PROPERTIES, AND INHIBITION OF PLATELET TITLE 2 AGGREGATION BY A DISABLED-2-DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISABLED HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNIPROT RESIDUES 24-58; COMPND 5 SYNONYM: DOC-2, DIFFERENTIALLY-EXPRESSED PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAB2, DOC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS PLATELET AGGREGATION INHIBITOR, SULFATIDES, DODECYLPHOSPHOCHOLINE, KEYWDS 2 BLOOD CLOTTING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.XIAO REVDAT 4 14-JUN-23 2LSW 1 REMARK SEQADV REVDAT 3 21-NOV-12 2LSW 1 JRNL REVDAT 2 26-SEP-12 2LSW 1 JRNL REVDAT 1 19-SEP-12 2LSW 0 JRNL AUTH S.XIAO,J.J.CHARONKO,X.FU,A.SALMANZADEH,R.V.DAVALOS, JRNL AUTH 2 P.P.VLACHOS,C.V.FINKIELSTEIN,D.G.CAPELLUTO JRNL TITL STRUCTURE, SULFATIDE BINDING PROPERTIES, AND INHIBITION OF JRNL TITL 2 PLATELET AGGREGATION BY A DISABLED-2 PROTEIN-DERIVED JRNL TITL 3 PEPTIDE. JRNL REF J.BIOL.CHEM. V. 287 37691 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22977233 JRNL DOI 10.1074/JBC.M112.385609 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102792. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 50 UM [U-2H] DSS, 40 MM REMARK 210 POTASSIUM CHLORIDE, 1 MM SODIUM REMARK 210 AZIDE, 10 MM [U-99% 2H] CITRIC, REMARK 210 90% H2O/10% D2O; 50 UM [U-2H] REMARK 210 DSS, 40 MM POTASSIUM CHLORIDE, 1 REMARK 210 MM SODIUM AZIDE, 10 MM [U-99% 2H] REMARK 210 CITRIC, 90% H2O/10% D2O; 50 UM REMARK 210 [U-2H] DSS, 40 MM POTASSIUM REMARK 210 CHLORIDE, 1 MM SODIUM AZIDE, 10 REMARK 210 MM [U-99% 2H] CITRIC, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HN(CA)CO; 3D HNCO; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D 1H-15N NOESY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 50 H LEU A 54 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 99.26 -42.78 REMARK 500 1 LYS A 26 101.19 -178.68 REMARK 500 1 GLU A 27 87.32 41.92 REMARK 500 1 LYS A 28 -164.27 -55.11 REMARK 500 1 THR A 35 -19.74 -163.50 REMARK 500 1 ASP A 36 -70.42 -103.09 REMARK 500 1 ASP A 46 33.04 -91.29 REMARK 500 1 ILE A 57 -122.11 -78.16 REMARK 500 2 GLU A 27 125.77 57.89 REMARK 500 2 LYS A 28 90.45 -40.89 REMARK 500 2 LYS A 29 170.65 -57.19 REMARK 500 2 LYS A 30 91.22 -50.85 REMARK 500 2 THR A 35 -27.08 -167.19 REMARK 500 2 ASP A 36 -69.96 -101.64 REMARK 500 2 PHE A 43 -17.61 -48.68 REMARK 500 2 LYS A 44 13.45 -68.58 REMARK 500 2 ILE A 57 -120.16 -74.77 REMARK 500 3 GLU A 27 164.89 54.37 REMARK 500 3 LYS A 28 -178.39 -50.35 REMARK 500 3 LYS A 29 -161.16 -54.12 REMARK 500 3 LYS A 30 -166.82 -51.84 REMARK 500 3 PRO A 32 -167.22 -66.28 REMARK 500 3 THR A 35 -13.84 -140.44 REMARK 500 3 ASP A 36 -70.32 -107.10 REMARK 500 3 ASP A 46 59.62 -95.11 REMARK 500 3 ILE A 57 -119.63 -71.88 REMARK 500 4 LYS A 25 -159.76 43.43 REMARK 500 4 LYS A 26 90.49 -42.90 REMARK 500 4 LYS A 29 108.45 -44.50 REMARK 500 4 LYS A 30 73.21 -62.16 REMARK 500 4 THR A 35 -27.00 -157.45 REMARK 500 4 ASP A 36 -69.79 -98.58 REMARK 500 4 ASP A 46 38.33 -76.21 REMARK 500 4 ILE A 57 -120.37 -75.97 REMARK 500 5 LYS A 26 104.34 -51.27 REMARK 500 5 GLU A 27 102.94 -36.68 REMARK 500 5 LYS A 29 -174.26 -50.73 REMARK 500 5 PRO A 32 -173.46 -67.98 REMARK 500 5 THR A 35 -24.67 -167.09 REMARK 500 5 ASP A 36 -70.75 -98.36 REMARK 500 5 ILE A 57 -119.30 -72.68 REMARK 500 6 LYS A 26 -179.10 49.40 REMARK 500 6 GLU A 27 -172.16 -52.19 REMARK 500 6 LYS A 28 163.33 -41.08 REMARK 500 6 LYS A 29 58.43 -64.56 REMARK 500 6 PRO A 32 -164.98 -65.16 REMARK 500 6 THR A 35 -26.66 -163.79 REMARK 500 6 ASP A 36 -70.55 -97.17 REMARK 500 6 ASP A 46 59.39 -94.25 REMARK 500 6 ILE A 57 -119.93 -73.93 REMARK 500 REMARK 500 THIS ENTRY HAS 164 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 42 0.16 SIDE CHAIN REMARK 500 2 ARG A 42 0.31 SIDE CHAIN REMARK 500 3 ARG A 42 0.30 SIDE CHAIN REMARK 500 4 ARG A 42 0.28 SIDE CHAIN REMARK 500 5 ARG A 42 0.30 SIDE CHAIN REMARK 500 6 ARG A 42 0.20 SIDE CHAIN REMARK 500 7 ARG A 42 0.27 SIDE CHAIN REMARK 500 8 ARG A 42 0.20 SIDE CHAIN REMARK 500 9 ARG A 42 0.19 SIDE CHAIN REMARK 500 10 ARG A 42 0.31 SIDE CHAIN REMARK 500 11 ARG A 42 0.32 SIDE CHAIN REMARK 500 12 ARG A 42 0.30 SIDE CHAIN REMARK 500 13 ARG A 42 0.29 SIDE CHAIN REMARK 500 14 ARG A 42 0.22 SIDE CHAIN REMARK 500 15 ARG A 42 0.32 SIDE CHAIN REMARK 500 16 ARG A 42 0.21 SIDE CHAIN REMARK 500 17 ARG A 42 0.15 SIDE CHAIN REMARK 500 18 ARG A 42 0.20 SIDE CHAIN REMARK 500 19 ARG A 42 0.26 SIDE CHAIN REMARK 500 20 ARG A 42 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18449 RELATED DB: BMRB DBREF 2LSW A 24 58 UNP P98082 DAB2_HUMAN 24 58 SEQADV 2LSW GLY A 19 UNP P98082 EXPRESSION TAG SEQADV 2LSW PRO A 20 UNP P98082 EXPRESSION TAG SEQADV 2LSW LEU A 21 UNP P98082 EXPRESSION TAG SEQADV 2LSW GLY A 22 UNP P98082 EXPRESSION TAG SEQADV 2LSW SER A 23 UNP P98082 EXPRESSION TAG SEQRES 1 A 40 GLY PRO LEU GLY SER SER LYS LYS GLU LYS LYS LYS GLY SEQRES 2 A 40 PRO GLU LYS THR ASP GLU TYR LEU LEU ALA ARG PHE LYS SEQRES 3 A 40 GLY ASP GLY VAL LYS TYR LYS ALA LYS LEU ILE GLY ILE SEQRES 4 A 40 ASP HELIX 1 1 TYR A 38 LYS A 44 1 7 HELIX 2 2 ASP A 46 GLY A 56 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1